jgi.p|Nanoce1779_2|637335, mRNA_2395 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|637335
Unique Name	mRNA_2395
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2499
Alignment location	scaffold_5:232422..234920 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	637421
Track	FilteredModels2
ProteinId	637335

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:232422..234920 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|637335	gene_2395	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|637335	mRNA_2395-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2395	CDS_2395	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:232422..234920+
coding sequence from alignment at scaffold_5:232422..234920+

mRNA sequence

>mRNA_2395 ID=mRNA_2395|Name=jgi.p|Nanoce1779_2|637335|organism=Nannochloropsis oceanica|type=mRNA|length=2499bp
ATGGACAACGATAATGCACCCTCCCGTCCCCGCACTATTGAGGAAGTGGG
CACGGCCACCCTACCATTCAGTCGAGCTGACTTTCCCCCAACGCCCGATA
CGCAATTCCCAGCCTCTGTCGACTACCTATTGACCCTCTCTGTTCTTATT
GGTGGAAAATCGTTTGAATTCACTGTGGATACAACAGCCTCAGTTAATCT
GGTGACGAGGGAGGTGGCGGATGCTCTAAATTCTGTATCTGAATCTTCTC
CAGTGGTGGCAGCAGCAGCGGCGGGGGGAAAGAAGGGATTTGGTGGTGGA
GGAGGGGGTGGAGGAGGAGGAAAGGTTAAGGGGAAGAAGGGTGACAAGAA
GAAGCAGAAGAAACAAAAGCGTAAGCAGGAGGAAGAAGAAAAAGGCGGGA
TGGGTTTGGACGAGGACGAAGAGGAATTGCTCAAGTCGGAGGAAATCGCG
TTGGACATCCTGTTACCGTCCACGCCGGGTAATGTGCATGTGTATACTCG
AGCCGTCGTCTCCGATGTCTGGGGGGGAATCGGCGCAGGGTGCTTAGGCC
TCCCCTTCTTGAGATCCTTTGGTGCGGTGGAGATTAATTTGAGGACGATG
GAAGGGAGGGTGAAGAGCCCTAAAGGAGGCCCGACGGTCTTGAAGGGAAT
AGAAGAGCTGAAGGCGAGTGAGGGAGGGAGGGAGGGAGAGAGGGAGGGAT
CGGGGGGAAGGAAGGGGTGGACGGTAGATTTTGCACCGTTGACAATCAAG
ATGGATGCAAGGATGGCGTTGGAGGCGTATCAGAAGGGAGAGACGGAGGA
GGAGGATTCCGACGAGGAGGACGGGGAGGGAGGGGGGGAGAGGGGGGGGG
AACGGCCAGAGGTGTGGATTGTGGACGTGCATTTGGACGGAAGCGTGGCG
GGTATCCCGGCAATTGTTGACCTGGGCTGTCAGAGTAGCATTTTGAACTG
GAAGGCAGCCAAGGTCCTGGGATATCGATTGGAGAAGAAGGGAGGGAGCG
AGGAAGGGAGGGAGGGGGGGGAAGAAGGCCGGGTGGTGACCCCGACGATG
GCGGGGGAGGAGGAGGGGGTGGAGGGTGCTGGGGGTATTGAGGTTTGTTT
CGCAGAGGAGACGAGGTTGAGCTTGGGGAGTGGCGCGCCCGGGAGTACCA
GCAGCAAGGAGAGTGGCAGCAGCAGTAGTTATATTGAGATTCCGAGTCGG
CGACTGGCCATCGCGGATTTGCCCGTATTTGCTTACGCCGGATTGGGCAA
CACGCCCGCGATGGTCCTAGGTCTTGATGTCCTAGGAAGTGCCGCCGACC
GCCTGATTCTCGATTGGGCGCAACGTCGGATGACGTTGGAGGGACCGTTA
CTGCCCATCAGGCGGGCTATGGCCACCTTGGAGCTACCGCTCGTGAAGTG
TGTGTCGGAAAAAGTGGTGTTGGGAACGAGGGAGACGGGAGGAGGGAAGG
AGATGGGAAGTTCGATTTTTGGGGTTCCATGGCAGTATGGCGTGCCCGCG
GTGATGGAGGAGGGAGGGGGGAAGGGAGGGAAGGAGGTGCTGTTCATGCT
CGATACTGCGGCGGGAGGAACGTTGTTGAGGAAGGAGATGTGGGAGATGT
GTGCTGCAGGGAAGGAGGGAGGGAAGGAGGGAGGGAAGGAGGACGAAATT
GTGCGGATGGCGGGGCCGGGGGCGGGTGGAGAGGTGAGGGCGAGGAAAGT
TTCCATTAATCTGTACTTGGGAGGAACGAGCGTGAGGGAGGGGCATGAGA
TGTCCATAGGTGCTGCCGTCCTGCTCGGAGGAGGAGAGGAGGGAGGAAGG
GAGGGAGGAGGGGAGTGGTCGAGCAGTGAGAGATTCGATGGGATTCTGGG
ACAGAGTTTTTTCGGGGCCTTCGAGATTGTGGACTTCGATTGGAGACATG
CCATGTTGCGGTGTTACGAGCGAGGGAAGGAGGGCGAGGCAGGGAAGGAG
GGAGGGTTGGCCTTGGAAGGGTTGTTGGATTTCTGGCCTGTGTCTTCTTC
CCCCTCCTCCACACCAGCCGGCGCAGCAAGGTTAAGGAAAGGCGTGGCAG
AGAACCTCCTCGGTTCGAATTCCCTCCTGTCCGTAACGGTCATTTTAAAC
AACCAAATCAATAAACCGGTGGTGGGACTGCTTGACACAGGCGCACAAAC
CAGCGTGCTGAATTGGGCCGCAGCCCGGGCATTGGGCATTGAGAAAGGGA
GGGGGGGGAGGGCGAAGGAGTCTCAGATCGTCGCCTTGGGGCTGGATGGG
AAGCCGGTCAAGCTTATGTACGCCAAATTTGATGAGGTGGCATTTGAGGG
AGGGAGGGATGGAGGGGGTTTGGACGTGGTGCCAAATCACACGGGGGGGA
AGAATCTGGCCATTGCAGATGTACCAGGATTGGCAAAATTGGGCTTATTG
GAGACGCCGGCCATGGTTGTAGGGTTGGATTTGTTGGAGGGAGGGAGGGG
GGGAAGACTGGTGTTTGACATGAAGGGGGGCCTGCTTTACATTGCTTAG

