jgi.p|Nanoce1779_2|605829, mRNA_9240 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|605829
Unique Name	mRNA_9240
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2701
Alignment location	scaffold_33:81270..83970 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	605915
Track	FilteredModels2
ProteinId	605829

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_33	supercontig	scaffold_33:81270..83970 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|605829	gene_9240	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|605829	mRNA_9240-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9240	CDS_9240	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_33:81270..83970+
coding sequence from alignment at scaffold_33:81270..83970+

mRNA sequence

>mRNA_9240 ID=mRNA_9240|Name=jgi.p|Nanoce1779_2|605829|organism=Nannochloropsis oceanica|type=mRNA|length=2701bp
ACAGGGATAATTAGCTATTTGCCCCTTGGACCTAGGCCAGACCATGTGGA
TCAGCAAGACGTATCTGTGCTACTTGGCAGCAGCTGTCTGGGTCATACTT
ACGTTCATCGCCCATGATCAAATGTTGCACCTAGGTGGCTTGAGAAGCAG
CAGAGCATATACATCATCAAGTGACGATCGGGGTATTCATATGGACAAGG
ACTACCATTCTACACTCGCTCCTCTCACCGACGGGGTTTCGGATACAGAT
GACAACAAGGCCAACGTGGTGAAGGAAGGGTGTAACCGGAACCAGGGCTT
GATATCGACGCCAGAAGATGTGAGCGGGACGCCTCCTTTAGTTACTGTAT
GCATTCCAGTGTTTGAGGGATCACTCACGTTAGAAGAGACCGTGCGAAGC
GTGTCCAACCAGACATACAGCAATATTGAGTTGCTCATATCTTTTGACCC
GTGTGCTGACACGGACTTATGCAAGGATTTTGTCGCAAAACTGGAGAAAC
ATCTTCGAGAGACCGGCCAGCAAAATATTCACATCACGACGTTCAGTCAC
GAAGCGCATTTGGGGTGGATATCAAACGTGAACTTTTTGCTGCTTCAGGC
ACAAGGTGCTTTTGTGAGCATTTTGCCCGACGACGATACTATTCCATCGA
ACTACTACGAAGAGTTGGCGGCCTGTTTGACGGCCAATCCTGCCGCCATC
AACTGTTTCCCCTACGTTGTGTGCAAAGGTGTCTCTGATCGCCAGGAGGA
GAAGAGAAGGGCGAAACTTCCTTCCACCTCTGCAGCTTCGACTTCCGCCT
ATCAGGTTTCTTGCCAAGAAATACATCAAAAAAGCATCCGCGGTTCAAGG
GAAGACCGCATATATGCAGCCGTGAAACATCATAAAGGAGTGAGTTTCCG
