jgi.p|Nanoce1779_2|655351, mRNA_8286 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|655351
Unique NamemRNA_8286
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1582
Alignment locationscaffold_23:271251..272832 -

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Properties
Property NameValue
TranscriptId655437
TrackFilteredModels2
ProteinId655351
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_23supercontigscaffold_23:271251..272832 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|655351gene_8286Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|655351mRNA_8286-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8286CDS_8286Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8286 ID=mRNA_8286|Name=jgi.p|Nanoce1779_2|655351|organism=Nannochloropsis oceanica|type=mRNA|length=1582bp
ATGCCCCTTCTTCCGATCACCTCGCCCGTTACCCTCCACAAGTGCAAGAT
GTATCCCGCTCGAGGCCGGGACATTTTCATTGCATCGTATCCGAAAAGTG
GAACGACTTGGACGCAGAATATTGTCTACCAATTGTTGGTCGCGGAGGCA
GAAGTGAAAAGAAGAGCAAGGAGAAAAGAGAGAGGGTTGTGCAAGACGAA
CGCGGGACAAAAAAGAGGAGGAGGCAGTAGAAGAGGGATCGAGGACGGCA
TACACAATTCCAATGGCGAAAAAGATGAGAAGGGGGATGAATATCCTCCG
CCCTTTAAAATAGAGCATATAAGTGAAATAGCGCCTTTCTTTGAAGTGAA
CCGGACCTGGCAACAAGAAAGAGGAGGAGGAGAAAAAGAAAAAGAAAGAA
ACGGACAAGATTTAGATGTAGAAAGTGGAGTACAAGGAAGCCAAGAAAGA
GGAGAAGGATGGGGAGAGATTGCACTCCTCTATCGACAGAAACAAGGACA
GCTCGGTCGACGTGTTTTTAACACGCACTTACGCTGGGAACAGATGCCCA
AGCCGATACCGCAGGTCAGGGAAGAAAGGGAGGGAGGGGGTGACGATGGG
GTACTTGTTGTTGGTACTGCAGATTCTAATAAGCAAAAGGAGGAAGTGGA
CGACGAGGATGAGGAGGAGAAAGCCGAACCGTGTTACCTCTATCTCGTCC
GAGACGGTCGTGACGTCTGTGTCTCGTTCTATCACCATTTGAAAAGCATG
GCGAGTGACGATGGTGGGTATCAAGGGGAATTCGCGGATTTTTTCGAGGA
ATGGATAGAGGGAAGGCTGCCTTATGGGAGATGGATGGATCACGTTGTTT
CCTGGTTGGCGAGGGAGGGAGGGAGGGAGGGAGAGGAGGAGGAGGAAGAG
GGGAAGCGGAAAGAGCATGATAGCAATTATGAGAAGGAGGGAGAGAGGAA
GGGGAGGGTGTTGGTGGTGAGGTATGAGGATTTGAAGAAAGATTTGATGG
GCGGTTTGAAGAGGATTGCGAAGCACTGTCGGATCTCGTTGAGGACGAGG
GGGAGGGAGGGGGCCAGGGAGGGTGAGGTGGAGAAGTCGACAGGAGATAT
GAAAAAAGGGCAGGAAGGAGCGAGGACGAAAGAAGAGGAGGAGAAGAAGG
AGGAGGAGGAGGATAGGATGTGGGAGACAGTTAAGGAGAAGTGTTCATTT
GAGTACATGGTGGAAAACAGGAAGATGTTTGAGCCGCGAAGTGTGACCTG
GACAGACCCCGCCTTTCGATTCATTCGGAAGGGGGAGGTTGGGGACCATA
AAGTACATTTCACGGAGGAGCAGCTGAGGAGGTTTGCGGGTTCGGTAAAG
GAATGGTTTGGGGAGGAGGGGGGTGGGGGAGAAGGGGAGAGAAGGAGGGC
ACCGGTGCATGTGACCCAGATGTTGGAGAGTTGGGAGGGGTTTTTGGACG
TATAAATGATCGGGAGATTGTTGCGGAAGATTTTTTCAAGTCTTCACCAG