protein sequence of jgi.p|Nanoce1779_2|637335

>mRNA_2395-protein ID=mRNA_2395-protein|Name=jgi.p|Nanoce1779_2|637335|organism=Nannochloropsis oceanica|type=polypeptide|length=833bp
MDNDNAPSRPRTIEEVGTATLPFSRADFPPTPDTQFPASVDYLLTLSVLI
GGKSFEFTVDTTASVNLVTREVADALNSVSESSPVVAAAAAGGKKGFGGG
GGGGGGGKVKGKKGDKKKQKKQKRKQEEEEKGGMGLDEDEEELLKSEEIA
LDILLPSTPGNVHVYTRAVVSDVWGGIGAGCLGLPFLRSFGAVEINLRTM
EGRVKSPKGGPTVLKGIEELKASEGGREGEREGSGGRKGWTVDFAPLTIK
MDARMALEAYQKGETEEEDSDEEDGEGGGERGGERPEVWIVDVHLDGSVA
GIPAIVDLGCQSSILNWKAAKVLGYRLEKKGGSEEGREGGEEGRVVTPTM
AGEEEGVEGAGGIEVCFAEETRLSLGSGAPGSTSSKESGSSSSYIEIPSR
RLAIADLPVFAYAGLGNTPAMVLGLDVLGSAADRLILDWAQRRMTLEGPL
LPIRRAMATLELPLVKCVSEKVVLGTRETGGGKEMGSSIFGVPWQYGVPA
VMEEGGGKGGKEVLFMLDTAAGGTLLRKEMWEMCAAGKEGGKEGGKEDEI
VRMAGPGAGGEVRARKVSINLYLGGTSVREGHEMSIGAAVLLGGGEEGGR
EGGGEWSSSERFDGILGQSFFGAFEIVDFDWRHAMLRCYERGKEGEAGKE
GGLALEGLLDFWPVSSSPSSTPAGAARLRKGVAENLLGSNSLLSVTVILN
NQINKPVVGLLDTGAQTSVLNWAAARALGIEKGRGGRAKESQIVALGLDG
KPVKLMYAKFDEVAFEGGRDGGGLDVVPNHTGGKNLAIADVPGLAKLGLL
ETPAMVVGLDLLEGGRGGRLVFDMKGGLLYIA*

