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Properties
| Property Name | Value |
|---|
| TranscriptId | 525164 |
| Track | FilteredModels2 |
| ProteinId | 525078 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_5 | supercontig | scaffold_5:821586..823871 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2638 ID=mRNA_2638|Name=jgi.p|Nanoce1779_2|525078|organism=Nannochloropsis oceanica|type=mRNA|length=1380bp
ATGCCATCCGCGTTCCAGGGATTCATCCCTCCCTCCACCTCCTTTTCGAC
CCTCCCCCCCGCCGCGGACCAGCAACGCGAGCTGCAACAAGCCGCACAGA
CATTCAGAGAAAAAGCCTCGTCCCTCTACCTCGGCAAAAATTACGAAAAA
TCGCTCCACGAGTTTACCAACGCCCTTCTCCTCGCCCCTGACGGGTGGCC
GGAAAAACCGAAACTGTACTGTAACCGTGCTGCAGCGCTGATCATGCTCC
ATCGGTATGAAGACGCGGTCAAAGACTGCGAAAAAGCCATACAAGGAGAC
CCACACCTCCTCAAGGCCTACACTCGGTGTGGCCGGGCGTACCTCCATAT
GGGCGTCCTTGACCGTGCCTATGTCTGTTTTGATGAAGTTCGCTCCCGAG
CTGAGCAGCGCTTGAACGCCATGAGACTCAAGCTCCTCGCCCTGTGCAAA
CTCAAGCGATGGGAAGGCGGGGTCCGCTTCTGTGAGAAATACTATGCCCC
TAGCAAAGCCGAGCTGTTCCCCACCTCTCCCTCCACCACTTCCTCCACCG
GCATCTCGTCCTCATCCCCATCTCCTTTCCTCCACCCCAACCCGCACGCT
CCCATCCACGTCATCGTCCGGATGGGCTCCCTGGAGCAACGATCCTACAT
CCGCTGCTTGCGCTACACGGACCGGGAGGACGACGCCGTCGCTGCCCTCA
AAACCCTCCTGGCCCGGCACGGGCACGTCATGTGGGTCGAGAAAGAAATT
GTCCGAATTAAATCTATCAGGAACGCAAAAGAGGCCGGTGACGCGGCGTT
TCGCAAGCAAAATTTTGACCTGGCGCTCGGCCACTACGCCGAAGCCTTAA
AACTGGATCCGGAATGGGATATGATGAATGCAGTGCTACACTGCAATCGA
GGGGCTGCCCATATGGCCCTCAGGCTATTCGAACAGGCCAAGGATGATTG
CACGCATGCCTTGAGACGGAAACCTGATTATTGGAAGGCTTTCTTAAGGA
GGGCAAGGGCATGGAGGGAGATGAAGAGTAGCAGCGGCAATAGCAGCGGT
CCAGGTGCACGCTCGTCGAAGTCCTCCACGTCTGGCTGGAGTCGTAGCCG
TTCCTCGTCCTCCGTCCCTCCCTCTGGTTCCTCTTCTTCTTCATCGTCCT
CGGCGGTCGTCACGCATTATTCGGTCCTCGGGATTGCGCGGGCATCCAGC
TCGGGGGAAGTAAAGAAGGCTTTTCATCGCTTGGCGTTGAAGTTCCACCC
GGATAAAAACAAGGAGGCGGGGGCGGAGGAGATGTTTAAGAAGGTATCGG
AAGCGTACAACGTGTTGTCAGATCACAGCGCTAGAAGGTTGTATGACGCC
GAGTTAAGGGTAGGAGGGGGTGGGTTTTAG back to topprotein sequence of jgi.p|Nanoce1779_2|525078 >mRNA_2638-protein ID=mRNA_2638-protein|Name=jgi.p|Nanoce1779_2|525078|organism=Nannochloropsis oceanica|type=polypeptide|length=460bp
