jgi.p|Nanoce1779_2|577131, mRNA_368 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|577131
Unique Name	mRNA_368
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1939
Alignment location	scaffold_3:918736..920915 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	577217
Track	FilteredModels2
ProteinId	577131

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:918736..920915 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577131	gene_368	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|577131	mRNA_368-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_368	CDS_368	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:918736..920915+
coding sequence from alignment at scaffold_3:918736..920915+

mRNA sequence

>mRNA_368 ID=mRNA_368|Name=jgi.p|Nanoce1779_2|577131|organism=Nannochloropsis oceanica|type=mRNA|length=1939bp
ACAGGGCTCTCACTACCTTGCGCAGGAGAGGGTGCACCTTGGAGAGAGCG
GGAGCCGGAGATAGGGATAGGAGACAGACGCGAAACTCATTGCCATCGCA
GGCTCGCTGCCATGTCGATTTCCGGCCTTTAAAAAAGCCGAACCCACCAC
ACGGAGCTCCCACTGAAAGCAGCACTCATACGGAGTCAAGACAAGCGTGG
TTACGCACATAAAATGCAACCTCCTCCCACCACCCCCCAGTCCACCGCCG
CGGTTGCCCTCGCCCAAGCCGCCTTCCATTATCGTGTCGTCTGTGAAGAT
GGTGCCTATGTCCGCGCCGGGCTCGAGCTGAGCTCCCGACACCTCTACAC
CATCGCAAGCCAAAGCACCGTTGAAGTCCTGGAACGCTGTGTCAACATCC
AAGGCCTGGCCCGTCTGCGTACTGCCGACGGCTGGATCTCTGAGATGCTT
AATCCTCTATCGGGGCAGCGGGGACCGATCGTTGAAGTAGTCCCTCTGCA
GCACCCTCTTAAATTCCGTATTCTGTTCCCTGGAGGCGCCCTGGTGCGAA
GCGGCATTGAAATTAGCACCAGTGTTGTGGGCACCATCCCCGTGGGGCAA
GAGATCATCGTGACAGACAAACGCTATTCAGATACACCATCTCACCGATG
TGTGCCTCGCTTGAAGCTGGCGGATGGTTCGGGATGGATTAGCGCGCGGA
TTAATGCTCCCCCACCAAATGAGACGGTCGTCGAACTTGTGGGCTTGGCT
AGCCAGGAGGAGGCGAGGGCATACAGCGCGGCGATCATCTGGCCGACAGC
AGCGACACCGGCGCACGGGGCAGGGATGTTAGAGGGAGAATCTATGGCCG
AGGAGCAATATGGGGAAAGGCATGCGGTGGATGGCGGCGAGAGGAGAAGA
TCCCTCGCCGCTTCTTCGGCGTCCTTGGTGGTGTTGCCTGTGAACAAGCA
AAACCGCCCCCGTCGTCATCATCAACACAACCAGCAGGATCACTATTACC
ACGTCATTGACGCCTCGGATAAGATTCGATGCTCCTTACAGCCCTACGAT
GACGACTTTAGTGCTACATCAGGCGCGGGCGACAATCACCCGCAGCAAGA
GCGGAGGCGTCAATCGAAGGAGGACCATTCTTGTCTCGTTTGCTTTAGCT
CTTATCGGAATTCTACATTTGTGCATGGAGAATCTGGACATATCGCTTGC
TGTTTGGAATGTGCACGCGTCCTGAAGGGTCGTGGGGATCCTTGCCCAGT
TTGCCGGCTGCCGATAGATTCTGTCATCCAGCACTTTTGGGCATAGAGTT
GCGATTTGCTTCTTGCCGTGTACGTGTTGCTTCTCTCTCGATCACGCATA
AACGTTCATCTCAAAACTTCTTTTCTTCTCTACCCCTCTTAACTCTCAAA
ACTCGGACAAGTGGATCTGGACGCTAGACATTTAATTATATAATCCCCTA
GAAAGCTACCTAGCTAGCCTTACATGCACGTGTATGTTTGTATGTAACGA
TCAGATGTACGTGTATTCCCCGTCACCATTTCATGTACATTTATTTATTT
GCTTTGGTGTCGATTCATGTTGCACACTTAGATATATATGTATCACTGTG
TTCAGACTTTATTCCGCGTGAGAGGGGACTACGAGAAGAAGATGATGAAG
GGGGAGTAGAAAAATCATTCGTCGTGTCGATTAGACATAAGAAGAAAAAA
CGTAACTCGGCAAGTATGCGTGCAACAAGTCAGCCGACCATAGGCCCTAC
GCGTGGACACATGGGGACAAAGGGTCGAAAAGTAAGATCAGGGAAATCGG
GACCAAGAAGACAACAAATCTCTCAAATCGACATAGACGACAGGACTCAA
GGAATTAAATTTAGTTTCGGGGTCGACAGGTAGTACACAAATAAAAAGAA
GAGACGACTGAAGAAGAAAAAAAGAAGGCAAAATGATAA