mRNA from alignment at scaffold_5:232422..234920+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2395 ID=mRNA_2395|Name=jgi.p|Nanoce1779_2|637335|organism=Nannochloropsis oceanica|type=mRNA|length=2499bp|location=Sequence derived from alignment at scaffold_5:232422..234920+ (Nannochloropsis oceanica)
ATGGACAACGATAATGCACCCTCCCGTCCCCGCACTATTGAGGAAGTGGG
CACGGCCACCCTACCATTCAGTCGAGCTGACTTTCCCCCAACGCCCGATA
CGCAATTCCCAGCCTCTGTCGACTACCTATTGACCCTCTCTGTTCTTATT
GGTGGAAAATCGTTTGAATTCACTGTGGATACAACAGCCTCAGTTAATCT
GGTGACGAGGGAGGTGGCGGATGCTCTAAATTCTGTATCTGAATCTTCTC
CAGTGGTGGCAGCAGCAGCGGCGGGGGGAAAGAAGGGATTTGGTGGTGGA
GGAGGGGGTGGAGGAGGAGGAAAGGTTAAGGGGAAGAAGGGTGACAAGAA
GAAGCAGAAGAAACAAAAGCGTAAGCAGGAGGAAGAAGAAAAAGGCGGGA
TGGGTTTGGACGAGGACGAAGAGGAATTGCTCAAGTCGGAGGAAATCGCG
TTGGACATCCTGTTACCGTCCACGCCGGGTAATGTGCATGTGTATACTCG
AGCCGTCGTCTCCGATGTCTGGGGGGGAATCGGCGCAGGGTGCTTAGGCC
TCCCCTTCTTGAGATCCTTTGGTGCGGTGGAGATTAATTTGAGGACGATG
GAAGGGAGGGTGAAGAGCCCTAAAGGAGGCCCGACGGTCTTGAAGGGAAT
AGAAGAGCTGAAGGCGAGTGAGGGAGGGAGGGAGGGAGAGAGGGAGGGAT
CGGGGGGAAGGAAGGGGTGGACGGTAGATTTTGCACCGTTGACAATCAAG
ATGGATGCAAGGATGGCGTTGGAGGCGTATCAGAAGGGAGAGACGGAGGA
GGAGGATTCCGACGAGGAGGACGGGGAGGGAGGGGGGGAGAGGGGGGGGG
AACGGCCAGAGGTGTGGATTGTGGACGTGCATTTGGACGGAAGCGTGGCG
GGTATCCCGGCAATTGTTGACCTGGGCTGTCAGAGTAGCATTTTGAACTG
GAAGGCAGCCAAGGTCCTGGGATATCGATTGGAGAAGAAGGGAGGGAGCG
AGGAAGGGAGGGAGGGGGGGGAAGAAGGCCGGGTGGTGACCCCGACGATG
GCGGGGGAGGAGGAGGGGGTGGAGGGTGCTGGGGGTATTGAGGTTTGTTT
CGCAGAGGAGACGAGGTTGAGCTTGGGGAGTGGCGCGCCCGGGAGTACCA
GCAGCAAGGAGAGTGGCAGCAGCAGTAGTTATATTGAGATTCCGAGTCGG
CGACTGGCCATCGCGGATTTGCCCGTATTTGCTTACGCCGGATTGGGCAA
CACGCCCGCGATGGTCCTAGGTCTTGATGTCCTAGGAAGTGCCGCCGACC
GCCTGATTCTCGATTGGGCGCAACGTCGGATGACGTTGGAGGGACCGTTA
CTGCCCATCAGGCGGGCTATGGCCACCTTGGAGCTACCGCTCGTGAAGTG
TGTGTCGGAAAAAGTGGTGTTGGGAACGAGGGAGACGGGAGGAGGGAAGG
AGATGGGAAGTTCGATTTTTGGGGTTCCATGGCAGTATGGCGTGCCCGCG
GTGATGGAGGAGGGAGGGGGGAAGGGAGGGAAGGAGGTGCTGTTCATGCT
CGATACTGCGGCGGGAGGAACGTTGTTGAGGAAGGAGATGTGGGAGATGT
GTGCTGCAGGGAAGGAGGGAGGGAAGGAGGGAGGGAAGGAGGACGAAATT
GTGCGGATGGCGGGGCCGGGGGCGGGTGGAGAGGTGAGGGCGAGGAAAGT
TTCCATTAATCTGTACTTGGGAGGAACGAGCGTGAGGGAGGGGCATGAGA
TGTCCATAGGTGCTGCCGTCCTGCTCGGAGGAGGAGAGGAGGGAGGAAGG
GAGGGAGGAGGGGAGTGGTCGAGCAGTGAGAGATTCGATGGGATTCTGGG
ACAGAGTTTTTTCGGGGCCTTCGAGATTGTGGACTTCGATTGGAGACATG
CCATGTTGCGGTGTTACGAGCGAGGGAAGGAGGGCGAGGCAGGGAAGGAG
GGAGGGTTGGCCTTGGAAGGGTTGTTGGATTTCTGGCCTGTGTCTTCTTC
CCCCTCCTCCACACCAGCCGGCGCAGCAAGGTTAAGGAAAGGCGTGGCAG
AGAACCTCCTCGGTTCGAATTCCCTCCTGTCCGTAACGGTCATTTTAAAC
AACCAAATCAATAAACCGGTGGTGGGACTGCTTGACACAGGCGCACAAAC
CAGCGTGCTGAATTGGGCCGCAGCCCGGGCATTGGGCATTGAGAAAGGGA
GGGGGGGGAGGGCGAAGGAGTCTCAGATCGTCGCCTTGGGGCTGGATGGG
AAGCCGGTCAAGCTTATGTACGCCAAATTTGATGAGGTGGCATTTGAGGG
AGGGAGGGATGGAGGGGGTTTGGACGTGGTGCCAAATCACACGGGGGGGA
AGAATCTGGCCATTGCAGATGTACCAGGATTGGCAAAATTGGGCTTATTG
GAGACGCCGGCCATGGTTGTAGGGTTGGATTTGTTGGAGGGAGGGAGGGG
GGGAAGACTGGTGTTTGACATGAAGGGGGGCCTGCTTTACATTGCTTAG