MPSAFQGFIPPSTSFSTLPPAADQQRELQQAAQTFREKASSLYLGKNYEK
SLHEFTNALLLAPDGWPEKPKLYCNRAAALIMLHRYEDAVKDCEKAIQGD
PHLLKAYTRCGRAYLHMGVLDRAYVCFDEVRSRAEQRLNAMRLKLLALCK
LKRWEGGVRFCEKYYAPSKAELFPTSPSTTSSTGISSSSPSPFLHPNPHA
PIHVIVRMGSLEQRSYIRCLRYTDREDDAVAALKTLLARHGHVMWVEKEI
VRIKSIRNAKEAGDAAFRKQNFDLALGHYAEALKLDPEWDMMNAVLHCNR
GAAHMALRLFEQAKDDCTHALRRKPDYWKAFLRRARAWREMKSSSGNSSG
PGARSSKSSTSGWSRSRSSSSVPPSGSSSSSSSSAVVTHYSVLGIARASS
SGEVKKAFHRLALKFHPDKNKEAGAEEMFKKVSEAYNVLSDHSARRLYDA
ELRVGGGGF* back to topmRNA from alignment at scaffold_5:821586..823871- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2638 ID=mRNA_2638|Name=jgi.p|Nanoce1779_2|525078|organism=Nannochloropsis oceanica|type=mRNA|length=2286bp|location=Sequence derived from alignment at scaffold_5:821586..823871- (Nannochloropsis oceanica)
ATGCCATCCGCGTTCCAGGGATTCATCCCTCCCTCCACCTCCTTTTCGAC
CCTCCCCCCCGCCGCGGACCAGCAACGCGAGCTGCAACAAGCCGCACAGA
CATTCAGAGAAAAAGCCTCGTCCCTCTACCTCGGCAAAAATTACGAAAAA
TCGCTCCACGAGTTTACCAACGCCCTTCTCCTCGCCCCTGACGGGTGGCC
GGAAAAACCGAAACTGTACTGTAACCGTGCTGCAGCGCTGATCATGCTCC
ATCGGTATGAAGACGCGGTCAAAGACTGCGAAAAAGCCATACAAGGAGAC
CCACACCTCCTCAAGGCCTACACTCGGTGTGGCCGGGCGTACCTCCATAT
GGGCGTCCTTGACCGTGCCTATGTCTGTTTTGATGAAGTTCGCTCCCGAG
CTGAGCAGCGCTTGGTGGCCAAATTCGGCCCTGATGCTCCTCCCATCCCT
CCTGTGGTGATGACGACTCCTGGCGGTAGCAGCAGCAGCAGTAGTAGGAG
AGAGGGGGCCTACCAGCAGAGAGCGGAGGCCTACGAGAAGAAAGGTTTGG
ACGAAGCAATCCAGGAAGCGAAAGAGGGACGGGCGGAGGTGTCAATGGTG
GAGCAGGCGCTACAAGCAGCAGAATTGCATAGCAAAAAAGTGGAGTGGGG
GGAAGCATTGGAGAGGGTAGATGCTGCTTTGCGCTTCGCCCATCGTGCCA
AGAACGCCATGAGACTCAAGCTCCTCGCCCTGTGCAAACTCAAGCGATGG
GAAGGCGGGGTCCGCTTCTGTGAGAAATACTATGCCCCTAGCAAAGCCGA
GCTGTTCCCCACCTCTCCCTCCACCACTTCCTCCACCGGCATCTCGTCCT
CATCCCCATCTCCTTTCCTCCACCCCAACCCGCACGCTCCCATCCACGTC
ATCGTCCGGATGGGCTCCCTGGAGCAACGATCCTACATCCGCTGCTTGCG
CTACACGGACCGGGAGGACGACGCCGTCGCTGCCCTCAAAACCCTCCTGG
CCCGGCACGGGCACGTCATGTGGGTCGAGAAAGAAATTGTCCGAATTAAA