protein sequence of jgi.p|Nanoce1779_2|577131

>mRNA_368-protein ID=mRNA_368-protein|Name=jgi.p|Nanoce1779_2|577131|organism=Nannochloropsis oceanica|type=polypeptide|length=361bp
MQPPPTTPQSTAAVALAQAAFHYRVVCEDGAYVRAGLELSSRHLYTIASQ
STVEVLERCVNIQGLARLRTADGWISEMLNPLSGQRGPIVEVVPLQHPLK
FRILFPGGALVRSGIEISTSVVGTIPVGQEIIVTDKRYSDTPSHRCVPRL
KLADGSGWISARINAPPPNETVVELVGLASQEEARAYSAAIIWPTAATPA
HGAGMLEGESMAEEQYGERHAVDGGERRRSLAASSASLVVLPVNKQNRPR
RHHQHNQQDHYYHVIDASDKIRCSLQPYDDDFSATSGAGDNHPQQERRRQ
SKEDHSCLVCFSSYRNSTFVHGESGHIACCLECARVLKGRGDPCPVCRLP
IDSVIQHFWA*

mRNA from alignment at scaffold_3:918736..920915+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_368 ID=mRNA_368|Name=jgi.p|Nanoce1779_2|577131|organism=Nannochloropsis oceanica|type=mRNA|length=2180bp|location=Sequence derived from alignment at scaffold_3:918736..920915+ (Nannochloropsis oceanica)
ACAGGGCTCTCACTACCTTGCGCAGGAGAGGGTGCACCTTGGAGAGAGCG
GGAGCCGGAGATAGGGATAGGAGACAGACGCGAAACTCATTGCCATCGCA
GGCTCGCTGCCATGTCGATTTCCGGGTAAGAAGAAGGACAGAAGATAATA
TAAAAGGATAAGGATATTATCATAAGAAATGTGGGTTCGTACCACGGCTG
CCTGCCCATGGGTGACTAGGCTGAAAAAAGCACGTGGAGGCGGATACGAT
TTTACAGTGCAGCACCTGCATGCCAGGTCCTCTGCAGCTGCACACAAACA
TCTCCACCAAAAGTCAACCAACACTCACATGCATTTTTTCCTTTTCCTTT
GATCTTCCCCCATCAGCCTTTAAAAAAGCCGAACCCACCACACGGAGCTC
CCACTGAAAGCAGCACTCATACGGAGTCAAGACAAGCGTGGTTACGCACA
TAAAATGCAACCTCCTCCCACCACCCCCCAGTCCACCGCCGCGGTTGCCC
TCGCCCAAGCCGCCTTCCATTATCGTGTCGTCTGTGAAGATGGTGCCTAT
GTCCGCGCCGGGCTCGAGCTGAGCTCCCGACACCTCTACACCATCGCAAG
CCAAAGCACCGTTGAAGTCCTGGAACGCTGTGTCAACATCCAAGGCCTGG
CCCGTCTGCGTACTGCCGACGGCTGGATCTCTGAGATGCTTAATCCTCTA
TCGGGGCAGCGGGGACCGATCGTTGAAGTAGTCCCTCTGCAGCACCCTCT
TAAATTCCGTATTCTGTTCCCTGGAGGCGCCCTGGTGCGAAGCGGCATTG
AAATTAGCACCAGTGTTGTGGGCACCATCCCCGTGGGGCAAGAGATCATC
GTGACAGACAAACGCTATTCAGATACACCATCTCACCGATGTGTGCCTCG
CTTGAAGCTGGCGGATGGTTCGGGATGGATTAGCGCGCGGATTAATGCTC
CCCCACCAAATGAGACGGTCGTCGAACTTGTGGGCTTGGCTAGCCAGGAG
GAGGCGAGGGCATACAGCGCGGCGATCATCTGGCCGACAGCAGCGACACC
GGCGCACGGGGCAGGGATGTTAGAGGGAGAATCTATGGCCGAGGAGCAAT
ATGGGGAAAGGCATGCGGTGGATGGCGGCGAGAGGAGAAGATCCCTCGCC
GCTTCTTCGGCGTCCTTGGTGGTGTTGCCTGTGAACAAGCAAAACCGCCC
CCGTCGTCATCATCAACACAACCAGCAGGATCACTATTACCACGTCATTG
ACGCCTCGGATAAGATTCGATGCTCCTTACAGCCCTACGATGACGACTTT
AGTGCTACATCAGGCGCGGGCGACAATCACCCGCAGCAAGAGCGGAGGCG
TCAATCGAAGGAGGACCATTCTTGTCTCGTTTGCTTTAGCTCTTATCGGA
ATTCTACATTTGTGCATGGAGAATCTGGACATATCGCTTGCTGTTTGGAA
TGTGCACGCGTCCTGAAGGGTCGTGGGGATCCTTGCCCAGTTTGCCGGCT
GCCGATAGATTCTGTCATCCAGCACTTTTGGGCATAGAGTTGCGATTTGC
TTCTTGCCGTGTACGTGTTGCTTCTCTCTCGATCACGCATAAACGTTCAT
CTCAAAACTTCTTTTCTTCTCTACCCCTCTTAACTCTCAAAACTCGGACA
AGTGGATCTGGACGCTAGACATTTAATTATATAATCCCCTAGAAAGCTAC
CTAGCTAGCCTTACATGCACGTGTATGTTTGTATGTAACGATCAGATGTA
CGTGTATTCCCCGTCACCATTTCATGTACATTTATTTATTTGCTTTGGTG
TCGATTCATGTTGCACACTTAGATATATATGTATCACTGTGTTCAGACTT
TATTCCGCGTGAGAGGGGACTACGAGAAGAAGATGATGAAGGGGGAGTAG
AAAAATCATTCGTCGTGTCGATTAGACATAAGAAGAAAAAACGTAACTCG
GCAAGTATGCGTGCAACAAGTCAGCCGACCATAGGCCCTACGCGTGGACA
CATGGGGACAAAGGGTCGAAAAGTAAGATCAGGGAAATCGGGACCAAGAA
GACAACAAATCTCTCAAATCGACATAGACGACAGGACTCAAGGAATTAAA
TTTAGTTTCGGGGTCGACAGGTAGTACACAAATAAAAAGAAGAGACGACT
GAAGAAGAAAAAAAGAAGGCAAAATGATAA

