jgi.p|Nanoce1779_2|674518, mRNA_9889 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|674518
Unique Name	mRNA_9889
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1180
Alignment location	scaffold_45:161281..162878 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	674604
Track	FilteredModels2
ProteinId	674518

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_45	supercontig	scaffold_45:161281..162878 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|674518	gene_9889	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|674518	mRNA_9889-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9889	CDS_9889	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_45:161281..162878+
coding sequence from alignment at scaffold_45:161281..162878+

mRNA sequence

>mRNA_9889 ID=mRNA_9889|Name=jgi.p|Nanoce1779_2|674518|organism=Nannochloropsis oceanica|type=mRNA|length=1180bp
GCCATATTAATGCACATATTTAATACATCGAGCGCCACATGGATCAATAT
CTGATATGTCAAGCGCCTTATTATTCTGCATTTTAAAAAATACATAAATC
AATGTATGGTAGGTCAAGCGCCTTATGATTCTGCCATATGCCTTATGACA
TCTGGGTGGAGGCCTGGCCAAGAGACATGCCAGTAACTGCAGGAGCGAGA
GCAGCAGCCACGACAACAAGAGCAGCAGCAAGAGCAGCAGCAAGAGCAGC
AGCAGCAACAGCAAGATTGCAAGCACGAACAAGAGCTACAGCAGGAGAGC
GGAGTGTGAAGCGGGTGGAGGAGGGAGGTGGCGGAGGCCCCGAGGAGATC
CCGGAAGAGGTCCAGGCCTTTATAAATGAGGAACGGCGGCTTCTAAAGCT
GGAGGGTTCCGCCCGTCTGGACGTGAACGAGCAGACCTCAATCAAGCGCC
ATTTCATGACGCTCCCCCACGACCGCCAGGAGCGTCTCGTACCACAAGCG
ATCAACCACTTGGAGGGGGATGTTCTGGTGAAGGAGATGTGGAACGAGAC
TTTCCGGGTGGGAAGCCCACGAAATCAGCGGGTGTTTCACATCCGGATTT
CCACGGATGATGTCTCGATGTCGGTCTACTTCCACGTGGTGAAAGAGAGA
CTGAAGAAGGAGAAAGTGATTAAGGCCAAGTTGGAGAGGGAGGAGGAGGG
GGAGGAGATGCTAGAGTGACAGCAGGGGCAGGAAAACTCGCATCAGGTGG
AGAGCCTCGCATTGTTGCGATCAATCCCGGGCGCGTCAACCTGGTAACGG
CATTGGACTCGCAGACTGAAAAGATCAACACCTTGACTCGTCGTGTATTT
TACGTAAAGGGACGGATCAAAGAGTGCAACAGAAAAGTTAGGTCGTGGGA
GGTTGCACTTGGTGACATAAATGGTCCCTTTGTATCTGCCGCATGATACT
GTCAAGATCCTCGGACAGGGCGCGTAGATTTTAAGTAGAAAACTGAATAC
TGTGACGACGGACTATACGGAAAGTTGTGTGCATTTTTTGCTCTTTTCAC
TTTTTGGGGGGTTTTATCACCATTACGAGCCTTGCCACCGACCTCATGGC
ACCTACTTCTATCTTAATGTGAGCACCAAAATAAGCCCGCTCCGCATGAC
GGGGTAGCTGCCGGCATCAAAGCAATGGCA

protein sequence of jgi.p|Nanoce1779_2|674518

>mRNA_9889-protein ID=mRNA_9889-protein|Name=jgi.p|Nanoce1779_2|674518|organism=Nannochloropsis oceanica|type=polypeptide|length=194bp
MPYDIWVEAWPRDMPVTAGARAAATTTRAAARAAARAAAATARLQARTRA
TAGERSVKRVEEGGGGGPEEIPEEVQAFINEERRLLKLEGSARLDVNEQT
SIKRHFMTLPHDRQERLVPQAINHLEGDVLVKEMWNETFRVGSPRNQRVF
HIRISTDDVSMSVYFHVVKERLKKEKVIKAKLEREEEGEEMLE*

