jgi.p|Nanoce1779_2|606349, mRNA_9313 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|606349
Unique NamemRNA_9313
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length381
Alignment locationscaffold_35:54247..54627 +

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Properties
Property NameValue
TranscriptId606435
TrackFilteredModels2
ProteinId606349
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_35supercontigscaffold_35:54247..54627 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606349gene_9313Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606349mRNA_9313-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9313CDS_9313Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9313 ID=mRNA_9313|Name=jgi.p|Nanoce1779_2|606349|organism=Nannochloropsis oceanica|type=mRNA|length=381bp
TCCACATTGTATCTCGCGCATTTTTAGTCATCTGTACTTATGTAATGTAC
CTCCCCTCTTCCTCGTCCTCCTCCTCCTCCTCCTCTTCCTATCCCCCCCT
TTATCCTCCTTATTCCTTCGTCCCCACTTACTCCATATGCCTCTTTCTGT
TTCTCTGTCCTTGTAACGCAATTGGTCACGTTCATATTTTTTATTTCTTT
CTCCTCCTCTTCCTCCCTCCCTTACCCCCCTTACCTTTCAATACCAAGCA
TGTATGTGAGGGACTCAATGTACAATCCTTTCCTCCCTCCCTCCCTCCCT
CCCTCCCTTCCATGCTCTACACAAAGAAGTAGGAGGCCGCCATCAACACA
CGAAATTGTCCTCCCTCCCTCCCTCCCTCCC
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protein sequence of jgi.p|Nanoce1779_2|606349

>mRNA_9313-protein ID=mRNA_9313-protein|Name=jgi.p|Nanoce1779_2|606349|organism=Nannochloropsis oceanica|type=polypeptide|length=96bp
MYLPSSSSSSSSSSSYPPLYPPYSFVPTYSICLFLFLCPCNAIGHVHIFY
FFLLLFLPPLPPLPFNTKHVCEGLNVQSFPPSLPPSLPSMLYTKK*
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mRNA from alignment at scaffold_35:54247..54627+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9313 ID=mRNA_9313|Name=jgi.p|Nanoce1779_2|606349|organism=Nannochloropsis oceanica|type=mRNA|length=381bp|location=Sequence derived from alignment at scaffold_35:54247..54627+ (Nannochloropsis oceanica)
TCCACATTGTATCTCGCGCATTTTTAGTCATCTGTACTTATGTAATGTAC
CTCCCCTCTTCCTCGTCCTCCTCCTCCTCCTCCTCTTCCTATCCCCCCCT
TTATCCTCCTTATTCCTTCGTCCCCACTTACTCCATATGCCTCTTTCTGT
TTCTCTGTCCTTGTAACGCAATTGGTCACGTTCATATTTTTTATTTCTTT
CTCCTCCTCTTCCTCCCTCCCTTACCCCCCTTACCTTTCAATACCAAGCA
TGTATGTGAGGGACTCAATGTACAATCCTTTCCTCCCTCCCTCCCTCCCT
CCCTCCCTTCCATGCTCTACACAAAGAAGTAGGAGGCCGCCATCAACACA
CGAAATTGTCCTCCCTCCCTCCCTCCCTCCC
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Coding sequence (CDS) from alignment at scaffold_35:54247..54627+

>mRNA_9313 ID=mRNA_9313|Name=jgi.p|Nanoce1779_2|606349|organism=Nannochloropsis oceanica|type=CDS|length=288bp|location=Sequence derived from alignment at scaffold_35:54247..54627+ (Nannochloropsis oceanica)
ATGTACCTCCCCTCTTCCTCGTCCTCCTCCTCCTCCTCCTCTTCCTATCC
CCCCCTTTATCCTCCTTATTCCTTCGTCCCCACTTACTCCATATGCCTCT
TTCTGTTTCTCTGTCCTTGTAACGCAATTGGTCACGTTCATATTTTTTAT
TTCTTTCTCCTCCTCTTCCTCCCTCCCTTACCCCCCTTACCTTTCAATAC
CAAGCATGTATGTGAGGGACTCAATGTACAATCCTTTCCTCCCTCCCTCC
CTCCCTCCCTCCCTTCCATGCTCTACACAAAGAAGTAG
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Synonyms
Publications