jgi.p|Nanoce1779_2|576215, mRNA_97 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|576215
Unique NamemRNA_97
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1482
Alignment locationscaffold_3:267168..268649 -

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Properties
Property NameValue
TranscriptId576301
TrackFilteredModels2
ProteinId576215
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:267168..268649 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576215gene_97Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576215mRNA_97-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_97CDS_97Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_97 ID=mRNA_97|Name=jgi.p|Nanoce1779_2|576215|organism=Nannochloropsis oceanica|type=mRNA|length=1482bp
CATCGTTTTGCCTTGCACCGAATCTTGCTGCACAGTCGATCAGGCTGATT
TGAGCAGGCGCCGCAAGTGCCTTCAATCATAATCAAAACGCCAGCAAGCA
GCCAGTGCCCCTCACATTACGCCCACCCCTCTCCATATTCACATTCCCCC
AGCAGGTATGTCTAGTCCTTTGTACAGCGGCTCTCCGGGTCGCCAAAGCC
ACCGGGACCGGGACAGAGGCCACCGATATAGCAGTGGAGGAGGCAAGCGC
AGCAGGGAGCGGAGCAGGGAGCGGAGCCGGGAGCGTGGGAACACCGGCAC
TACCAGCGGTAGTGATAGCAAGCATCAGAGTTCCTCACTACGACGGCGAA
GCAAGACGAAGGATGGGCATGACAGTTTTACTGGCGGACGGTCGTCTCTA
GGCGGCTCCTCGTCCTCGTCCTCATCCTCCTTGTCTTCCCACTCCCGCCC
GCCCATCCACGAAAGCAGTAACAGCGGCGGCGGCGGCAGCAACAGCAATT
ATCGACGCACCCACCAACCACCACCCCTCTCCTCCGAAACTCGCCAAGCT
TACTTTATCAAATCATGTGCCTTTCTTGTGGCCTTGAGCAAAGAGCTCCA
CCTTGGGAAGGTCGCTACACACACTGCTCTCGTCTTCTTCCACCGCTTTT
TCAAACACCAATCATTCCAAGCCCACGACCGCCTTCTCGTCGCCACCGCC
TGCATCTACCTTGCAGCCAAGACTGAAGAACGGAATAACGTCAAGCTCTC
TATTATCGTCGTCCAGTACTTAAAAAAAATAGACGTCCTTCCAGATGAAG
TCGACCCTCTCGAATACAACCGCAACGCCGTCGCCCGCGAAGCGGTCCCG
GCATGGAAATTCCGTGTCATCTCCTATGAGAGGTGTCTTTTGTACACGAT
CGCTTTTGATTTGACCGTCACCCATCCCTTCAGGACCTTGCAGGACATGA
TGAAAACTGTGCGGGACGTCATGGCGGAGGAAGGAAGGAAGGGCGGGCCT
GCAGCAATAGGGATGGGTGCCGGGAGCAATATCACATCTTCGTTGACCTT
CTCGCAACAACAACAACAGCAACAGCCCTTTGACCACCGGACATTCTTTT
CCCAAGCCTGTAAATTCCTTAATGATAGCTTCTGCAACCCCTCCCTTATT
GACGTCGAGCCCTCCTACTCCGCCGCCCTGGCCCTATACCTCACCACCCT
CCTTTACGGCATAAAGCCCCCGACGAATAAAGGCACTTGGCTTGAAATCT
TTCATGTCCAAGACGAAGCCCGTTTCCTCTCTGATTGTTCGCTGGCGATT
CAAATGTATGGGGAAGAGAATTCAAATTTTCAAATTTTGAATGTTGTAGA
CGTACCCGAGCCAAGTTCCGTTCCTTTGGCGGTGACGAGGTCGGGTGTTC
