jgi.p|Nanoce1779_2|311136, mRNA_10142 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|311136
Unique NamemRNA_10142
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1167
Alignment locationscaffold_43:130703..131869 +

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Properties
Property NameValue
TranscriptId311222
TrackFilteredModels2
ProteinId311136
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_43supercontigscaffold_43:130703..131869 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|311136gene_10142Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|311136mRNA_10142-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10142CDS_10142Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10142 ID=mRNA_10142|Name=jgi.p|Nanoce1779_2|311136|organism=Nannochloropsis oceanica|type=mRNA|length=1167bp
GTTTTACTTTGCATCGGGGAGACCCCGGCATGGCCCACGGCCTAACAGCG
GCCATTCTCGTTGAAATTTATCCTCCTCGTCCTACTACCATTCCCTCCTC
TCCGTCGCTGTTCGGTAACTTGCCGTCCATGCACTGGTATTTGATTACCA
TGAGATTCTTCACCGTTTCTTCGTGAATTCCCTGTCTGAGCAGTCCGCAC
TGAGAGAAAGACGCACTCCGCACCAGGAGTGGAGCGAATGTGCGCTGTTA
TCCACAAGAAACGAGGGTATTGGATTTTCCTGTATCCCTTGGCCCACAAC
CCCAGGGGGGCCACGTCGTAGTCGGATCTGAAGACCATGAGCTACCTGTC
CAGCTCCAAGAAGGCAAATTCTTGTGCTCGGCCAAAGTCAACTTCGGGTC
TTGTTCACCGCCTCCCTCCCCCATAGATGTGGACACACCTTCAGCAGCAG
CTTTTTTTCTGTCCCGAGTTTGCTCAATTTCTACCGCACGTAGTTTTACA
GGCTTTTTAGCACCGACTTCCCTGCAATGGCGCAGTGCCCACTCTCTTCC
TCCTCACCACGTCCTTATTCCTTGTCTTTTCTCCATCTCCTTCCCCTTGT
CTTTCTCTTCTCCGCGCTGCGAACACAGCACAGAATTCGTCAGTATGATC
ACATTGGCTGCCATGGCGCTTATGGCATTATGAATGCCATCATGATACTT
GGGATGGTAGGACGCGATAGTGGCCAAGTGGCGCTTGGTGGGGTCGTTGT
AGGCCGCGTAGTGGAACCCGTTGATGCTTTTCTTATAAATATAATTACCG
TGACAGAAGCGTCTCTGTATCATGACCAAGAAAGCCGCGTGCATTACCCT
CACTTCTTCATGCATAACCTCCATTTCGATTGCCACGGCCTGCTCCGTCC
TCCTCCTCCGAAAGCTTGTCCGCCTTCTTCTCCTTCCTCTCCGCATCTAC
CCCCTTCTCCTCCTCCAATTCAAAATCTGAGTTTAGCACTTCATCCTTTG
TACTTGAAAACTGGAAGTGGCGCAGCGGGATGAGGTCGATCATTTCTGCT
TCTTCACTGCTCGAGCTGGAGACCTCCTCTCTAGTCACCCGGGAGGGAGA
AGAATGGCCTGCACACGCTGCCGCTGTTGCCATGGCTTTATCAGTTGTAG
TCTTTGGTATATGATTT
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protein sequence of jgi.p|Nanoce1779_2|311136