TCTATCAGGAACGCAAAAGAGGCCGGTGACGCGGCGTTTCGCAAGCAAAA
TTTTGACCTGGCGCTCGGCCACTACGCCGAAGCCTTAAAACTGGATCCGG
AATGGGATATGATGAATGCAGTGCTACACTGCAATCGAGGGGCTGCCCAT
ATGGCCCTCAGGCTATTCGAACAGGCCAAGGATGATTGCACGCATGCCTT
GAGACGGAAACCTGATTATTGGAAGGCTTTCTTAAGGAGGGCAAGGGCAT
GGAGGGAGATGAAGAGGTGGGAGGAGTCGGTGGCAGATTACACGACATAT
CTGAAGCATGCCTTGCCCAAGGGCACGGCCGGGGAAGGGGAGGAAGGAAA
GGAGGGGGGAGGCGCGGGGGGGCCAACGGGGGCGACTGGGTCTGCGGCGG
ATGTGAGGAGTGAGATGGAGGGTGTGCAGAGGGAGATGAAGCTGGAGAAG
TTGGAGAAGGAACGTAGGGAGTTTGCCAAGAAGCGGCAGCAGCAGCAGCG
GCAACGGCAGCAGTCGTCGTTTGGGTGGCGTGGTGGGAGGGGAGGGGGAG
GCCCCTATCGTGGGTGGGGCCGTGGCCGTGGGAGTATCTTTGGGGAAGGG
GAGAGTGACAAAGAGGATGAAGACGATGACGATGACGATGACGATGAGGA
GGAGGATGGGGCGGGGATTTTCCAGGACTTTTTTGAGTTTTATCGAAAGC
ACAATAACAGAGAATCGGAGCGAGGAGCACGTGGAGGAGCGTCTTTTGCG
TCCAATTCAGACAGACGCACCCCTGGTGCCGCTCCTCCTGGTGCCGGCCG
ATCTTCCTCTTCCTCCTCCTCCCGCTCTGGATTCGAAGGGAGCTATCGAC
GCGGATTCAATTTTAGTGGTGCTGGTCCGGGTAGTAGCAGCGGCAATAGC
AGCGGTCCAGGTGCACGCTCGTCGAAGTCCTCCACGTCTGGCTGGAGTCG
TAGCCGTTCCTCGTCCTCCGTCCCTCCCTCTGGTTCCTCTTCTTCTTCAT
CGTCCTCGGCGGTCGTCACGCATTATTCGGTCCTCGGGATTGCGCGGGCA
TCCAGCTCGGGGGAAGTAAAGAAGGCTTTTCATCGCTTGGCGTTGAAGTT
CCACCCGGATAAAAACAAGGAGGCGGGGGCGGAGGAGATGTTTAAGAAGG
TATCGGAAGCGTACAACGTGTTGTCAGATCACAGCGCTAGAAGGTTGTAT
GACGCCGAGTTAAGGGTAGGAGGGGGTGGGTTTTAG back to topCoding sequence (CDS) from alignment at scaffold_5:821586..823871- >mRNA_2638 ID=mRNA_2638|Name=jgi.p|Nanoce1779_2|525078|organism=Nannochloropsis oceanica|type=CDS|length=4140bp|location=Sequence derived from alignment at scaffold_5:821586..823871- (Nannochloropsis oceanica)
TAGCAGCGGCAATAGCAGCGGTCCAGGTGCACGCTCGTCGAAGTCCTCCA
CGTCTGGCTGGAGTCGTAGCCGTTCCTCGTCCTCCGTCCCTCCCTCTGGT
TCCTCTTCTTCTTCATCGTCCTCGGCGGTCGTCACGCATTATTCGGTCCT
CGGGATTGCGCGGGCATCCAGCTCGGGGGAAGTAAAGAAGGCTTTTCATC
GCTTGGCGTTGAAGTTCCACCCGGATAAAAACAAGGAGGCGGGGGCGGAG
GAGATGTTTAAGAAGGTATCGGAAGCGTACAACGTGTTGTCAGATCACAG
CGCTAGAAGGTTGTATGACGCCGAGTTAAGGGTAGGAGGGGGTGGGTTTT
AGAACGCCATGAGACTCAAGCTCCTCGCCCTGTGCAAACTCAAGCGATGG
