jgi.p|Nanoce1779_2|602592, mRNA_8131 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|602592
Unique Name	mRNA_8131
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2247
Alignment location	scaffold_25:237311..239557 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	602678
Track	FilteredModels2
ProteinId	602592

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_25	supercontig	scaffold_25:237311..239557 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|602592	gene_8131	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|602592	mRNA_8131-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8131	CDS_8131	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_25:237311..239557+
coding sequence from alignment at scaffold_25:237311..239557+

mRNA sequence

>mRNA_8131 ID=mRNA_8131|Name=jgi.p|Nanoce1779_2|602592|organism=Nannochloropsis oceanica|type=mRNA|length=2247bp
GTTGACAGCAGTGCTAGTCGAAGCAGTAGTAGTAGTAGTAGTATTTGCAG
AAGCAGAACCAGCAGCAGCACCAGCACCAGCAGCAGCATTAGAAGCAGTA
GTAGCGACAACGGCGGCAGCAGGGGCAACAACAGTCGCCGATTTATGGCT
GATGCTAGAAAGGGGAATGTTCCTTCATGTCAAACAGTCATGGCAGGTGG
GGGTAATGCTAGCCAGGCTTCTTCTTCCCCTGCCTTAGCAGAAGAGTCTA
GGATCGCAGAAGGTAGCGTGTTGGATGAGACTCCCCCCATTACTCCCATT
CTTGCCTCTGTGAAAGAGCAGGAGGAGGAGGAGAAGGACGAAGAGGAGCA
AGAGCACTGGGAGGAGGAGGATGAAGAGGAGCAGAAGCAGCAGGAGGAGG
AGGATGCGGAGAAGAAAGATGCGGAGGACGATGATGGAAAAGAAAGTGCA
GAGGAAGATGGTACTCTTTCTCAGGAGAAATCTCCTTCTCAGAATACTCA
GGATTATATATGTGAGGGCGATGGGGGGTCGGACGAGGACGATGAAGACA
ACGAGGTGGGTAGGATTGTGGCTGTGCAAGACCGCGCAACCCATGGACAT
GCGCCCTTGTCGGGATATGGTGTGGCTCTCGAAGATGAGGCTGTGGTAAT
GGCTGCCAAGAGGACAGCCGCAGCACTGAGATTGCAGAGCAAATGGCGGA
TGATTTTGGAAAGGCGTGTGACAAGCCAGGCCAGAGAACTAATTTTGCAG
CGGAAAGAGAACGAGACGCGATCAGCAGCGGCGGCAACAGTCACTGCGCA
ATTCTTGGTGAATATTCGAAGTGCCAGTTTGCCTGTCCAATATGAAAGGG
TAATACAGATGGCTGAAGAGAGTGCTTTTGCTGCCGCTGAAGTTCAGGTC
CAAGTGTGTGCCCAGGCACATGCAGCAGGAAATATTTCTGCCACCGCGGC
AGATGCGACCAAAGCGCTACCCCTGGCAACAAGTGAGCGGCAAGCTCGCG
CTGTAAAGCTGCTAAACAGCTACAGTGAGCGTATCCAAGGGCGATTCATG
CTTCAAAGGACCTTTACCAAGCTGCAATATGCAATTATGGAGAAGGTTAC
GGATAAACTTGAGCACGCCACAAGCAAGATACATTCGCGACTTGCATTTA
AGTACCTCCATACCCTCCAGCAAAATTATGCTGCCACAAGTGTTGCTGCT
ACCCTCGTTGCAGAAGCCGAGCTTCATACGGCTCACTGTCAAGCTTCTGC
AACAAAGGTCCATACGGCCTTTCGGCGCTGGATGGCCGTGCGTGACTATC
CCTCTCAGGAGGGCGCCCATCGCCTCATCCAAAAATTGGTTTCCGCGCAT
AGTCTACGTAGTAAGAGCATCGCCTTCTGCACCTGGCGCGCCCAGACCCT
TACAGTTGTACATCTACAGCGACTAATCCGAGGGCACCTGGCTCGCCTGC
ACTTCCAGCGTTCTCAAGTCGCCATCCTTCGAATCCAGGTCTGGTACCGT
AAATGCCAGCTGCGCTGCCATTGCTCCGTGGAGAAGCAAGACTTATTTTC
AACTCAGAATGCATTGTTGAAGCTGCAAGGCATGGCCCGAGATTTGCTAG
CCGCTCAGGAGGCCCAGCAGCGCAAGGAAGCTCTCGCTGACCTATCTGTT
CGCATGCAGGCTGTCTTAACGATCCAGCGCATGATGCGAAGGTGTTTGGG
GAGGATGGCTGCTCAATCGGCTCCATTGGTCGAGGAAAGCGAAGCCACTA
TCCCACTTCAGGGGAGCATTCGAGGCCGCATGGCTCAAGTCAAGCCCCAA
TATCCCCGCGTGCAGGTAGAAAATATGGAACAAGAGGAAGTGACAACAAT
CGTAGCTGATGCCCATCTTCTTCAGCCCACAGTCTCTACTCTGGAACAAC
ACGGAGCGCCTCCTGTGGCAAAAAAGAGGTCTCTGGACGTTGTCGGTACA
GTTGTGGACGTTTCCTCGGTCCTGTCCAATCCATTTCAGCTGACCTCTTC
GTTGTCTTCGTCTCTGCGGCCCGGTCGTCTCATGGCCATTTTGAGACGTA
AAACAATGGACAAGTCAGTGGAGGAGCGAGAACAGGCAGATAGCCCAGAG
GCCACTACTGCAAATGCAGCAGGTTTTACATCTCCAGTTTCATCCCGACA
GGTGTTTAATGACGAGGACACCAACCAGGATTGGGGAGGAACAGACATCT
CTCAATCAGTTCGGGCTTCTCGTAAGTCTTCTCTGCTTGGTCTCGGT

