jgi.p|Nanoce1779_2|577388, mRNA_464 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|577388
Unique NamemRNA_464
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length708
Alignment locationscaffold_3:1131640..1132595 +

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Properties
Property NameValue
TranscriptId577474
TrackFilteredModels2
ProteinId577388
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:1131640..1132595 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577388gene_464Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|577388mRNA_464-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_464CDS_464Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_464 ID=mRNA_464|Name=jgi.p|Nanoce1779_2|577388|organism=Nannochloropsis oceanica|type=mRNA|length=708bp
ACAGCCCACAGGACTCAAACACAAGGTTTCTAACAAACAGACGCAAGAGT
AGCGGGTTGTTTTTTCCTCCTCTTCCCAGCCATGGCCGCAATCAAAGCGG
TAAGCGTGCCAGTCAAGCTACTAAAGGAAGGCGAAGGCCACGTGGTGACA
GCAGAGCTCAAGTCGGGGGAGGTATATCGCGGGCTTTTGGTCGAGTCCGA
GGACACAATGAACGTGCATTTGTCGGACGTGACGCATACGGCGCGCAACG
GCAAGGTCCGTAAATTGGAGCAAGTGTATTTGCGAGGGAGCCATCTGAAG
CTTATTGTATTGCCTGATATTTTGAAGAACGCACCGGTGTTTAAGAAGGT
GCAAGGGATGAAGAAGAAGGAGTCGAATAAGACAGCGGGCCGAGGCAGAG
GGGGAGCATTCCGGGGGAAGAAGAGAAAGGCTGGTCAGTAAGTAAAGAGT
AAAAGAGAAGCAAGATATGCAAAGGGGATCTTAGTTGGGCCTGTGTGTGT
TTATGATGGATGGAAGAGTTTCCTTATTTTAACTGCGATGGAATTGCTGC
ATTGGCCAATGGACAAAGGGCGTATATTCGTCTCCTCCCTGCTGGCACCT
ATTTGAAAAAGGCAATGAAACGAGTGCAACACAGACAGACAAGAGCAACA
GCTACAATCAGAAGAAAAAAGAAAAAGAAAGAAATTAAATGTCACTTGTG
TAAAACAC
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protein sequence of jgi.p|Nanoce1779_2|577388

>mRNA_464-protein ID=mRNA_464-protein|Name=jgi.p|Nanoce1779_2|577388|organism=Nannochloropsis oceanica|type=polypeptide|length=120bp
MAAIKAVSVPVKLLKEGEGHVVTAELKSGEVYRGLLVESEDTMNVHLSDV
THTARNGKVRKLEQVYLRGSHLKLIVLPDILKNAPVFKKVQGMKKKESNK
TAGRGRGGAFRGKKRKAGQ*
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mRNA from alignment at scaffold_3:1131640..1132595+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_464 ID=mRNA_464|Name=jgi.p|Nanoce1779_2|577388|organism=Nannochloropsis oceanica|type=mRNA|length=956bp|location=Sequence derived from alignment at scaffold_3:1131640..1132595+ (Nannochloropsis oceanica)
ACAGCCCACAGGACTCAAACACAAGGTTTCTAACAAACAGACGCAAGAGT
AGCGGGTTGTTTTTTCCTCCTCTTCCCAGCCATGGCCGCAATCAAAGGTA
CGTCCGCTCGGCCCCCCTCTTCTACTCCACCTCCTCACACAGCACCAGCA
TAATCCAGACCCTAGCAGGCAAGATGAGGATCAGAACGGGGGGCGTGTAC
ACAGTTAATACGCACGTATGACGATGATGGTTTCGCGGCGGCCTGTGCCA
TTTTGTCGGAGGCCGATGTCACTGTCTCTCTCGGTCCATACCCCACCACT
CATCTCCCGCTTCTTTTCCGCATCTCCCCACCCTCCCTCCCACAGCGGTA
AGCGTGCCAGTCAAGCTACTAAAGGAAGGCGAAGGCCACGTGGTGACAGC
AGAGCTCAAGTCGGGGGAGGTATATCGCGGGCTTTTGGTCGAGTCCGAGG
ACACAATGAACGTGCATTTGTCGGACGTGACGCATACGGCGCGCAACGGC
AAGGTCCGTAAATTGGAGCAAGTGTATTTGCGAGGGAGCCATCTGAAGCT
TATTGTATTGCCTGATATTTTGAAGAACGCACCGGTGTTTAAGAAGGTGC
AAGGGATGAAGAAGAAGGAGTCGAATAAGACAGCGGGCCGAGGCAGAGGG
GGAGCATTCCGGGGGAAGAAGAGAAAGGCTGGTCAGTAAGTAAAGAGTAA
AAGAGAAGCAAGATATGCAAAGGGGATCTTAGTTGGGCCTGTGTGTGTTT
ATGATGGATGGAAGAGTTTCCTTATTTTAACTGCGATGGAATTGCTGCAT
TGGCCAATGGACAAAGGGCGTATATTCGTCTCCTCCCTGCTGGCACCTAT
TTGAAAAAGGCAATGAAACGAGTGCAACACAGACAGACAAGAGCAACAGC
TACAATCAGAAGAAAAAAGAAAAAGAAAGAAATTAAATGTCACTTGTGTA
AAACAC
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Coding sequence (CDS) from alignment at scaffold_3:1131640..1132595+

>mRNA_464 ID=mRNA_464|Name=jgi.p|Nanoce1779_2|577388|organism=Nannochloropsis oceanica|type=CDS|length=720bp|location=Sequence derived from alignment at scaffold_3:1131640..1132595+ (Nannochloropsis oceanica)
ATGGCCGCAATCAAAGCGGTAAGCGTGCCAGTCAAGCTACTAAAGGAAGG
CGAAGGCCACGTGGTGACAGCAGAGCTCAAGTCGGGGGAGGTATATCGCG
GGCTTTTGGTCGAGTCCGAGGACACAATGAACGTGCATTTGTCGGACGTG
ACGCATACGGCGCGCAACGGCAAGGTCCGTAAATTGGAGCAAGTGTATTT
GCGAGGGAGCCATCTGAAGCTTATTGTATTGCCTGATATTTTGAAGAACG
CACCGGTGTTTAAGAAGGTGCAAGGGATGAAGAAGAAGGAGTCGAATAAG
ACAGCGGGCCGAGGCAGAGGGGGAGCATTCCGGGGGAAGAAGAGAAAGGC
TGGTCAGTAAATGGCCGCAATCAAAGCGGTAAGCGTGCCAGTCAAGCTAC
TAAAGGAAGGCGAAGGCCACGTGGTGACAGCAGAGCTCAAGTCGGGGGAG
GTATATCGCGGGCTTTTGGTCGAGTCCGAGGACACAATGAACGTGCATTT
GTCGGACGTGACGCATACGGCGCGCAACGGCAAGGTCCGTAAATTGGAGC
AAGTGTATTTGCGAGGGAGCCATCTGAAGCTTATTGTATTGCCTGATATT
TTGAAGAACGCACCGGTGTTTAAGAAGGTGCAAGGGATGAAGAAGAAGGA
GTCGAATAAGACAGCGGGCCGAGGCAGAGGGGGAGCATTCCGGGGGAAGA
AGAGAAAGGCTGGTCAGTAA
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Synonyms
Publications