GAAGGCGGGGTCCGCTTCTGTGAGAAATACTATGCCCCTAGCAAAGCCGA
GCTGTTCCCCACCTCTCCCTCCACCACTTCCTCCACCGGCATCTCGTCCT
CATCCCCATCTCCTTTCCTCCACCCCAACCCGCACGCTCCCATCCACGTC
ATCGTCCGGATGGGCTCCCTGGAGCAACGATCCTACATCCGCTGCTTGCG
CTACACGGACCGGGAGGACGACGCCGTCGCTGCCCTCAAAACCCTCCTGG
CCCGGCACGGGCACGTCATGTGGGTCGAGAAAGAAATTGTCCGAATTAAA
TCTATCAGGAACGCAAAAGAGGCCGGTGACGCGGCGTTTCGCAAGCAAAA
TTTTGACCTGGCGCTCGGCCACTACGCCGAAGCCTTAAAACTGGATCCGG
AATGGGATATGATGAATGCAGTGCTACACTGCAATCGAGGGGCTGCCCAT
ATGGCCCTCAGGCTATTCGAACAGGCCAAGGATGATTGCACGCATGCCTT
GAGACGGAAACCTGATTATTGGAAGGCTTTCTTAAGGAGGGCAAGGGCAT
GGAGGGAGATGAAGAGATGCCATCCGCGTTCCAGGGATTCATCCCTCCCT
CCACCTCCTTTTCGACCCTCCCCCCCGCCGCGGACCAGCAACGCGAGCTG
CAACAAGCCGCACAGACATTCAGAGAAAAAGCCTCGTCCCTCTACCTCGG
CAAAAATTACGAAAAATCGCTCCACGAGTTTACCAACGCCCTTCTCCTCG
CCCCTGACGGGTGGCCGGAAAAACCGAAACTGTACTGTAACCGTGCTGCA
GCGCTGATCATGCTCCATCGGTATGAAGACGCGGTCAAAGACTGCGAAAA
AGCCATACAAGGAGACCCACACCTCCTCAAGGCCTACACTCGGTGTGGCC
GGGCGTACCTCCATATGGGCGTCCTTGACCGTGCCTATGTCTGTTTTGAT
GAAGTTCGCTCCCGAGCTGAGCAGCGCTTGTAGCAGCGGCAATAGCAGCG
GTCCAGGTGCACGCTCGTCGAAGTCCTCCACGTCTGGCTGGAGTCGTAGC
CGTTCCTCGTCCTCCGTCCCTCCCTCTGGTTCCTCTTCTTCTTCATCGTC
CTCGGCGGTCGTCACGCATTATTCGGTCCTCGGGATTGCGCGGGCATCCA
GCTCGGGGGAAGTAAAGAAGGCTTTTCATCGCTTGGCGTTGAAGTTCCAC
CCGGATAAAAACAAGGAGGCGGGGGCGGAGGAGATGTTTAAGAAGGTATC
GGAAGCGTACAACGTGTTGTCAGATCACAGCGCTAGAAGGTTGTATGACG
CCGAGTTAAGGGTAGGAGGGGGTGGGTTTTAGAACGCCATGAGACTCAAG
CTCCTCGCCCTGTGCAAACTCAAGCGATGGGAAGGCGGGGTCCGCTTCTG
TGAGAAATACTATGCCCCTAGCAAAGCCGAGCTGTTCCCCACCTCTCCCT
CCACCACTTCCTCCACCGGCATCTCGTCCTCATCCCCATCTCCTTTCCTC
CACCCCAACCCGCACGCTCCCATCCACGTCATCGTCCGGATGGGCTCCCT
GGAGCAACGATCCTACATCCGCTGCTTGCGCTACACGGACCGGGAGGACG
ACGCCGTCGCTGCCCTCAAAACCCTCCTGGCCCGGCACGGGCACGTCATG
TGGGTCGAGAAAGAAATTGTCCGAATTAAATCTATCAGGAACGCAAAAGA
GGCCGGTGACGCGGCGTTTCGCAAGCAAAATTTTGACCTGGCGCTCGGCC
ACTACGCCGAAGCCTTAAAACTGGATCCGGAATGGGATATGATGAATGCA
GTGCTACACTGCAATCGAGGGGCTGCCCATATGGCCCTCAGGCTATTCGA
ACAGGCCAAGGATGATTGCACGCATGCCTTGAGACGGAAACCTGATTATT