protein sequence of jgi.p|Nanoce1779_2|602592

>mRNA_8131-protein ID=mRNA_8131-protein|Name=jgi.p|Nanoce1779_2|602592|organism=Nannochloropsis oceanica|type=polypeptide|length=635bp
MADARKGNVPSCQTVMAGGGNASQASSSPALAEESRIAEGSVLDETPPIT
PILASVKEQEEEEKDEEEQEHWEEEDEEEQKQQEEEDAEKKDAEDDDGKE
SAEEDGTLSQEKSPSQNTQDYICEGDGGSDEDDEDNEVGRIVAVQDRATH
GHAPLSGYGVALEDEAVVMAAKRTAAALRLQSKWRMILERRVTSQARELI
LQRKENETRSAAAATVTAQFLVNIRSASLPVQYERVIQMAEESAFAAAEV
QVQVCAQAHAAGNISATAADATKALPLATSERQARAVKLLNSYSERIQGR
FMLQRTFTKLQYAIMEKVTDKLEHATSKIHSRLAFKYLHTLQQNYAATSV
AATLVAEAELHTAHCQASATKVHTAFRRWMAVRDYPSQEGAHRLIQKLVS
AHSLRSKSIAFCTWRAQTLTVVHLQRLIRGHLARLHFQRSQVAILRIQVW
YRKCQLRCHCSVEKQDLFSTQNALLKLQGMARDLLAAQEAQQRKEALADL
SVRMQAVLTIQRMMRRCLGRMAAQSAPLVEESEATIPLQGSIRGRMAQVK
PQYPRVQVENMEQEEVTTIVADAHLLQPTVSTLEQHGAPPVAKKRSLDVV
GTVVDVSSVLSNPFQLTSSLSSSLRPGRLMAILRR