CGGCCTAGTGAGAAACGGCCAACACCAACAGCTACCGGGGTGGACGGCAG
ATGGGCTGTCAATCGGCAACAATATGCGCGACTTCTTGCTTCAGCCGACC
CATAACGACTACTACGTCGCAGATATAACACAAATTATGCAGCACGCAGT
TGCAGGGGACTTAATTGCCGTTGATGTCCCCTATTTCAAATTGTTTCAAC
CCAACCAGATTCATCGCTTCCAAATAAATAGCATGTCCGCTGAGGATAAG
ATGCAGGCGTGGGTCGACCATTTTGCGAATATCTACAATGTAGCCCACTT
ATATACGTCGTCCAGCCAAAACTTCTATCAAGCATGTACAGACAATCTAC
TGACAACTTTACCAAGGGTTGCTGGCATTTCTGCAACTCCTGAGCCCGAA
AAAATTCTGGCCATCTTTCGACACAAAATAAGCGAGGCAAAGAGCAACAA
GAAGCGTGTCGCCGTATTGGGAGGAGGGATTCAAGGCTGCACAATGGCAC
TTTTGTTTGAAAAACACGGATACGATGTGACAATCTTTGACAAGAGCACA
GATATACTGAATCGTGCAAGTAGCAACCAAGAAGGGAAGATCCATCTGGG
CTTGGTTTACAGTGGTGACCAGACCCTGAAAACTGGGGCACGAATGTTGG
AGAGCGCTCTACGGTTTTCCGGCTACTTGGAGTACCTTGTAGGAGAAACT
ATTGACTGGGCCAAGTGGAAGTCATCCAAGTTTCATTATATGGTACCCTA
TGACTCAATTCTTTCCCCAACGGAGTTGGAGTTGTACTTCAACAACTTGC
AAGCCATCTACTACGAAATGCTCAAGGGTGACCCGACCCTCTCTTACCTG
GGCGAACGCCCTCAGCGACTATACCGTCCAATCCCGTTAAATAAAACCTT
GGTGAACGAGTCCTTCTTCGAAGCAGCCTTCGAGTCAGAGGAATACGCCA
TTTCACACTCCGAGTTAAAGCTTGCCATCAAGCGGGCATTGAGATCGAAG
CACACAATACACACACTTTTGAATACGATTGTCCTTGAAACACGTAGGGA
GGTTGGAAACTTTTCTGCCCTTGACCGGAATACGACGTTCCAAATCGTCA
CAAATCTTGGGGTTCACGGAGGATTTGACAAGGTTGTCAATTGTCTTTGG
GAGGGACGCCGCGAAATCGACCAGCAAATGGGTATTCCTGCTTGGAGCGG
CAACAATGTTCGCTTGAAATTTGGTATCAAGACAGAATATATGGAGCCGT
TGGCCACAATGCCAAGCATGACGATTGTCAACGGTCCCTTTGGGGATTTT
GTAAACTATCCCGGAGATCAGAAAATGTATTTCAGTTGGTATCCAGTCAG
CATGCATGGGATGGTCGTGGACGAAAAAATACCCGCAGAACTACACGACA
TTGCAGACGGGGCGATACCAAGGGAATTAGCGAGCTTTCAAATTGATTCT
CATCAGCAAAGTTTCGACGCCATGCTGCTTCCCCAAGGACCAGCCCTTGA
CTTCAAGTGCCCCGAGCTGGTGGGTGGCTTTATTTTGGGGAATGGCAAGA
GTGACATTCAGAATCGGGACAGCTTGCTTCACACTCGTTGTGATGAGCCA
ATCTACCATGAGGACGGCTATTTCTCTATTTCGACGCAAAAGTTCACCTC
AGCCCCGTACCATGCATACTTGCTTGAAAAAAGATTCCTTTCTCGGAATG
GAAAGGAAAATCGATGACAAGGTCGTCCGAGACCAAAAGGAGAAAATCTT
GAATGTTTTTATTGAATATGTATAGATCTATCTACCCCCCAAAAAAACGA
C