GGAAGGCTTTCTTAAGGAGGGCAAGGGCATGGAGGGAGATGAAGAGATGC
CATCCGCGTTCCAGGGATTCATCCCTCCCTCCACCTCCTTTTCGACCCTC
CCCCCCGCCGCGGACCAGCAACGCGAGCTGCAACAAGCCGCACAGACATT
CAGAGAAAAAGCCTCGTCCCTCTACCTCGGCAAAAATTACGAAAAATCGC
TCCACGAGTTTACCAACGCCCTTCTCCTCGCCCCTGACGGGTGGCCGGAA
AAACCGAAACTGTACTGTAACCGTGCTGCAGCGCTGATCATGCTCCATCG
GTATGAAGACGCGGTCAAAGACTGCGAAAAAGCCATACAAGGAGACCCAC
ACCTCCTCAAGGCCTACACTCGGTGTGGCCGGGCGTACCTCCATATGGGC
GTCCTTGACCGTGCCTATGTCTGTTTTGATGAAGTTCGCTCCCGAGCTGA
GCAGCGCTTGTAGCAGCGGCAATAGCAGCGGTCCAGGTGCACGCTCGTCG
AAGTCCTCCACGTCTGGCTGGAGTCGTAGCCGTTCCTCGTCCTCCGTCCC
TCCCTCTGGTTCCTCTTCTTCTTCATCGTCCTCGGCGGTCGTCACGCATT
ATTCGGTCCTCGGGATTGCGCGGGCATCCAGCTCGGGGGAAGTAAAGAAG
GCTTTTCATCGCTTGGCGTTGAAGTTCCACCCGGATAAAAACAAGGAGGC
GGGGGCGGAGGAGATGTTTAAGAAGGTATCGGAAGCGTACAACGTGTTGT
CAGATCACAGCGCTAGAAGGTTGTATGACGCCGAGTTAAGGGTAGGAGGG
GGTGGGTTTTAGAACGCCATGAGACTCAAGCTCCTCGCCCTGTGCAAACT
CAAGCGATGGGAAGGCGGGGTCCGCTTCTGTGAGAAATACTATGCCCCTA
GCAAAGCCGAGCTGTTCCCCACCTCTCCCTCCACCACTTCCTCCACCGGC
ATCTCGTCCTCATCCCCATCTCCTTTCCTCCACCCCAACCCGCACGCTCC
CATCCACGTCATCGTCCGGATGGGCTCCCTGGAGCAACGATCCTACATCC
GCTGCTTGCGCTACACGGACCGGGAGGACGACGCCGTCGCTGCCCTCAAA
ACCCTCCTGGCCCGGCACGGGCACGTCATGTGGGTCGAGAAAGAAATTGT
CCGAATTAAATCTATCAGGAACGCAAAAGAGGCCGGTGACGCGGCGTTTC
GCAAGCAAAATTTTGACCTGGCGCTCGGCCACTACGCCGAAGCCTTAAAA
CTGGATCCGGAATGGGATATGATGAATGCAGTGCTACACTGCAATCGAGG
GGCTGCCCATATGGCCCTCAGGCTATTCGAACAGGCCAAGGATGATTGCA
CGCATGCCTTGAGACGGAAACCTGATTATTGGAAGGCTTTCTTAAGGAGG
GCAAGGGCATGGAGGGAGATGAAGAGATGCCATCCGCGTTCCAGGGATTC
ATCCCTCCCTCCACCTCCTTTTCGACCCTCCCCCCCGCCGCGGACCAGCA
ACGCGAGCTGCAACAAGCCGCACAGACATTCAGAGAAAAAGCCTCGTCCC
TCTACCTCGGCAAAAATTACGAAAAATCGCTCCACGAGTTTACCAACGCC
CTTCTCCTCGCCCCTGACGGGTGGCCGGAAAAACCGAAACTGTACTGTAA
CCGTGCTGCAGCGCTGATCATGCTCCATCGGTATGAAGACGCGGTCAAAG
ACTGCGAAAAAGCCATACAAGGAGACCCACACCTCCTCAAGGCCTACACT
CGGTGTGGCCGGGCGTACCTCCATATGGGCGTCCTTGACCGTGCCTATGT
CTGTTTTGATGAAGTTCGCTCCCGAGCTGAGCAGCGCTTG back to top
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