mRNA from alignment at scaffold_25:237311..239557+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8131 ID=mRNA_8131|Name=jgi.p|Nanoce1779_2|602592|organism=Nannochloropsis oceanica|type=mRNA|length=2247bp|location=Sequence derived from alignment at scaffold_25:237311..239557+ (Nannochloropsis oceanica)
GTTGACAGCAGTGCTAGTCGAAGCAGTAGTAGTAGTAGTAGTATTTGCAG
AAGCAGAACCAGCAGCAGCACCAGCACCAGCAGCAGCATTAGAAGCAGTA
GTAGCGACAACGGCGGCAGCAGGGGCAACAACAGTCGCCGATTTATGGCT
GATGCTAGAAAGGGGAATGTTCCTTCATGTCAAACAGTCATGGCAGGTGG
GGGTAATGCTAGCCAGGCTTCTTCTTCCCCTGCCTTAGCAGAAGAGTCTA
GGATCGCAGAAGGTAGCGTGTTGGATGAGACTCCCCCCATTACTCCCATT
CTTGCCTCTGTGAAAGAGCAGGAGGAGGAGGAGAAGGACGAAGAGGAGCA
AGAGCACTGGGAGGAGGAGGATGAAGAGGAGCAGAAGCAGCAGGAGGAGG
AGGATGCGGAGAAGAAAGATGCGGAGGACGATGATGGAAAAGAAAGTGCA
GAGGAAGATGGTACTCTTTCTCAGGAGAAATCTCCTTCTCAGAATACTCA
GGATTATATATGTGAGGGCGATGGGGGGTCGGACGAGGACGATGAAGACA
ACGAGGTGGGTAGGATTGTGGCTGTGCAAGACCGCGCAACCCATGGACAT
GCGCCCTTGTCGGGATATGGTGTGGCTCTCGAAGATGAGGCTGTGGTAAT
GGCTGCCAAGAGGACAGCCGCAGCACTGAGATTGCAGAGCAAATGGCGGA
TGATTTTGGAAAGGCGTGTGACAAGCCAGGCCAGAGAACTAATTTTGCAG
CGGAAAGAGAACGAGACGCGATCAGCAGCGGCGGCAACAGTCACTGCGCA
ATTCTTGGTGAATATTCGAAGTGCCAGTTTGCCTGTCCAATATGAAAGGG
TAATACAGATGGCTGAAGAGAGTGCTTTTGCTGCCGCTGAAGTTCAGGTC
CAAGTGTGTGCCCAGGCACATGCAGCAGGAAATATTTCTGCCACCGCGGC
AGATGCGACCAAAGCGCTACCCCTGGCAACAAGTGAGCGGCAAGCTCGCG
CTGTAAAGCTGCTAAACAGCTACAGTGAGCGTATCCAAGGGCGATTCATG
CTTCAAAGGACCTTTACCAAGCTGCAATATGCAATTATGGAGAAGGTTAC
GGATAAACTTGAGCACGCCACAAGCAAGATACATTCGCGACTTGCATTTA
AGTACCTCCATACCCTCCAGCAAAATTATGCTGCCACAAGTGTTGCTGCT
ACCCTCGTTGCAGAAGCCGAGCTTCATACGGCTCACTGTCAAGCTTCTGC
AACAAAGGTCCATACGGCCTTTCGGCGCTGGATGGCCGTGCGTGACTATC
CCTCTCAGGAGGGCGCCCATCGCCTCATCCAAAAATTGGTTTCCGCGCAT
AGTCTACGTAGTAAGAGCATCGCCTTCTGCACCTGGCGCGCCCAGACCCT
TACAGTTGTACATCTACAGCGACTAATCCGAGGGCACCTGGCTCGCCTGC
ACTTCCAGCGTTCTCAAGTCGCCATCCTTCGAATCCAGGTCTGGTACCGT
AAATGCCAGCTGCGCTGCCATTGCTCCGTGGAGAAGCAAGACTTATTTTC
AACTCAGAATGCATTGTTGAAGCTGCAAGGCATGGCCCGAGATTTGCTAG
CCGCTCAGGAGGCCCAGCAGCGCAAGGAAGCTCTCGCTGACCTATCTGTT
CGCATGCAGGCTGTCTTAACGATCCAGCGCATGATGCGAAGGTGTTTGGG
GAGGATGGCTGCTCAATCGGCTCCATTGGTCGAGGAAAGCGAAGCCACTA
TCCCACTTCAGGGGAGCATTCGAGGCCGCATGGCTCAAGTCAAGCCCCAA
TATCCCCGCGTGCAGGTAGAAAATATGGAACAAGAGGAAGTGACAACAAT
CGTAGCTGATGCCCATCTTCTTCAGCCCACAGTCTCTACTCTGGAACAAC
ACGGAGCGCCTCCTGTGGCAAAAAAGAGGTCTCTGGACGTTGTCGGTACA
GTTGTGGACGTTTCCTCGGTCCTGTCCAATCCATTTCAGCTGACCTCTTC
GTTGTCTTCGTCTCTGCGGCCCGGTCGTCTCATGGCCATTTTGAGACGTA
AAACAATGGACAAGTCAGTGGAGGAGCGAGAACAGGCAGATAGCCCAGAG
GCCACTACTGCAAATGCAGCAGGTTTTACATCTCCAGTTTCATCCCGACA
GGTGTTTAATGACGAGGACACCAACCAGGATTGGGGAGGAACAGACATCT
CTCAATCAGTTCGGGCTTCTCGTAAGTCTTCTCTGCTTGGTCTCGGT