ATTCCCGAGAACTGGAAATATCCTCTCTGTATGGAGGAGGAGGGTTGAGA
CGGTTGTCACCGTTGTTTTAGTGGGATGGATA
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protein sequence of jgi.p|Nanoce1779_2|576215

>mRNA_97-protein ID=mRNA_97-protein|Name=jgi.p|Nanoce1779_2|576215|organism=Nannochloropsis oceanica|type=polypeptide|length=438bp
MSSPLYSGSPGRQSHRDRDRGHRYSSGGGKRSRERSRERSRERGNTGTTS
GSDSKHQSSSLRRRSKTKDGHDSFTGGRSSLGGSSSSSSSSLSSHSRPPI
HESSNSGGGGSNSNYRRTHQPPPLSSETRQAYFIKSCAFLVALSKELHLG
KVATHTALVFFHRFFKHQSFQAHDRLLVATACIYLAAKTEERNNVKLSII
VVQYLKKIDVLPDEVDPLEYNRNAVAREAVPAWKFRVISYERCLLYTIAF
DLTVTHPFRTLQDMMKTVRDVMAEEGRKGGPAAIGMGAGSNITSSLTFSQ
QQQQQQPFDHRTFFSQACKFLNDSFCNPSLIDVEPSYSAALALYLTTLLY
GIKPPTNKGTWLEIFHVQDEARFLSDCSLAIQMYGEENSNFQILNVVDVP
EPSSVPLAVTRSGVHSRELEISSLYGGGGLRRLSPLF*
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mRNA from alignment at scaffold_3:267168..268649-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_97 ID=mRNA_97|Name=jgi.p|Nanoce1779_2|576215|organism=Nannochloropsis oceanica|type=mRNA|length=1482bp|location=Sequence derived from alignment at scaffold_3:267168..268649- (Nannochloropsis oceanica)
CATCGTTTTGCCTTGCACCGAATCTTGCTGCACAGTCGATCAGGCTGATT
TGAGCAGGCGCCGCAAGTGCCTTCAATCATAATCAAAACGCCAGCAAGCA
GCCAGTGCCCCTCACATTACGCCCACCCCTCTCCATATTCACATTCCCCC
AGCAGGTATGTCTAGTCCTTTGTACAGCGGCTCTCCGGGTCGCCAAAGCC
ACCGGGACCGGGACAGAGGCCACCGATATAGCAGTGGAGGAGGCAAGCGC
AGCAGGGAGCGGAGCAGGGAGCGGAGCCGGGAGCGTGGGAACACCGGCAC
TACCAGCGGTAGTGATAGCAAGCATCAGAGTTCCTCACTACGACGGCGAA
GCAAGACGAAGGATGGGCATGACAGTTTTACTGGCGGACGGTCGTCTCTA
GGCGGCTCCTCGTCCTCGTCCTCATCCTCCTTGTCTTCCCACTCCCGCCC
GCCCATCCACGAAAGCAGTAACAGCGGCGGCGGCGGCAGCAACAGCAATT
ATCGACGCACCCACCAACCACCACCCCTCTCCTCCGAAACTCGCCAAGCT
TACTTTATCAAATCATGTGCCTTTCTTGTGGCCTTGAGCAAAGAGCTCCA
CCTTGGGAAGGTCGCTACACACACTGCTCTCGTCTTCTTCCACCGCTTTT
TCAAACACCAATCATTCCAAGCCCACGACCGCCTTCTCGTCGCCACCGCC
TGCATCTACCTTGCAGCCAAGACTGAAGAACGGAATAACGTCAAGCTCTC
TATTATCGTCGTCCAGTACTTAAAAAAAATAGACGTCCTTCCAGATGAAG
TCGACCCTCTCGAATACAACCGCAACGCCGTCGCCCGCGAAGCGGTCCCG
GCATGGAAATTCCGTGTCATCTCCTATGAGAGGTGTCTTTTGTACACGAT
CGCTTTTGATTTGACCGTCACCCATCCCTTCAGGACCTTGCAGGACATGA
TGAAAACTGTGCGGGACGTCATGGCGGAGGAAGGAAGGAAGGGCGGGCCT
GCAGCAATAGGGATGGGTGCCGGGAGCAATATCACATCTTCGTTGACCTT