CACAAGCCCGTACGTAAAGAAGGTGAGAATTGGAAGGGCTTCGGGGGGGA
AAAGGGAGGAGGGCGGCAGGGGGGCAGGGGTT
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protein sequence of jgi.p|Nanoce1779_2|655351

>mRNA_8286-protein ID=mRNA_8286-protein|Name=jgi.p|Nanoce1779_2|655351|organism=Nannochloropsis oceanica|type=polypeptide|length=485bp
MPLLPITSPVTLHKCKMYPARGRDIFIASYPKSGTTWTQNIVYQLLVAEA
EVKRRARRKERGLCKTNAGQKRGGGSRRGIEDGIHNSNGEKDEKGDEYPP
PFKIEHISEIAPFFEVNRTWQQERGGGEKEKERNGQDLDVESGVQGSQER
GEGWGEIALLYRQKQGQLGRRVFNTHLRWEQMPKPIPQVREEREGGGDDG
VLVVGTADSNKQKEEVDDEDEEEKAEPCYLYLVRDGRDVCVSFYHHLKSM
ASDDGGYQGEFADFFEEWIEGRLPYGRWMDHVVSWLAREGGREGEEEEEE
GKRKEHDSNYEKEGERKGRVLVVRYEDLKKDLMGGLKRIAKHCRISLRTR
GREGAREGEVEKSTGDMKKGQEGARTKEEEEKKEEEEDRMWETVKEKCSF
EYMVENRKMFEPRSVTWTDPAFRFIRKGEVGDHKVHFTEEQLRRFAGSVK
EWFGEEGGGGEGERRRAPVHVTQMLESWEGFLDV*
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mRNA from alignment at scaffold_23:271251..272832-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8286 ID=mRNA_8286|Name=jgi.p|Nanoce1779_2|655351|organism=Nannochloropsis oceanica|type=mRNA|length=1582bp|location=Sequence derived from alignment at scaffold_23:271251..272832- (Nannochloropsis oceanica)
ATGCCCCTTCTTCCGATCACCTCGCCCGTTACCCTCCACAAGTGCAAGAT
GTATCCCGCTCGAGGCCGGGACATTTTCATTGCATCGTATCCGAAAAGTG
GAACGACTTGGACGCAGAATATTGTCTACCAATTGTTGGTCGCGGAGGCA
GAAGTGAAAAGAAGAGCAAGGAGAAAAGAGAGAGGGTTGTGCAAGACGAA
CGCGGGACAAAAAAGAGGAGGAGGCAGTAGAAGAGGGATCGAGGACGGCA
TACACAATTCCAATGGCGAAAAAGATGAGAAGGGGGATGAATATCCTCCG
CCCTTTAAAATAGAGCATATAAGTGAAATAGCGCCTTTCTTTGAAGTGAA
CCGGACCTGGCAACAAGAAAGAGGAGGAGGAGAAAAAGAAAAAGAAAGAA
ACGGACAAGATTTAGATGTAGAAAGTGGAGTACAAGGAAGCCAAGAAAGA
GGAGAAGGATGGGGAGAGATTGCACTCCTCTATCGACAGAAACAAGGACA
GCTCGGTCGACGTGTTTTTAACACGCACTTACGCTGGGAACAGATGCCCA
AGCCGATACCGCAGGTCAGGGAAGAAAGGGAGGGAGGGGGTGACGATGGG
GTACTTGTTGTTGGTACTGCAGATTCTAATAAGCAAAAGGAGGAAGTGGA
CGACGAGGATGAGGAGGAGAAAGCCGAACCGTGTTACCTCTATCTCGTCC
GAGACGGTCGTGACGTCTGTGTCTCGTTCTATCACCATTTGAAAAGCATG
GCGAGTGACGATGGTGGGTATCAAGGGGAATTCGCGGATTTTTTCGAGGA
ATGGATAGAGGGAAGGCTGCCTTATGGGAGATGGATGGATCACGTTGTTT
CCTGGTTGGCGAGGGAGGGAGGGAGGGAGGGAGAGGAGGAGGAGGAAGAG
GGGAAGCGGAAAGAGCATGATAGCAATTATGAGAAGGAGGGAGAGAGGAA
GGGGAGGGTGTTGGTGGTGAGGTATGAGGATTTGAAGAAAGATTTGATGG
GCGGTTTGAAGAGGATTGCGAAGCACTGTCGGATCTCGTTGAGGACGAGG
GGGAGGGAGGGGGCCAGGGAGGGTGAGGTGGAGAAGTCGACAGGAGATAT
GAAAAAAGGGCAGGAAGGAGCGAGGACGAAAGAAGAGGAGGAGAAGAAGG
