jgi.p|Nanoce1779_2|560369, mRNA_9203 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|560369
Unique NamemRNA_9203
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1191
Alignment locationscaffold_36:213728..214918 +

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Properties
Property NameValue
TranscriptId560455
TrackFilteredModels2
ProteinId560369
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_36supercontigscaffold_36:213728..214918 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|560369gene_9203Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|560369mRNA_9203-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9203CDS_9203Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9203 ID=mRNA_9203|Name=jgi.p|Nanoce1779_2|560369|organism=Nannochloropsis oceanica|type=mRNA|length=1191bp
TTGAACAACGCCGATTTTGCATTCGTCCACCAATAATAATAATGACCTCG
TTCCCTAACCCACATTCAACCATTATAAATTATTTCGCCTCCACACAGAG
AGCGCAGGCGTCTCTAGACCGTCGAAGACGAGGGGCACACAGGAGACTCC
GCGACGAAACCAAATAAAGGCACCTCTTGTCAATTTGCAACCGGGCCTTG
GACTCCCTGCAAACGCCCCACGCTGCCCGCCCGCTTTTTCCACCCCACCG
GGTCACATATTTCCACCCAGCACGGCCACATCGACGCTTCTTGCTAGCTA
GTCCGGCGCAGTCCTATCCACCGAGCTAGTATCCCACCCACTGCCCTTAC
AGGAAAAATGTCCCCTCCGCCCTCCCCCTTCATCCAAGACGTGATGCTCA
CGCCCATCGTCGCCTTGACTTGTGCAGTGCTGATCCTTATTTGGTTCCCG
TTGTGGAACAATCGCATATCCCCCGACAAGGTGTGTTTTTCTTACGCTAA
GGTTGTGACTCAGGGAGAGTGGTGGCGATGCTTGACGGCGGCCCATTCGC
ACTTTGATCTGGCACATATTGGCTTTAATGTCATGTCGTTGTGGAGCTGT
CGAGTCGCAGAGCTCATGCTCGGACCATGGGTCTTCTTTGTCCAATCTCT
GGCATTGGTAATGCTCTCTAAGGGAATCATGCTGGGAGTCGTGCATGTAG
TCTCCTCTCGACTACCCGCCCCCCAAGACAGGGCATGGCAGGAGGGGGGG
TCAGTCGGGTACAGTGCGGTGATATTTGCGTGGATGACTGTATTAAGTGC
GCGTAGCACGGGAATGAGTAGTGTGTTTGGGTTGGTGGAGGTACCGTCGG
TGATGATGCCCGTTGTGAGTCTGTTCATCACTCAATTAATCGTGCGGAAC
GCCAGCTTTGTAGGGCATGCTGCCGGGATAGTGGCCGGGGGGTTGACGGC
GCTGGGGACGCTCGATTGGGCCAAGAGCGCATACTGGTGTGCAGTATTCT
TGTTCTGGATGAGCGTGATGATGGTGTACAGCTTGAAGGCGACCTCCCAA
GTCCCCATGCCCTGTATCGACTATGTCAACCGGGCCATGTCGGAGCGAGA
GGAGGGAGGGAGGGAGGGGGGAGGAAGCAGGCCTCCGCAGACGGTGGTTT
TGCACCCGGAGGGGGGAGAAAGAGGACCGACGTTGGTATGA
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protein sequence of jgi.p|Nanoce1779_2|560369