protein sequence of jgi.p|Nanoce1779_2|605829

>mRNA_9240-protein ID=mRNA_9240-protein|Name=jgi.p|Nanoce1779_2|605829|organism=Nannochloropsis oceanica|type=polypeptide|length=858bp
MWISKTYLCYLAAAVWVILTFIAHDQMLHLGGLRSSRAYTSSSDDRGIHM
DKDYHSTLAPLTDGVSDTDDNKANVVKEGCNRNQGLISTPEDVSGTPPLV
TVCIPVFEGSLTLEETVRSVSNQTYSNIELLISFDPCADTDLCKDFVAKL
EKHLRETGQQNIHITTFSHEAHLGWISNVNFLLLQAQGAFVSILPDDDTI
PSNYYEELAACLTANPAAINCFPYVVCKGVSDRQEEKRRAKLPSTSAAST
SAYQVSCQEIHQKSIRGSREDRIYAAVKHHKGVSFRGLVRNGQHQQLPGW
TADGLSIGNNMRDFLLQPTHNDYYVADITQIMQHAVAGDLIAVDVPYFKL
FQPNQIHRFQINSMSAEDKMQAWVDHFANIYNVAHLYTSSSQNFYQACTD
NLLTTLPRVAGISATPEPEKILAIFRHKISEAKSNKKRVAVLGGGIQGCT
MALLFEKHGYDVTIFDKSTDILNRASSNQEGKIHLGLVYSGDQTLKTGAR
MLESALRFSGYLEYLVGETIDWAKWKSSKFHYMVPYDSILSPTELELYFN
NLQAIYYEMLKGDPTLSYLGERPQRLYRPIPLNKTLVNESFFEAAFESEE
YAISHSELKLAIKRALRSKHTIHTLLNTIVLETRREVGNFSALDRNTTFQ
IVTNLGVHGGFDKVVNCLWEGRREIDQQMGIPAWSGNNVRLKFGIKTEYM
EPLATMPSMTIVNGPFGDFVNYPGDQKMYFSWYPVSMHGMVVDEKIPAEL
HDIADGAIPRELASFQIDSHQQSFDAMLLPQGPALDFKCPELVGGFILGN
GKSDIQNRDSLLHTRCDEPIYHEDGYFSISTQKFTSAPYHAYLLEKRFLS
RNGKENR*

