jgi.p|Nanoce1779_2|601677, mRNA_8345 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|601677
Unique Name	mRNA_8345
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2052
Alignment location	scaffold_23:425182..427233 -

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Properties


Property Name	Value
TranscriptId	601763
Track	FilteredModels2
ProteinId	601677

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_23	supercontig	scaffold_23:425182..427233 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|601677	gene_8345	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|601677	mRNA_8345-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8345	CDS_8345	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_23:425182..427233-
coding sequence from alignment at scaffold_23:425182..427233-

mRNA sequence

>mRNA_8345 ID=mRNA_8345|Name=jgi.p|Nanoce1779_2|601677|organism=Nannochloropsis oceanica|type=mRNA|length=2052bp
ACAGGCCTCACCAGCCTATCCATCTCCTTCTCTGCTGCTCTGCTGTTCCT
CCCACGACCTTAATTGTCAGAGCATCAATATAATAGAATCATGCGATTTA
TTGCCTCCTCTCGCGCATCCCTCCTGCTGGTCGCGACCGCTGCTGCCCTC
TGCCTCCCGTCGGCCCTCGCCCACATCACAGTGGAAGATAGCTTCGTCGA
CGATGCGGTGCGCGAGGACATTTTGGCCCAGCTACCGGAGCAAACCCAGT
TCAAGCACACCCTGGACTTGTCTGGCCAGCTCTATCAACGCCTTCTATCC
GTCCTCCACCCCAGCAACACCGATCTCTCTCTTACCGAGACTTCGGTGCC
TACCAGGGGGGAAGGCCGTTTTGTGTCCGCGCACAAGGACGTTTTCGAAG
ATCGTTCAACAGTTGAAGGGCCCGTGGGGCTGATCTACCTGGAGGGGGAT
GGCCGCATGCTCTTCCAGCATGAGGTGACTGGCGAAGAGACCGTGGTAGA
TGTACGGCCTGGACGATTGCTTTCGTGGGACAACAGTATCTACACCCACA
CGCTCATTCCTGGGGATATGCCTCGTCGCTTTCTTGGGCCGATGGCGTTT
CGCGATGGAGGGATGCAGTCTATAGGTGGACCCGCACCCGCGCCCACCCC
CGCGCCCTCCCCCGCACCTACCCCTGCGCCCTCCCCTGGTGTGAGTGTTA
TTGCGCAAGCGTATACTAACACCTTGAGTGTGAGTGCTGGAAGGATCATA
AGGGTGACACTTAACTTCATGGTCCTTGGTATGAATCCCACCCGCGAGCG
TGCGGTGCGAAAGTTGGAGGACTTGGACCTGGTGATCGGGGTAAGGACGG
AGAGGAATAAAAGAGAGGGTGAAAATGGCGGACGAGAGCAAGGGAGAGTG
GGAGGGAAGAGTAAGATTGCTTCCCTTTTTGGTAAGCATTACCACCAGAG
TCTGCTTAATGACCAAGCTTCGCTGTTCCTAACACTGCTCATCTCATTTC
GCGTATCCTGTATCTTCCCATCCATCTATCCTGCACCCCTCCTTTATTCC
CTTTCTCCCTCTCGTCACACCTCCCTCTAGTGCGTCATCTTGGATCAGGA
ATTGCGAGCCCTCGGGGCGCACAACAAGACGAACAATGCCAACGATAATA
TCGCTTTCAAGTCTTCCAAGCTGAAGCCCAATTTCTTCAAGCCAAAGTAT
GTATCTTCCCTTCAATCCTTCCTCTTTTTCGGTCGCTCCCTGTCAGACTG
ACCGGGACCTAAGAAAAAATACATGAATCGCGCCTTCCGGCAGGGAAAGG
CCAACCTATCACTTGCTGAAGTCATTGTCCCTCCGATCCTTCGATCCCTC
TTTCTTCCTTGTAGGTTGACCGCCACTGAGACAGTCGAGGGTGGTTTAGA
GTGGACCCTCCCAAGTGAGACGACGAAGATCCTCCACCCGTACAAGATTA
CCTGGGTTGTGCGTGTGGGGAAGGGCGCACCGTCCGGTACGATTATCCCT
ATCGTAGTCTATGTGGGAAATGAGTGGGATACCAGGCTGCAGGTGCTGGT
AAAGTAGAAAGGGAGGAAGGAAGGGTGGAAGAGGAGGTGGCTGGAATTGT
ACTCTGAATTTTCTGATGGATTGCAGGTATTAAGAGGAGAAGATAGAGGA
TGAAGAGGAGAGGTACAGTTTGTGAAGCTATATCGTGAAAGGCATAAACC
ATAAAATGATCTACCTGAGAGAGATGATTAAATTTTCGACTGAAGTTCAA
TCATACAGGCGGGGGGAGGATGCTCCACGCACGCGTTATTTTGGGGTTTG
AGTATTCGATGAGCTAAGGAAGTGCGCATATGAGTGAGGAGCGAACAAGG
AGAGAAGTAGAGAAATAGAGAGACTTGCTTCGACGCATCTCTCTCGTACG
TGCAGCTGTTTTTTGAGGAAACCCATAAGAATGCCGAGGAAGCAAGGAGG
AAGGGAAGGAGGGAGGGAAGACATGTTTGATGCTCGGGATGGAGTTACCT
TTCGGGGAAGGAAACTCAGTCTCAGAAATTTGATCAAAGAACGATAAGAG
AT