>mRNA_9203-protein ID=mRNA_9203-protein|Name=jgi.p|Nanoce1779_2|560369|organism=Nannochloropsis oceanica|type=polypeptide|length=278bp
MSPPPSPFIQDVMLTPIVALTCAVLILIWFPLWNNRISPDKVCFSYAKVV
TQGEWWRCLTAAHSHFDLAHIGFNVMSLWSCRVAELMLGPWVFFVQSLAL
VMLSKGIMLGVVHVVSSRLPAPQDRAWQEGGSVGYSAVIFAWMTVLSARS
TGMSSVFGLVEVPSVMMPVVSLFITQLIVRNASFVGHAAGIVAGGLTALG
TLDWAKSAYWCAVFLFWMSVMMVYSLKATSQVPMPCIDYVNRAMSEREEG
GREGGGSRPPQTVVLHPEGGERGPTLV*
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mRNA from alignment at scaffold_36:213728..214918+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9203 ID=mRNA_9203|Name=jgi.p|Nanoce1779_2|560369|organism=Nannochloropsis oceanica|type=mRNA|length=1191bp|location=Sequence derived from alignment at scaffold_36:213728..214918+ (Nannochloropsis oceanica)
TTGAACAACGCCGATTTTGCATTCGTCCACCAATAATAATAATGACCTCG
TTCCCTAACCCACATTCAACCATTATAAATTATTTCGCCTCCACACAGAG
AGCGCAGGCGTCTCTAGACCGTCGAAGACGAGGGGCACACAGGAGACTCC
GCGACGAAACCAAATAAAGGCACCTCTTGTCAATTTGCAACCGGGCCTTG
GACTCCCTGCAAACGCCCCACGCTGCCCGCCCGCTTTTTCCACCCCACCG
GGTCACATATTTCCACCCAGCACGGCCACATCGACGCTTCTTGCTAGCTA
GTCCGGCGCAGTCCTATCCACCGAGCTAGTATCCCACCCACTGCCCTTAC
AGGAAAAATGTCCCCTCCGCCCTCCCCCTTCATCCAAGACGTGATGCTCA
CGCCCATCGTCGCCTTGACTTGTGCAGTGCTGATCCTTATTTGGTTCCCG
TTGTGGAACAATCGCATATCCCCCGACAAGGTGTGTTTTTCTTACGCTAA
GGTTGTGACTCAGGGAGAGTGGTGGCGATGCTTGACGGCGGCCCATTCGC
ACTTTGATCTGGCACATATTGGCTTTAATGTCATGTCGTTGTGGAGCTGT
CGAGTCGCAGAGCTCATGCTCGGACCATGGGTCTTCTTTGTCCAATCTCT
GGCATTGGTAATGCTCTCTAAGGGAATCATGCTGGGAGTCGTGCATGTAG
TCTCCTCTCGACTACCCGCCCCCCAAGACAGGGCATGGCAGGAGGGGGGG
TCAGTCGGGTACAGTGCGGTGATATTTGCGTGGATGACTGTATTAAGTGC
GCGTAGCACGGGAATGAGTAGTGTGTTTGGGTTGGTGGAGGTACCGTCGG
TGATGATGCCCGTTGTGAGTCTGTTCATCACTCAATTAATCGTGCGGAAC
GCCAGCTTTGTAGGGCATGCTGCCGGGATAGTGGCCGGGGGGTTGACGGC
GCTGGGGACGCTCGATTGGGCCAAGAGCGCATACTGGTGTGCAGTATTCT
TGTTCTGGATGAGCGTGATGATGGTGTACAGCTTGAAGGCGACCTCCCAA
GTCCCCATGCCCTGTATCGACTATGTCAACCGGGCCATGTCGGAGCGAGA
GGAGGGAGGGAGGGAGGGGGGAGGAAGCAGGCCTCCGCAGACGGTGGTTT
TGCACCCGGAGGGGGGAGAAAGAGGACCGACGTTGGTATGA
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Coding sequence (CDS) from alignment at scaffold_36:213728..214918+

>mRNA_9203 ID=mRNA_9203|Name=jgi.p|Nanoce1779_2|560369|organism=Nannochloropsis oceanica|type=CDS|length=834bp|location=Sequence derived from alignment at scaffold_36:213728..214918+ (Nannochloropsis oceanica)
ATGTCCCCTCCGCCCTCCCCCTTCATCCAAGACGTGATGCTCACGCCCAT
CGTCGCCTTGACTTGTGCAGTGCTGATCCTTATTTGGTTCCCGTTGTGGA
ACAATCGCATATCCCCCGACAAGGTGTGTTTTTCTTACGCTAAGGTTGTG
ACTCAGGGAGAGTGGTGGCGATGCTTGACGGCGGCCCATTCGCACTTTGA
TCTGGCACATATTGGCTTTAATGTCATGTCGTTGTGGAGCTGTCGAGTCG
CAGAGCTCATGCTCGGACCATGGGTCTTCTTTGTCCAATCTCTGGCATTG
GTAATGCTCTCTAAGGGAATCATGCTGGGAGTCGTGCATGTAGTCTCCTC
TCGACTACCCGCCCCCCAAGACAGGGCATGGCAGGAGGGGGGGTCAGTCG
GGTACAGTGCGGTGATATTTGCGTGGATGACTGTATTAAGTGCGCGTAGC
ACGGGAATGAGTAGTGTGTTTGGGTTGGTGGAGGTACCGTCGGTGATGAT
GCCCGTTGTGAGTCTGTTCATCACTCAATTAATCGTGCGGAACGCCAGCT
TTGTAGGGCATGCTGCCGGGATAGTGGCCGGGGGGTTGACGGCGCTGGGG
ACGCTCGATTGGGCCAAGAGCGCATACTGGTGTGCAGTATTCTTGTTCTG
GATGAGCGTGATGATGGTGTACAGCTTGAAGGCGACCTCCCAAGTCCCCA
TGCCCTGTATCGACTATGTCAACCGGGCCATGTCGGAGCGAGAGGAGGGA
GGGAGGGAGGGGGGAGGAAGCAGGCCTCCGCAGACGGTGGTTTTGCACCC
GGAGGGGGGAGAAAGAGGACCGACGTTGGTATGA
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Synonyms
Publications