mRNA from alignment at scaffold_33:81270..83970+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9240 ID=mRNA_9240|Name=jgi.p|Nanoce1779_2|605829|organism=Nannochloropsis oceanica|type=mRNA|length=2701bp|location=Sequence derived from alignment at scaffold_33:81270..83970+ (Nannochloropsis oceanica)
ACAGGGATAATTAGCTATTTGCCCCTTGGACCTAGGCCAGACCATGTGGA
TCAGCAAGACGTATCTGTGCTACTTGGCAGCAGCTGTCTGGGTCATACTT
ACGTTCATCGCCCATGATCAAATGTTGCACCTAGGTGGCTTGAGAAGCAG
CAGAGCATATACATCATCAAGTGACGATCGGGGTATTCATATGGACAAGG
ACTACCATTCTACACTCGCTCCTCTCACCGACGGGGTTTCGGATACAGAT
GACAACAAGGCCAACGTGGTGAAGGAAGGGTGTAACCGGAACCAGGGCTT
GATATCGACGCCAGAAGATGTGAGCGGGACGCCTCCTTTAGTTACTGTAT
GCATTCCAGTGTTTGAGGGATCACTCACGTTAGAAGAGACCGTGCGAAGC
GTGTCCAACCAGACATACAGCAATATTGAGTTGCTCATATCTTTTGACCC
GTGTGCTGACACGGACTTATGCAAGGATTTTGTCGCAAAACTGGAGAAAC
ATCTTCGAGAGACCGGCCAGCAAAATATTCACATCACGACGTTCAGTCAC
GAAGCGCATTTGGGGTGGATATCAAACGTGAACTTTTTGCTGCTTCAGGC
ACAAGGTGCTTTTGTGAGCATTTTGCCCGACGACGATACTATTCCATCGA
ACTACTACGAAGAGTTGGCGGCCTGTTTGACGGCCAATCCTGCCGCCATC
AACTGTTTCCCCTACGTTGTGTGCAAAGGTGTCTCTGATCGCCAGGAGGA
GAAGAGAAGGGCGAAACTTCCTTCCACCTCTGCAGCTTCGACTTCCGCCT
ATCAGGTTTCTTGCCAAGAAATACATCAAAAAAGCATCCGCGGTTCAAGG
GAAGACCGCATATATGCAGCCGTGAAACATCATAAAGGAGTGAGTTTCCG
CGGCCTAGTGAGAAACGGCCAACACCAACAGCTACCGGGGTGGACGGCAG
ATGGGCTGTCAATCGGCAACAATATGCGCGACTTCTTGCTTCAGCCGACC
CATAACGACTACTACGTCGCAGATATAACACAAATTATGCAGCACGCAGT
TGCAGGGGACTTAATTGCCGTTGATGTCCCCTATTTCAAATTGTTTCAAC
CCAACCAGATTCATCGCTTCCAAATAAATAGCATGTCCGCTGAGGATAAG
ATGCAGGCGTGGGTCGACCATTTTGCGAATATCTACAATGTAGCCCACTT
ATATACGTCGTCCAGCCAAAACTTCTATCAAGCATGTACAGACAATCTAC
TGACAACTTTACCAAGGGTTGCTGGCATTTCTGCAACTCCTGAGCCCGAA
AAAATTCTGGCCATCTTTCGACACAAAATAAGCGAGGCAAAGAGCAACAA
GAAGCGTGTCGCCGTATTGGGAGGAGGGATTCAAGGCTGCACAATGGCAC
TTTTGTTTGAAAAACACGGATACGATGTGACAATCTTTGACAAGAGCACA
GATATACTGAATCGTGCAAGTAGCAACCAAGAAGGGAAGATCCATCTGGG
CTTGGTTTACAGTGGTGACCAGACCCTGAAAACTGGGGCACGAATGTTGG
AGAGCGCTCTACGGTTTTCCGGCTACTTGGAGTACCTTGTAGGAGAAACT
ATTGACTGGGCCAAGTGGAAGTCATCCAAGTTTCATTATATGGTACCCTA
TGACTCAATTCTTTCCCCAACGGAGTTGGAGTTGTACTTCAACAACTTGC
AAGCCATCTACTACGAAATGCTCAAGGGTGACCCGACCCTCTCTTACCTG
GGCGAACGCCCTCAGCGACTATACCGTCCAATCCCGTTAAATAAAACCTT
GGTGAACGAGTCCTTCTTCGAAGCAGCCTTCGAGTCAGAGGAATACGCCA
TTTCACACTCCGAGTTAAAGCTTGCCATCAAGCGGGCATTGAGATCGAAG
CACACAATACACACACTTTTGAATACGATTGTCCTTGAAACACGTAGGGA
GGTTGGAAACTTTTCTGCCCTTGACCGGAATACGACGTTCCAAATCGTCA
CAAATCTTGGGGTTCACGGAGGATTTGACAAGGTTGTCAATTGTCTTTGG
GAGGGACGCCGCGAAATCGACCAGCAAATGGGTATTCCTGCTTGGAGCGG
CAACAATGTTCGCTTGAAATTTGGTATCAAGACAGAATATATGGAGCCGT
TGGCCACAATGCCAAGCATGACGATTGTCAACGGTCCCTTTGGGGATTTT
GTAAACTATCCCGGAGATCAGAAAATGTATTTCAGTTGGTATCCAGTCAG
CATGCATGGGATGGTCGTGGACGAAAAAATACCCGCAGAACTACACGACA
TTGCAGACGGGGCGATACCAAGGGAATTAGCGAGCTTTCAAATTGATTCT
CATCAGCAAAGTTTCGACGCCATGCTGCTTCCCCAAGGACCAGCCCTTGA
CTTCAAGTGCCCCGAGCTGGTGGGTGGCTTTATTTTGGGGAATGGCAAGA
GTGACATTCAGAATCGGGACAGCTTGCTTCACACTCGTTGTGATGAGCCA
ATCTACCATGAGGACGGCTATTTCTCTATTTCGACGCAAAAGTTCACCTC
AGCCCCGTACCATGCATACTTGCTTGAAAAAAGATTCCTTTCTCGGAATG
GAAAGGAAAATCGATGACAAGGTCGTCCGAGACCAAAAGGAGAAAATCTT
GAATGTTTTTATTGAATATGTATAGATCTATCTACCCCCCAAAAAAACGA
C