mRNA from alignment at scaffold_45:161281..162878+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9889 ID=mRNA_9889|Name=jgi.p|Nanoce1779_2|674518|organism=Nannochloropsis oceanica|type=mRNA|length=1598bp|location=Sequence derived from alignment at scaffold_45:161281..162878+ (Nannochloropsis oceanica)
GCCATATTAATGCACATATTTAATACATCGAGCGCCACATGGATCAATAT
CTGATATGTCAAGCGCCTTATTATTCTGCATTTTAAAAAATACATAAATC
AATGTATGGTAGGTCAAGCGCCTTATGATTCTGCCATATGCCTTATGACA
TCTGGGTGGAGGCCTGGCCAAGAGACATGCCAGGTAAGGAAAGGAAACGA
GATGGGTCAGCTAACAAACACGAGGGGCCACAGGGCACGTGTTTATGGGC
CAAAGGGCACATACCTTGTACTTAAAACAGTAACTGCAGGAGCGAGAGCA
GCAGCCACGACAACAAGAGCAGCAGCAAGAGCAGCAGCAAGAGCAGCAGC
AGCAACAGCAAGATTGCAAGCACGAACAAGAGCTACAGCAGGAGAGCGGA
GTGTGAAGCGGGTGGAGGAGGGAGGTGGCGGAGGCCCCGAGGAGATCCCG
GAAGAGGTCCAGGCCTTTATAAATGAGGAACGGCGGCTTCTAAAGCTGGA
GGGTTCCGCCCGTCTGGACGTGAACGAGCAGACCTCAGTGGAAGGGCTCA
TTCTTCGTACCTGTACCACACATTTTACCAGTATCTATATATAAAAAGCA
TCAGGCGATCCTGGCGGTACAACAGGAGATGGAGGATAATTCTGGGATTT
TTGCCGGGAACAGAGGGAATCCTGGCTATCGGGCATATACTATCGCTCCC
ATCTCCAGATCAAGCGCCATTTCATGACGCTCCCCCACGACCGCCAGGAG
CGTCTCGTACCACAAGCGATCAACCACTTGGAGGGGTATGTCGGCGCGAA
ATTCAAGCTCTTTATTATCTACTGAAGAATGTGGTGAGACGTAGACCGAA
ATCGATGACGAGAAATGAATGGGACTAAGCATGCCCCAATTGGTTGAGGC
GTCTGGAAGGGAGGGGGTTTCGTAGAGTTTTGCAGGGATGTTCTGGTGAA
GGAGATGTGGAACGAGACTTTCCGGGTGGGAAGCCCACGAAATCAGCGGG
TGTTTCACATCCGGATTTCCACGGATGATGTCTCGATGTCGGTCTACTTC
CACGTGGTGAAAGAGAGACTGAAGAAGGAGAAAGTGATTAAGGCCAAGTT
GGAGAGGGAGGAGGAGGGGGAGGAGATGCTAGAGTGACAGCAGGGGCAGG
AAAACTCGCATCAGGTGGAGAGCCTCGCATTGTTGCGATCAATCCCGGGC
GCGTCAACCTGGTAACGGCATTGGACTCGCAGACTGAAAAGATCAACACC
TTGACTCGTCGTGTATTTTACGTAAAGGGACGGATCAAAGAGTGCAACAG
AAAAGTTAGGTCGTGGGAGGTTGCACTTGGTGACATAAATGGTCCCTTTG
TATCTGCCGCATGATACTGTCAAGATCCTCGGACAGGGCGCGTAGATTTT
AAGTAGAAAACTGAATACTGTGACGACGGACTATACGGAAAGTTGTGTGC
ATTTTTTGCTCTTTTCACTTTTTGGGGGGTTTTATCACCATTACGAGCCT
TGCCACCGACCTCATGGCACCTACTTCTATCTTAATGTGAGCACCAAAAT
AAGCCCGCTCCGCATGACGGGGTAGCTGCCGGCATCAAAGCAATGGCA