AGGAGGAGGAGGATAGGATGTGGGAGACAGTTAAGGAGAAGTGTTCATTT
GAGTACATGGTGGAAAACAGGAAGATGTTTGAGCCGCGAAGTGTGACCTG
GACAGACCCCGCCTTTCGATTCATTCGGAAGGGGGAGGTTGGGGACCATA
AAGTACATTTCACGGAGGAGCAGCTGAGGAGGTTTGCGGGTTCGGTAAAG
GAATGGTTTGGGGAGGAGGGGGGTGGGGGAGAAGGGGAGAGAAGGAGGGC
ACCGGTGCATGTGACCCAGATGTTGGAGAGTTGGGAGGGGTTTTTGGACG
TATAAATGATCGGGAGATTGTTGCGGAAGATTTTTTCAAGTCTTCACCAG
CACAAGCCCGTACGTAAAGAAGGTGAGAATTGGAAGGGCTTCGGGGGGGA
AAAGGGAGGAGGGCGGCAGGGGGGCAGGGGTT
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Coding sequence (CDS) from alignment at scaffold_23:271251..272832-

>mRNA_8286 ID=mRNA_8286|Name=jgi.p|Nanoce1779_2|655351|organism=Nannochloropsis oceanica|type=CDS|length=1455bp|location=Sequence derived from alignment at scaffold_23:271251..272832- (Nannochloropsis oceanica)
ATGCCCCTTCTTCCGATCACCTCGCCCGTTACCCTCCACAAGTGCAAGAT
GTATCCCGCTCGAGGCCGGGACATTTTCATTGCATCGTATCCGAAAAGTG
GAACGACTTGGACGCAGAATATTGTCTACCAATTGTTGGTCGCGGAGGCA
GAAGTGAAAAGAAGAGCAAGGAGAAAAGAGAGAGGGTTGTGCAAGACGAA
CGCGGGACAAAAAAGAGGAGGAGGCAGTAGAAGAGGGATCGAGGACGGCA
TACACAATTCCAATGGCGAAAAAGATGAGAAGGGGGATGAATATCCTCCG
CCCTTTAAAATAGAGCATATAAGTGAAATAGCGCCTTTCTTTGAAGTGAA
CCGGACCTGGCAACAAGAAAGAGGAGGAGGAGAAAAAGAAAAAGAAAGAA
ACGGACAAGATTTAGATGTAGAAAGTGGAGTACAAGGAAGCCAAGAAAGA
GGAGAAGGATGGGGAGAGATTGCACTCCTCTATCGACAGAAACAAGGACA
GCTCGGTCGACGTGTTTTTAACACGCACTTACGCTGGGAACAGATGCCCA
AGCCGATACCGCAGGTCAGGGAAGAAAGGGAGGGAGGGGGTGACGATGGG
GTACTTGTTGTTGGTACTGCAGATTCTAATAAGCAAAAGGAGGAAGTGGA
CGACGAGGATGAGGAGGAGAAAGCCGAACCGTGTTACCTCTATCTCGTCC
GAGACGGTCGTGACGTCTGTGTCTCGTTCTATCACCATTTGAAAAGCATG
GCGAGTGACGATGGTGGGTATCAAGGGGAATTCGCGGATTTTTTCGAGGA
ATGGATAGAGGGAAGGCTGCCTTATGGGAGATGGATGGATCACGTTGTTT
CCTGGTTGGCGAGGGAGGGAGGGAGGGAGGGAGAGGAGGAGGAGGAAGAG
GGGAAGCGGAAAGAGCATGATAGCAATTATGAGAAGGAGGGAGAGAGGAA
GGGGAGGGTGTTGGTGGTGAGGTATGAGGATTTGAAGAAAGATTTGATGG
GCGGTTTGAAGAGGATTGCGAAGCACTGTCGGATCTCGTTGAGGACGAGG
GGGAGGGAGGGGGCCAGGGAGGGTGAGGTGGAGAAGTCGACAGGAGATAT
GAAAAAAGGGCAGGAAGGAGCGAGGACGAAAGAAGAGGAGGAGAAGAAGG
AGGAGGAGGAGGATAGGATGTGGGAGACAGTTAAGGAGAAGTGTTCATTT
GAGTACATGGTGGAAAACAGGAAGATGTTTGAGCCGCGAAGTGTGACCTG
GACAGACCCCGCCTTTCGATTCATTCGGAAGGGGGAGGTTGGGGACCATA
AAGTACATTTCACGGAGGAGCAGCTGAGGAGGTTTGCGGGTTCGGTAAAG
GAATGGTTTGGGGAGGAGGGGGGTGGGGGAGAAGGGGAGAGAAGGAGGGC
ACCGGTGCATGTGACCCAGATGTTGGAGAGTTGGGAGGGGTTTTTGGACG
TATAA
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Synonyms
Publications