Coding sequence (CDS) from alignment at scaffold_33:81270..83970+

>mRNA_9240 ID=mRNA_9240|Name=jgi.p|Nanoce1779_2|605829|organism=Nannochloropsis oceanica|type=CDS|length=2574bp|location=Sequence derived from alignment at scaffold_33:81270..83970+ (Nannochloropsis oceanica)
ATGTGGATCAGCAAGACGTATCTGTGCTACTTGGCAGCAGCTGTCTGGGT
CATACTTACGTTCATCGCCCATGATCAAATGTTGCACCTAGGTGGCTTGA
GAAGCAGCAGAGCATATACATCATCAAGTGACGATCGGGGTATTCATATG
GACAAGGACTACCATTCTACACTCGCTCCTCTCACCGACGGGGTTTCGGA
TACAGATGACAACAAGGCCAACGTGGTGAAGGAAGGGTGTAACCGGAACC
AGGGCTTGATATCGACGCCAGAAGATGTGAGCGGGACGCCTCCTTTAGTT
ACTGTATGCATTCCAGTGTTTGAGGGATCACTCACGTTAGAAGAGACCGT
GCGAAGCGTGTCCAACCAGACATACAGCAATATTGAGTTGCTCATATCTT
TTGACCCGTGTGCTGACACGGACTTATGCAAGGATTTTGTCGCAAAACTG
GAGAAACATCTTCGAGAGACCGGCCAGCAAAATATTCACATCACGACGTT
CAGTCACGAAGCGCATTTGGGGTGGATATCAAACGTGAACTTTTTGCTGC
TTCAGGCACAAGGTGCTTTTGTGAGCATTTTGCCCGACGACGATACTATT
CCATCGAACTACTACGAAGAGTTGGCGGCCTGTTTGACGGCCAATCCTGC
CGCCATCAACTGTTTCCCCTACGTTGTGTGCAAAGGTGTCTCTGATCGCC
AGGAGGAGAAGAGAAGGGCGAAACTTCCTTCCACCTCTGCAGCTTCGACT
TCCGCCTATCAGGTTTCTTGCCAAGAAATACATCAAAAAAGCATCCGCGG
TTCAAGGGAAGACCGCATATATGCAGCCGTGAAACATCATAAAGGAGTGA
GTTTCCGCGGCCTAGTGAGAAACGGCCAACACCAACAGCTACCGGGGTGG
ACGGCAGATGGGCTGTCAATCGGCAACAATATGCGCGACTTCTTGCTTCA
GCCGACCCATAACGACTACTACGTCGCAGATATAACACAAATTATGCAGC
ACGCAGTTGCAGGGGACTTAATTGCCGTTGATGTCCCCTATTTCAAATTG
TTTCAACCCAACCAGATTCATCGCTTCCAAATAAATAGCATGTCCGCTGA
GGATAAGATGCAGGCGTGGGTCGACCATTTTGCGAATATCTACAATGTAG
CCCACTTATATACGTCGTCCAGCCAAAACTTCTATCAAGCATGTACAGAC
AATCTACTGACAACTTTACCAAGGGTTGCTGGCATTTCTGCAACTCCTGA
GCCCGAAAAAATTCTGGCCATCTTTCGACACAAAATAAGCGAGGCAAAGA
GCAACAAGAAGCGTGTCGCCGTATTGGGAGGAGGGATTCAAGGCTGCACA
ATGGCACTTTTGTTTGAAAAACACGGATACGATGTGACAATCTTTGACAA
GAGCACAGATATACTGAATCGTGCAAGTAGCAACCAAGAAGGGAAGATCC
ATCTGGGCTTGGTTTACAGTGGTGACCAGACCCTGAAAACTGGGGCACGA
ATGTTGGAGAGCGCTCTACGGTTTTCCGGCTACTTGGAGTACCTTGTAGG
AGAAACTATTGACTGGGCCAAGTGGAAGTCATCCAAGTTTCATTATATGG
TACCCTATGACTCAATTCTTTCCCCAACGGAGTTGGAGTTGTACTTCAAC
AACTTGCAAGCCATCTACTACGAAATGCTCAAGGGTGACCCGACCCTCTC
TTACCTGGGCGAACGCCCTCAGCGACTATACCGTCCAATCCCGTTAAATA
AAACCTTGGTGAACGAGTCCTTCTTCGAAGCAGCCTTCGAGTCAGAGGAA
TACGCCATTTCACACTCCGAGTTAAAGCTTGCCATCAAGCGGGCATTGAG
ATCGAAGCACACAATACACACACTTTTGAATACGATTGTCCTTGAAACAC
GTAGGGAGGTTGGAAACTTTTCTGCCCTTGACCGGAATACGACGTTCCAA
ATCGTCACAAATCTTGGGGTTCACGGAGGATTTGACAAGGTTGTCAATTG
TCTTTGGGAGGGACGCCGCGAAATCGACCAGCAAATGGGTATTCCTGCTT
GGAGCGGCAACAATGTTCGCTTGAAATTTGGTATCAAGACAGAATATATG
GAGCCGTTGGCCACAATGCCAAGCATGACGATTGTCAACGGTCCCTTTGG
GGATTTTGTAAACTATCCCGGAGATCAGAAAATGTATTTCAGTTGGTATC
CAGTCAGCATGCATGGGATGGTCGTGGACGAAAAAATACCCGCAGAACTA
CACGACATTGCAGACGGGGCGATACCAAGGGAATTAGCGAGCTTTCAAAT
TGATTCTCATCAGCAAAGTTTCGACGCCATGCTGCTTCCCCAAGGACCAG
CCCTTGACTTCAAGTGCCCCGAGCTGGTGGGTGGCTTTATTTTGGGGAAT
GGCAAGAGTGACATTCAGAATCGGGACAGCTTGCTTCACACTCGTTGTGA
TGAGCCAATCTACCATGAGGACGGCTATTTCTCTATTTCGACGCAAAAGT
TCACCTCAGCCCCGTACCATGCATACTTGCTTGAAAAAAGATTCCTTTCT
CGGAATGGAAAGGAAAATCGATGA

Synonyms

Publications