Coding sequence (CDS) from alignment at scaffold_45:161281..162878+

>mRNA_9889 ID=mRNA_9889|Name=jgi.p|Nanoce1779_2|674518|organism=Nannochloropsis oceanica|type=CDS|length=2328bp|location=Sequence derived from alignment at scaffold_45:161281..162878+ (Nannochloropsis oceanica)
ATGCCTTATGACATCTGGGTGGAGGCCTGGCCAAGAGACATGCCAGTAAC
TGCAGGAGCGAGAGCAGCAGCCACGACAACAAGAGCAGCAGCAAGAGCAG
CAGCAAGAGCAGCAGCAGCAACAGCAAGATTGCAAGCACGAACAAGAGCT
ACAGCAGGAGAGCGGAGTGTGAAGCGGGTGGAGGAGGGAGGTGGCGGAGG
CCCCGAGGAGATCCCGGAAGAGGTCCAGGCCTTTATAAATGAGGAACGGC
GGCTTCTAAAGCTGGAGGGTTCCGCCCGTCTGGACGTGAACGAGCAGACC
TCAATCAAGCGCCATTTCATGACGCTCCCCCACGACCGCCAGGAGCGTCT
CGTACCACAAGCGATCAACCACTTGGAGGGGGATGTTCTGGTGAAGGAGA
TGTGGAACGAGACTTTCCGGGTGGGAAGCCCACGAAATCAGCGGGTGTTT
CACATCCGGATTTCCACGGATGATGTCTCGATGTCGGTCTACTTCCACGT
GGTGAAAGAGAGACTGAAGAAGGAGAAAGTGATTAAGGCCAAGTTGGAGA
GGGAGGAGGAGGGGGAGGAGATGCTAGAGTGAATGCCTTATGACATCTGG
GTGGAGGCCTGGCCAAGAGACATGCCAGTAACTGCAGGAGCGAGAGCAGC
AGCCACGACAACAAGAGCAGCAGCAAGAGCAGCAGCAAGAGCAGCAGCAG
CAACAGCAAGATTGCAAGCACGAACAAGAGCTACAGCAGGAGAGCGGAGT
GTGAAGCGGGTGGAGGAGGGAGGTGGCGGAGGCCCCGAGGAGATCCCGGA
AGAGGTCCAGGCCTTTATAAATGAGGAACGGCGGCTTCTAAAGCTGGAGG
GTTCCGCCCGTCTGGACGTGAACGAGCAGACCTCAATCAAGCGCCATTTC
ATGACGCTCCCCCACGACCGCCAGGAGCGTCTCGTACCACAAGCGATCAA
CCACTTGGAGGGGGATGTTCTGGTGAAGGAGATGTGGAACGAGACTTTCC
GGGTGGGAAGCCCACGAAATCAGCGGGTGTTTCACATCCGGATTTCCACG
GATGATGTCTCGATGTCGGTCTACTTCCACGTGGTGAAAGAGAGACTGAA
GAAGGAGAAAGTGATTAAGGCCAAGTTGGAGAGGGAGGAGGAGGGGGAGG
AGATGCTAGAGTGAATGCCTTATGACATCTGGGTGGAGGCCTGGCCAAGA
GACATGCCAGTAACTGCAGGAGCGAGAGCAGCAGCCACGACAACAAGAGC
AGCAGCAAGAGCAGCAGCAAGAGCAGCAGCAGCAACAGCAAGATTGCAAG
CACGAACAAGAGCTACAGCAGGAGAGCGGAGTGTGAAGCGGGTGGAGGAG
GGAGGTGGCGGAGGCCCCGAGGAGATCCCGGAAGAGGTCCAGGCCTTTAT
AAATGAGGAACGGCGGCTTCTAAAGCTGGAGGGTTCCGCCCGTCTGGACG
TGAACGAGCAGACCTCAATCAAGCGCCATTTCATGACGCTCCCCCACGAC
CGCCAGGAGCGTCTCGTACCACAAGCGATCAACCACTTGGAGGGGGATGT
TCTGGTGAAGGAGATGTGGAACGAGACTTTCCGGGTGGGAAGCCCACGAA
ATCAGCGGGTGTTTCACATCCGGATTTCCACGGATGATGTCTCGATGTCG
GTCTACTTCCACGTGGTGAAAGAGAGACTGAAGAAGGAGAAAGTGATTAA
GGCCAAGTTGGAGAGGGAGGAGGAGGGGGAGGAGATGCTAGAGTGAATGC
CTTATGACATCTGGGTGGAGGCCTGGCCAAGAGACATGCCAGTAACTGCA
GGAGCGAGAGCAGCAGCCACGACAACAAGAGCAGCAGCAAGAGCAGCAGC
AAGAGCAGCAGCAGCAACAGCAAGATTGCAAGCACGAACAAGAGCTACAG
CAGGAGAGCGGAGTGTGAAGCGGGTGGAGGAGGGAGGTGGCGGAGGCCCC
GAGGAGATCCCGGAAGAGGTCCAGGCCTTTATAAATGAGGAACGGCGGCT
TCTAAAGCTGGAGGGTTCCGCCCGTCTGGACGTGAACGAGCAGACCTCAA
TCAAGCGCCATTTCATGACGCTCCCCCACGACCGCCAGGAGCGTCTCGTA
CCACAAGCGATCAACCACTTGGAGGGGGATGTTCTGGTGAAGGAGATGTG
GAACGAGACTTTCCGGGTGGGAAGCCCACGAAATCAGCGGGTGTTTCACA
TCCGGATTTCCACGGATGATGTCTCGATGTCGGTCTACTTCCACGTGGTG
AAAGAGAGACTGAAGAAGGAGAAAGTGATTAAGGCCAAGTTGGAGAGGGA
GGAGGAGGGGGAGGAGATGCTAGAGTGA

Synonyms

Publications