Coding sequence (CDS) from alignment at scaffold_25:237311..239557+

>mRNA_8131 ID=mRNA_8131|Name=jgi.p|Nanoce1779_2|602592|organism=Nannochloropsis oceanica|type=CDS|length=1907bp|location=Sequence derived from alignment at scaffold_25:237311..239557+ (Nannochloropsis oceanica)
ATGGCTGATGCTAGAAAGGGGAATGTTCCTTCATGTCAAACAGTCATGGC
AGGTGGGGGTAATGCTAGCCAGGCTTCTTCTTCCCCTGCCTTAGCAGAAG
AGTCTAGGATCGCAGAAGGTAGCGTGTTGGATGAGACTCCCCCCATTACT
CCCATTCTTGCCTCTGTGAAAGAGCAGGAGGAGGAGGAGAAGGACGAAGA
GGAGCAAGAGCACTGGGAGGAGGAGGATGAAGAGGAGCAGAAGCAGCAGG
AGGAGGAGGATGCGGAGAAGAAAGATGCGGAGGACGATGATGGAAAAGAA
AGTGCAGAGGAAGATGGTACTCTTTCTCAGGAGAAATCTCCTTCTCAGAA
TACTCAGGATTATATATGTGAGGGCGATGGGGGGTCGGACGAGGACGATG
AAGACAACGAGGTGGGTAGGATTGTGGCTGTGCAAGACCGCGCAACCCAT
GGACATGCGCCCTTGTCGGGATATGGTGTGGCTCTCGAAGATGAGGCTGT
GGTAATGGCTGCCAAGAGGACAGCCGCAGCACTGAGATTGCAGAGCAAAT
GGCGGATGATTTTGGAAAGGCGTGTGACAAGCCAGGCCAGAGAACTAATT
TTGCAGCGGAAAGAGAACGAGACGCGATCAGCAGCGGCGGCAACAGTCAC
TGCGCAATTCTTGGTGAATATTCGAAGTGCCAGTTTGCCTGTCCAATATG
AAAGGGTAATACAGATGGCTGAAGAGAGTGCTTTTGCTGCCGCTGAAGTT
CAGGTCCAAGTGTGTGCCCAGGCACATGCAGCAGGAAATATTTCTGCCAC
CGCGGCAGATGCGACCAAAGCGCTACCCCTGGCAACAAGTGAGCGGCAAG
CTCGCGCTGTAAAGCTGCTAAACAGCTACAGTGAGCGTATCCAAGGGCGA
TTCATGCTTCAAAGGACCTTTACCAAGCTGCAATATGCAATTATGGAGAA
GGTTACGGATAAACTTGAGCACGCCACAAGCAAGATACATTCGCGACTTG
CATTTAAGTACCTCCATACCCTCCAGCAAAATTATGCTGCCACAAGTGTT
GCTGCTACCCTCGTTGCAGAAGCCGAGCTTCATACGGCTCACTGTCAAGC
TTCTGCAACAAAGGTCCATACGGCCTTTCGGCGCTGGATGGCCGTGCGTG
ACTATCCCTCTCAGGAGGGCGCCCATCGCCTCATCCAAAAATTGGTTTCC
GCGCATAGTCTACGTAGTAAGAGCATCGCCTTCTGCACCTGGCGCGCCCA
GACCCTTACAGTTGTACATCTACAGCGACTAATCCGAGGGCACCTGGCTC
GCCTGCACTTCCAGCGTTCTCAAGTCGCCATCCTTCGAATCCAGGTCTGG
TACCGTAAATGCCAGCTGCGCTGCCATTGCTCCGTGGAGAAGCAAGACTT
ATTTTCAACTCAGAATGCATTGTTGAAGCTGCAAGGCATGGCCCGAGATT
TGCTAGCCGCTCAGGAGGCCCAGCAGCGCAAGGAAGCTCTCGCTGACCTA
TCTGTTCGCATGCAGGCTGTCTTAACGATCCAGCGCATGATGCGAAGGTG
TTTGGGGAGGATGGCTGCTCAATCGGCTCCATTGGTCGAGGAAAGCGAAG
CCACTATCCCACTTCAGGGGAGCATTCGAGGCCGCATGGCTCAAGTCAAG
CCCCAATATCCCCGCGTGCAGGTAGAAAATATGGAACAAGAGGAAGTGAC
AACAATCGTAGCTGATGCCCATCTTCTTCAGCCCACAGTCTCTACTCTGG
AACAACACGGAGCGCCTCCTGTGGCAAAAAAGAGGTCTCTGGACGTTGTC
GGTACAGTTGTGGACGTTTCCTCGGTCCTGTCCAATCCATTTCAGCTGAC
CTCTTCGTTGTCTTCGTCTCTGCGGCCCGGTCGTCTCATGGCCATTTTGA
GACGTAA

Synonyms

Publications