CTCGCAACAACAACAACAGCAACAGCCCTTTGACCACCGGACATTCTTTT
CCCAAGCCTGTAAATTCCTTAATGATAGCTTCTGCAACCCCTCCCTTATT
GACGTCGAGCCCTCCTACTCCGCCGCCCTGGCCCTATACCTCACCACCCT
CCTTTACGGCATAAAGCCCCCGACGAATAAAGGCACTTGGCTTGAAATCT
TTCATGTCCAAGACGAAGCCCGTTTCCTCTCTGATTGTTCGCTGGCGATT
CAAATGTATGGGGAAGAGAATTCAAATTTTCAAATTTTGAATGTTGTAGA
CGTACCCGAGCCAAGTTCCGTTCCTTTGGCGGTGACGAGGTCGGGTGTTC
ATTCCCGAGAACTGGAAATATCCTCTCTGTATGGAGGAGGAGGGTTGAGA
CGGTTGTCACCGTTGTTTTAGTGGGATGGATA
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Coding sequence (CDS) from alignment at scaffold_3:267168..268649-

>mRNA_97 ID=mRNA_97|Name=jgi.p|Nanoce1779_2|576215|organism=Nannochloropsis oceanica|type=CDS|length=1314bp|location=Sequence derived from alignment at scaffold_3:267168..268649- (Nannochloropsis oceanica)
ATGTCTAGTCCTTTGTACAGCGGCTCTCCGGGTCGCCAAAGCCACCGGGA
CCGGGACAGAGGCCACCGATATAGCAGTGGAGGAGGCAAGCGCAGCAGGG
AGCGGAGCAGGGAGCGGAGCCGGGAGCGTGGGAACACCGGCACTACCAGC
GGTAGTGATAGCAAGCATCAGAGTTCCTCACTACGACGGCGAAGCAAGAC
GAAGGATGGGCATGACAGTTTTACTGGCGGACGGTCGTCTCTAGGCGGCT
CCTCGTCCTCGTCCTCATCCTCCTTGTCTTCCCACTCCCGCCCGCCCATC
CACGAAAGCAGTAACAGCGGCGGCGGCGGCAGCAACAGCAATTATCGACG
CACCCACCAACCACCACCCCTCTCCTCCGAAACTCGCCAAGCTTACTTTA
TCAAATCATGTGCCTTTCTTGTGGCCTTGAGCAAAGAGCTCCACCTTGGG
AAGGTCGCTACACACACTGCTCTCGTCTTCTTCCACCGCTTTTTCAAACA
CCAATCATTCCAAGCCCACGACCGCCTTCTCGTCGCCACCGCCTGCATCT
ACCTTGCAGCCAAGACTGAAGAACGGAATAACGTCAAGCTCTCTATTATC
GTCGTCCAGTACTTAAAAAAAATAGACGTCCTTCCAGATGAAGTCGACCC
TCTCGAATACAACCGCAACGCCGTCGCCCGCGAAGCGGTCCCGGCATGGA
AATTCCGTGTCATCTCCTATGAGAGGTGTCTTTTGTACACGATCGCTTTT
GATTTGACCGTCACCCATCCCTTCAGGACCTTGCAGGACATGATGAAAAC
TGTGCGGGACGTCATGGCGGAGGAAGGAAGGAAGGGCGGGCCTGCAGCAA
TAGGGATGGGTGCCGGGAGCAATATCACATCTTCGTTGACCTTCTCGCAA
CAACAACAACAGCAACAGCCCTTTGACCACCGGACATTCTTTTCCCAAGC
CTGTAAATTCCTTAATGATAGCTTCTGCAACCCCTCCCTTATTGACGTCG
AGCCCTCCTACTCCGCCGCCCTGGCCCTATACCTCACCACCCTCCTTTAC
GGCATAAAGCCCCCGACGAATAAAGGCACTTGGCTTGAAATCTTTCATGT
CCAAGACGAAGCCCGTTTCCTCTCTGATTGTTCGCTGGCGATTCAAATGT
ATGGGGAAGAGAATTCAAATTTTCAAATTTTGAATGTTGTAGACGTACCC
GAGCCAAGTTCCGTTCCTTTGGCGGTGACGAGGTCGGGTGTTCATTCCCG
AGAACTGGAAATATCCTCTCTGTATGGAGGAGGAGGGTTGAGACGGTTGT
CACCGTTGTTTTAG
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Synonyms
Publications