Coding sequence (CDS) from alignment at scaffold_3:918736..920915+

>mRNA_368 ID=mRNA_368|Name=jgi.p|Nanoce1779_2|577131|organism=Nannochloropsis oceanica|type=CDS|length=1083bp|location=Sequence derived from alignment at scaffold_3:918736..920915+ (Nannochloropsis oceanica)
ATGCAACCTCCTCCCACCACCCCCCAGTCCACCGCCGCGGTTGCCCTCGC
CCAAGCCGCCTTCCATTATCGTGTCGTCTGTGAAGATGGTGCCTATGTCC
GCGCCGGGCTCGAGCTGAGCTCCCGACACCTCTACACCATCGCAAGCCAA
AGCACCGTTGAAGTCCTGGAACGCTGTGTCAACATCCAAGGCCTGGCCCG
TCTGCGTACTGCCGACGGCTGGATCTCTGAGATGCTTAATCCTCTATCGG
GGCAGCGGGGACCGATCGTTGAAGTAGTCCCTCTGCAGCACCCTCTTAAA
TTCCGTATTCTGTTCCCTGGAGGCGCCCTGGTGCGAAGCGGCATTGAAAT
TAGCACCAGTGTTGTGGGCACCATCCCCGTGGGGCAAGAGATCATCGTGA
CAGACAAACGCTATTCAGATACACCATCTCACCGATGTGTGCCTCGCTTG
AAGCTGGCGGATGGTTCGGGATGGATTAGCGCGCGGATTAATGCTCCCCC
ACCAAATGAGACGGTCGTCGAACTTGTGGGCTTGGCTAGCCAGGAGGAGG
CGAGGGCATACAGCGCGGCGATCATCTGGCCGACAGCAGCGACACCGGCG
CACGGGGCAGGGATGTTAGAGGGAGAATCTATGGCCGAGGAGCAATATGG
GGAAAGGCATGCGGTGGATGGCGGCGAGAGGAGAAGATCCCTCGCCGCTT
CTTCGGCGTCCTTGGTGGTGTTGCCTGTGAACAAGCAAAACCGCCCCCGT
CGTCATCATCAACACAACCAGCAGGATCACTATTACCACGTCATTGACGC
CTCGGATAAGATTCGATGCTCCTTACAGCCCTACGATGACGACTTTAGTG
CTACATCAGGCGCGGGCGACAATCACCCGCAGCAAGAGCGGAGGCGTCAA
TCGAAGGAGGACCATTCTTGTCTCGTTTGCTTTAGCTCTTATCGGAATTC
TACATTTGTGCATGGAGAATCTGGACATATCGCTTGCTGTTTGGAATGTG
CACGCGTCCTGAAGGGTCGTGGGGATCCTTGCCCAGTTTGCCGGCTGCCG
ATAGATTCTGTCATCCAGCACTTTTGGGCATAG

Synonyms

Publications