>mRNA_10142-protein ID=mRNA_10142-protein|Name=jgi.p|Nanoce1779_2|311136|organism=Nannochloropsis oceanica|type=polypeptide|length=169bp
MAQCPLSSSSPRPYSLSFLHLLPLVFLFSALRTQHRIRQYDHIGCHGAYG
IMNAIMILGMVGRDSGQVALGGVVVGRVVEPVDAFLINIITVTEASLYHD
QESRVHYPHFFMHNLHFDCHGLLRPPPPKACPPSSPSSPHLPPSPPPIQN
LSLALHPLYLKTGSGAAG*
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mRNA from alignment at scaffold_43:130703..131869+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10142 ID=mRNA_10142|Name=jgi.p|Nanoce1779_2|311136|organism=Nannochloropsis oceanica|type=mRNA|length=1167bp|location=Sequence derived from alignment at scaffold_43:130703..131869+ (Nannochloropsis oceanica)
GTTTTACTTTGCATCGGGGAGACCCCGGCATGGCCCACGGCCTAACAGCG
GCCATTCTCGTTGAAATTTATCCTCCTCGTCCTACTACCATTCCCTCCTC
TCCGTCGCTGTTCGGTAACTTGCCGTCCATGCACTGGTATTTGATTACCA
TGAGATTCTTCACCGTTTCTTCGTGAATTCCCTGTCTGAGCAGTCCGCAC
TGAGAGAAAGACGCACTCCGCACCAGGAGTGGAGCGAATGTGCGCTGTTA
TCCACAAGAAACGAGGGTATTGGATTTTCCTGTATCCCTTGGCCCACAAC
CCCAGGGGGGCCACGTCGTAGTCGGATCTGAAGACCATGAGCTACCTGTC
CAGCTCCAAGAAGGCAAATTCTTGTGCTCGGCCAAAGTCAACTTCGGGTC
TTGTTCACCGCCTCCCTCCCCCATAGATGTGGACACACCTTCAGCAGCAG
CTTTTTTTCTGTCCCGAGTTTGCTCAATTTCTACCGCACGTAGTTTTACA
GGCTTTTTAGCACCGACTTCCCTGCAATGGCGCAGTGCCCACTCTCTTCC
TCCTCACCACGTCCTTATTCCTTGTCTTTTCTCCATCTCCTTCCCCTTGT
CTTTCTCTTCTCCGCGCTGCGAACACAGCACAGAATTCGTCAGTATGATC
ACATTGGCTGCCATGGCGCTTATGGCATTATGAATGCCATCATGATACTT
GGGATGGTAGGACGCGATAGTGGCCAAGTGGCGCTTGGTGGGGTCGTTGT
AGGCCGCGTAGTGGAACCCGTTGATGCTTTTCTTATAAATATAATTACCG
TGACAGAAGCGTCTCTGTATCATGACCAAGAAAGCCGCGTGCATTACCCT
CACTTCTTCATGCATAACCTCCATTTCGATTGCCACGGCCTGCTCCGTCC
TCCTCCTCCGAAAGCTTGTCCGCCTTCTTCTCCTTCCTCTCCGCATCTAC
CCCCTTCTCCTCCTCCAATTCAAAATCTGAGTTTAGCACTTCATCCTTTG
TACTTGAAAACTGGAAGTGGCGCAGCGGGATGAGGTCGATCATTTCTGCT
TCTTCACTGCTCGAGCTGGAGACCTCCTCTCTAGTCACCCGGGAGGGAGA
AGAATGGCCTGCACACGCTGCCGCTGTTGCCATGGCTTTATCAGTTGTAG
TCTTTGGTATATGATTT
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Coding sequence (CDS) from alignment at scaffold_43:130703..131869+

>mRNA_10142 ID=mRNA_10142|Name=jgi.p|Nanoce1779_2|311136|organism=Nannochloropsis oceanica|type=CDS|length=507bp|location=Sequence derived from alignment at scaffold_43:130703..131869+ (Nannochloropsis oceanica)
ATGGCGCAGTGCCCACTCTCTTCCTCCTCACCACGTCCTTATTCCTTGTC
TTTTCTCCATCTCCTTCCCCTTGTCTTTCTCTTCTCCGCGCTGCGAACAC
AGCACAGAATTCGTCAGTATGATCACATTGGCTGCCATGGCGCTTATGGC
ATTATGAATGCCATCATGATACTTGGGATGGTAGGACGCGATAGTGGCCA
AGTGGCGCTTGGTGGGGTCGTTGTAGGCCGCGTAGTGGAACCCGTTGATG
CTTTTCTTATAAATATAATTACCGTGACAGAAGCGTCTCTGTATCATGAC
CAAGAAAGCCGCGTGCATTACCCTCACTTCTTCATGCATAACCTCCATTT
CGATTGCCACGGCCTGCTCCGTCCTCCTCCTCCGAAAGCTTGTCCGCCTT
CTTCTCCTTCCTCTCCGCATCTACCCCCTTCTCCTCCTCCAATTCAAAAT
CTGAGTTTAGCACTTCATCCTTTGTACTTGAAAACTGGAAGTGGCGCAGC
GGGATGA
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Synonyms
Publications