protein sequence of jgi.p|Nanoce1779_2|601677

>mRNA_8345-protein ID=mRNA_8345-protein|Name=jgi.p|Nanoce1779_2|601677|organism=Nannochloropsis oceanica|type=polypeptide|length=330bp
MRFIASSRASLLLVATAAALCLPSALAHITVEDSFVDDAVREDILAQLPE
QTQFKHTLDLSGQLYQRLLSVLHPSNTDLSLTETSVPTRGEGRFVSAHKD
VFEDRSTVEGPVGLIYLEGDGRMLFQHEVTGEETVVDVRPGRLLSWDNSI
YTHTLIPGDMPRRFLGPMAFRDGGMQSIGGPAPAPTPAPSPAPTPAPSPG
VSVIAQAYTNTLSVSAGRIIRVTLNFMVLGMNPTRERAVRKLEDLDLVIG
VRTERNKREGENGGREQGRVGGKSKIASLFGKHYHQSLLNDQASLFLTLL
ISFRVSCIFPSIYPAPLLYSLSPSRHTSL*

mRNA from alignment at scaffold_23:425182..427233-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8345 ID=mRNA_8345|Name=jgi.p|Nanoce1779_2|601677|organism=Nannochloropsis oceanica|type=mRNA|length=2052bp|location=Sequence derived from alignment at scaffold_23:425182..427233- (Nannochloropsis oceanica)
ACAGGCCTCACCAGCCTATCCATCTCCTTCTCTGCTGCTCTGCTGTTCCT
CCCACGACCTTAATTGTCAGAGCATCAATATAATAGAATCATGCGATTTA
TTGCCTCCTCTCGCGCATCCCTCCTGCTGGTCGCGACCGCTGCTGCCCTC
TGCCTCCCGTCGGCCCTCGCCCACATCACAGTGGAAGATAGCTTCGTCGA
CGATGCGGTGCGCGAGGACATTTTGGCCCAGCTACCGGAGCAAACCCAGT
TCAAGCACACCCTGGACTTGTCTGGCCAGCTCTATCAACGCCTTCTATCC
GTCCTCCACCCCAGCAACACCGATCTCTCTCTTACCGAGACTTCGGTGCC
TACCAGGGGGGAAGGCCGTTTTGTGTCCGCGCACAAGGACGTTTTCGAAG
ATCGTTCAACAGTTGAAGGGCCCGTGGGGCTGATCTACCTGGAGGGGGAT
GGCCGCATGCTCTTCCAGCATGAGGTGACTGGCGAAGAGACCGTGGTAGA
TGTACGGCCTGGACGATTGCTTTCGTGGGACAACAGTATCTACACCCACA
CGCTCATTCCTGGGGATATGCCTCGTCGCTTTCTTGGGCCGATGGCGTTT
CGCGATGGAGGGATGCAGTCTATAGGTGGACCCGCACCCGCGCCCACCCC
CGCGCCCTCCCCCGCACCTACCCCTGCGCCCTCCCCTGGTGTGAGTGTTA
TTGCGCAAGCGTATACTAACACCTTGAGTGTGAGTGCTGGAAGGATCATA
AGGGTGACACTTAACTTCATGGTCCTTGGTATGAATCCCACCCGCGAGCG
TGCGGTGCGAAAGTTGGAGGACTTGGACCTGGTGATCGGGGTAAGGACGG
AGAGGAATAAAAGAGAGGGTGAAAATGGCGGACGAGAGCAAGGGAGAGTG
GGAGGGAAGAGTAAGATTGCTTCCCTTTTTGGTAAGCATTACCACCAGAG
TCTGCTTAATGACCAAGCTTCGCTGTTCCTAACACTGCTCATCTCATTTC
GCGTATCCTGTATCTTCCCATCCATCTATCCTGCACCCCTCCTTTATTCC
CTTTCTCCCTCTCGTCACACCTCCCTCTAGTGCGTCATCTTGGATCAGGA
ATTGCGAGCCCTCGGGGCGCACAACAAGACGAACAATGCCAACGATAATA
TCGCTTTCAAGTCTTCCAAGCTGAAGCCCAATTTCTTCAAGCCAAAGTAT
GTATCTTCCCTTCAATCCTTCCTCTTTTTCGGTCGCTCCCTGTCAGACTG
ACCGGGACCTAAGAAAAAATACATGAATCGCGCCTTCCGGCAGGGAAAGG
CCAACCTATCACTTGCTGAAGTCATTGTCCCTCCGATCCTTCGATCCCTC
TTTCTTCCTTGTAGGTTGACCGCCACTGAGACAGTCGAGGGTGGTTTAGA
GTGGACCCTCCCAAGTGAGACGACGAAGATCCTCCACCCGTACAAGATTA
CCTGGGTTGTGCGTGTGGGGAAGGGCGCACCGTCCGGTACGATTATCCCT
ATCGTAGTCTATGTGGGAAATGAGTGGGATACCAGGCTGCAGGTGCTGGT
AAAGTAGAAAGGGAGGAAGGAAGGGTGGAAGAGGAGGTGGCTGGAATTGT
ACTCTGAATTTTCTGATGGATTGCAGGTATTAAGAGGAGAAGATAGAGGA
TGAAGAGGAGAGGTACAGTTTGTGAAGCTATATCGTGAAAGGCATAAACC
ATAAAATGATCTACCTGAGAGAGATGATTAAATTTTCGACTGAAGTTCAA
TCATACAGGCGGGGGGAGGATGCTCCACGCACGCGTTATTTTGGGGTTTG
AGTATTCGATGAGCTAAGGAAGTGCGCATATGAGTGAGGAGCGAACAAGG
AGAGAAGTAGAGAAATAGAGAGACTTGCTTCGACGCATCTCTCTCGTACG
TGCAGCTGTTTTTTGAGGAAACCCATAAGAATGCCGAGGAAGCAAGGAGG
AAGGGAAGGAGGGAGGGAAGACATGTTTGATGCTCGGGATGGAGTTACCT
TTCGGGGAAGGAAACTCAGTCTCAGAAATTTGATCAAAGAACGATAAGAG
AT

