jgi.p|Nanoce1779_2|280610, mRNA_9694 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|280610
Unique NamemRNA_9694
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length466
Alignment locationscaffold_38:137706..138171 -

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Properties
Property NameValue
TranscriptId280696
TrackFilteredModels2
ProteinId280610
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_38supercontigscaffold_38:137706..138171 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|280610gene_9694Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|280610mRNA_9694-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9694CDS_9694Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9694 ID=mRNA_9694|Name=jgi.p|Nanoce1779_2|280610|organism=Nannochloropsis oceanica|type=mRNA|length=466bp
GTCCCACTCAACATGTACACACAGCCAACCCCCTAACCACTACTATGGTA
ATTAGACGGCCTTGTTTCTTCCTACCCCTCCTGCTGGCCGGGGCGGCCAT
CATCAGCCCCTCCTTAGCATTCTTACCCCCATCCACCCCTCCTCCCCCCG
CCTCCTCCTCCTCCTCCTTCTCCTCCACTGCCACCATCATTTCCGCCGAA
ATCCGTCGTCTCCTCCCCCTATTTCTCCCCTCGGCTGCCTTGTGTCTAGG
TGCCACCCCGCCACAGCCGTCTTACGCTTTTGGGGAAGACATCGCGGCCA
AGGTAAGGCAAATGGGAGGCGGAGGCGGGGAGGGACGAACGACGCACAGG
AGAGGACATTGAGACATTGACATCCCTGGAGCTCGCCGTCGAGTACCACC
TACGTGTGCCTATTCTCCATGTGTGTACCTACCCATCACCAGTGTTTCAC
GTCTTTTTCTTCTCTA
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protein sequence of jgi.p|Nanoce1779_2|280610

>mRNA_9694-protein ID=mRNA_9694-protein|Name=jgi.p|Nanoce1779_2|280610|organism=Nannochloropsis oceanica|type=polypeptide|length=106bp
MVIRRPCFFLPLLLAGAAIISPSLAFLPPSTPPPPASSSSSFSSTATIIS
AEIRRLLPLFLPSAALCLGATPPQPSYAFGEDIAAKVRQMGGGGGEGRTT
HRRGH*
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mRNA from alignment at scaffold_38:137706..138171-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9694 ID=mRNA_9694|Name=jgi.p|Nanoce1779_2|280610|organism=Nannochloropsis oceanica|type=mRNA|length=466bp|location=Sequence derived from alignment at scaffold_38:137706..138171- (Nannochloropsis oceanica)
GTCCCACTCAACATGTACACACAGCCAACCCCCTAACCACTACTATGGTA
ATTAGACGGCCTTGTTTCTTCCTACCCCTCCTGCTGGCCGGGGCGGCCAT
CATCAGCCCCTCCTTAGCATTCTTACCCCCATCCACCCCTCCTCCCCCCG
CCTCCTCCTCCTCCTCCTTCTCCTCCACTGCCACCATCATTTCCGCCGAA
ATCCGTCGTCTCCTCCCCCTATTTCTCCCCTCGGCTGCCTTGTGTCTAGG
TGCCACCCCGCCACAGCCGTCTTACGCTTTTGGGGAAGACATCGCGGCCA
AGGTAAGGCAAATGGGAGGCGGAGGCGGGGAGGGACGAACGACGCACAGG
AGAGGACATTGAGACATTGACATCCCTGGAGCTCGCCGTCGAGTACCACC
TACGTGTGCCTATTCTCCATGTGTGTACCTACCCATCACCAGTGTTTCAC
GTCTTTTTCTTCTCTA
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Coding sequence (CDS) from alignment at scaffold_38:137706..138171-

>mRNA_9694 ID=mRNA_9694|Name=jgi.p|Nanoce1779_2|280610|organism=Nannochloropsis oceanica|type=CDS|length=318bp|location=Sequence derived from alignment at scaffold_38:137706..138171- (Nannochloropsis oceanica)
ATGGTAATTAGACGGCCTTGTTTCTTCCTACCCCTCCTGCTGGCCGGGGC
GGCCATCATCAGCCCCTCCTTAGCATTCTTACCCCCATCCACCCCTCCTC
CCCCCGCCTCCTCCTCCTCCTCCTTCTCCTCCACTGCCACCATCATTTCC
GCCGAAATCCGTCGTCTCCTCCCCCTATTTCTCCCCTCGGCTGCCTTGTG
TCTAGGTGCCACCCCGCCACAGCCGTCTTACGCTTTTGGGGAAGACATCG
CGGCCAAGGTAAGGCAAATGGGAGGCGGAGGCGGGGAGGGACGAACGACG
CACAGGAGAGGACATTGA
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Synonyms
Publications