jgi.p|Nanoce1779_2|575972, mRNA_31 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|575972
Unique NamemRNA_31
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length637
Alignment locationscaffold_3:96357..96993 -

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Properties
Property NameValue
TranscriptId576058
TrackFilteredModels2
ProteinId575972
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:96357..96993 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575972gene_31Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575972mRNA_31-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_31CDS_31Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_31 ID=mRNA_31|Name=jgi.p|Nanoce1779_2|575972|organism=Nannochloropsis oceanica|type=mRNA|length=637bp
CCGCTGACGTGGGCCGTTCTTCCTCCGGCTCTCCTCCCTCCCTCCCTTCC
TCTTTCCCTCCCTCCCATCCTCCATCTTCCTCCTCCTCTCCTTCAAGCCA
CTTGCCGTCCAATCCCGCATCCATGTACCCCGCGCCTGCCGGGGCACAGC
TGACGCTACAGCTGCCGCGATCCGAAGTTACAAATGAGGAGGAAGGCAAA
CCCAGCCGTCCTGAGGCTGCTCCTGCTGCTGCTGCTACTGCTGCTGATGC
CGCTGTTGCTGCTCCTTCCTTGCTCCGCGTCGAGAAGTGGGCCGGCGGTG
GTAGAGCCAAGGCAGGGGGCGGCATTCCTGCTCCGCTCTTCGTCCCATCG
ACGACCACGTGAACGTCCTTTTTTGTTCCTCCCTCCCAGGCTGCAGGAGC
ACGGCAGGACGGTGATCGATGCGAGCGACGCGGGCGACGGAGTGGGGGAA
GGTCGCAGTAGTAGACAGGGCTAGACCAGAGTGCGAGGGGAGAGAGGAAA
GTAGGATGACCCAACAGATGCCACCATCGTGCCAAGCGCGAGCCCCCTCC
CCTGCTGGTGCTGCTGCTACTGCTGCTGTTGCTGTTGCTGCTTCTCGAAC
TGCAACTGCTGAAGCCACTGCTGCTGTTGCGGCTGCT
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protein sequence of jgi.p|Nanoce1779_2|575972

>mRNA_31-protein ID=mRNA_31-protein|Name=jgi.p|Nanoce1779_2|575972|organism=Nannochloropsis oceanica|type=polypeptide|length=97bp
MRRKANPAVLRLLLLLLLLLLMPLLLLLPCSASRSGPAVVEPRQGAAFLL
RSSSHRRPRERPFLFLPPRLQEHGRTVIDASDAGDGVGEGRSSRQG*
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mRNA from alignment at scaffold_3:96357..96993-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_31 ID=mRNA_31|Name=jgi.p|Nanoce1779_2|575972|organism=Nannochloropsis oceanica|type=mRNA|length=637bp|location=Sequence derived from alignment at scaffold_3:96357..96993- (Nannochloropsis oceanica)
CCGCTGACGTGGGCCGTTCTTCCTCCGGCTCTCCTCCCTCCCTCCCTTCC
TCTTTCCCTCCCTCCCATCCTCCATCTTCCTCCTCCTCTCCTTCAAGCCA
CTTGCCGTCCAATCCCGCATCCATGTACCCCGCGCCTGCCGGGGCACAGC
TGACGCTACAGCTGCCGCGATCCGAAGTTACAAATGAGGAGGAAGGCAAA
CCCAGCCGTCCTGAGGCTGCTCCTGCTGCTGCTGCTACTGCTGCTGATGC
CGCTGTTGCTGCTCCTTCCTTGCTCCGCGTCGAGAAGTGGGCCGGCGGTG
GTAGAGCCAAGGCAGGGGGCGGCATTCCTGCTCCGCTCTTCGTCCCATCG
ACGACCACGTGAACGTCCTTTTTTGTTCCTCCCTCCCAGGCTGCAGGAGC
ACGGCAGGACGGTGATCGATGCGAGCGACGCGGGCGACGGAGTGGGGGAA
GGTCGCAGTAGTAGACAGGGCTAGACCAGAGTGCGAGGGGAGAGAGGAAA
GTAGGATGACCCAACAGATGCCACCATCGTGCCAAGCGCGAGCCCCCTCC
CCTGCTGGTGCTGCTGCTACTGCTGCTGTTGCTGTTGCTGCTTCTCGAAC
TGCAACTGCTGAAGCCACTGCTGCTGTTGCGGCTGCT
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Coding sequence (CDS) from alignment at scaffold_3:96357..96993-

>mRNA_31 ID=mRNA_31|Name=jgi.p|Nanoce1779_2|575972|organism=Nannochloropsis oceanica|type=CDS|length=291bp|location=Sequence derived from alignment at scaffold_3:96357..96993- (Nannochloropsis oceanica)
ATGAGGAGGAAGGCAAACCCAGCCGTCCTGAGGCTGCTCCTGCTGCTGCT
GCTACTGCTGCTGATGCCGCTGTTGCTGCTCCTTCCTTGCTCCGCGTCGA
GAAGTGGGCCGGCGGTGGTAGAGCCAAGGCAGGGGGCGGCATTCCTGCTC
CGCTCTTCGTCCCATCGACGACCACGTGAACGTCCTTTTTTGTTCCTCCC
TCCCAGGCTGCAGGAGCACGGCAGGACGGTGATCGATGCGAGCGACGCGG
GCGACGGAGTGGGGGAAGGTCGCAGTAGTAGACAGGGCTAG
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Synonyms
Publications