Coding sequence (CDS) from alignment at scaffold_23:425182..427233-

>mRNA_8345 ID=mRNA_8345|Name=jgi.p|Nanoce1779_2|601677|organism=Nannochloropsis oceanica|type=CDS|length=990bp|location=Sequence derived from alignment at scaffold_23:425182..427233- (Nannochloropsis oceanica)
ATGCGATTTATTGCCTCCTCTCGCGCATCCCTCCTGCTGGTCGCGACCGC
TGCTGCCCTCTGCCTCCCGTCGGCCCTCGCCCACATCACAGTGGAAGATA
GCTTCGTCGACGATGCGGTGCGCGAGGACATTTTGGCCCAGCTACCGGAG
CAAACCCAGTTCAAGCACACCCTGGACTTGTCTGGCCAGCTCTATCAACG
CCTTCTATCCGTCCTCCACCCCAGCAACACCGATCTCTCTCTTACCGAGA
CTTCGGTGCCTACCAGGGGGGAAGGCCGTTTTGTGTCCGCGCACAAGGAC
GTTTTCGAAGATCGTTCAACAGTTGAAGGGCCCGTGGGGCTGATCTACCT
GGAGGGGGATGGCCGCATGCTCTTCCAGCATGAGGTGACTGGCGAAGAGA
CCGTGGTAGATGTACGGCCTGGACGATTGCTTTCGTGGGACAACAGTATC
TACACCCACACGCTCATTCCTGGGGATATGCCTCGTCGCTTTCTTGGGCC
GATGGCGTTTCGCGATGGAGGGATGCAGTCTATAGGTGGACCCGCACCCG
CGCCCACCCCCGCGCCCTCCCCCGCACCTACCCCTGCGCCCTCCCCTGGT
GTGAGTGTTATTGCGCAAGCGTATACTAACACCTTGAGTGTGAGTGCTGG
AAGGATCATAAGGGTGACACTTAACTTCATGGTCCTTGGTATGAATCCCA
CCCGCGAGCGTGCGGTGCGAAAGTTGGAGGACTTGGACCTGGTGATCGGG
GTAAGGACGGAGAGGAATAAAAGAGAGGGTGAAAATGGCGGACGAGAGCA
AGGGAGAGTGGGAGGGAAGAGTAAGATTGCTTCCCTTTTTGGTAAGCATT
ACCACCAGAGTCTGCTTAATGACCAAGCTTCGCTGTTCCTAACACTGCTC
ATCTCATTTCGCGTATCCTGTATCTTCCCATCCATCTATCCTGCACCCCT
CCTTTATTCCCTTTCTCCCTCTCGTCACACCTCCCTCTAG

Synonyms

Publications