Coding sequence (CDS) from alignment at scaffold_5:232422..234920+

>mRNA_2395 ID=mRNA_2395|Name=jgi.p|Nanoce1779_2|637335|organism=Nannochloropsis oceanica|type=CDS|length=2499bp|location=Sequence derived from alignment at scaffold_5:232422..234920+ (Nannochloropsis oceanica)
ATGGACAACGATAATGCACCCTCCCGTCCCCGCACTATTGAGGAAGTGGG
CACGGCCACCCTACCATTCAGTCGAGCTGACTTTCCCCCAACGCCCGATA
CGCAATTCCCAGCCTCTGTCGACTACCTATTGACCCTCTCTGTTCTTATT
GGTGGAAAATCGTTTGAATTCACTGTGGATACAACAGCCTCAGTTAATCT
GGTGACGAGGGAGGTGGCGGATGCTCTAAATTCTGTATCTGAATCTTCTC
CAGTGGTGGCAGCAGCAGCGGCGGGGGGAAAGAAGGGATTTGGTGGTGGA
GGAGGGGGTGGAGGAGGAGGAAAGGTTAAGGGGAAGAAGGGTGACAAGAA
GAAGCAGAAGAAACAAAAGCGTAAGCAGGAGGAAGAAGAAAAAGGCGGGA
TGGGTTTGGACGAGGACGAAGAGGAATTGCTCAAGTCGGAGGAAATCGCG
TTGGACATCCTGTTACCGTCCACGCCGGGTAATGTGCATGTGTATACTCG
AGCCGTCGTCTCCGATGTCTGGGGGGGAATCGGCGCAGGGTGCTTAGGCC
TCCCCTTCTTGAGATCCTTTGGTGCGGTGGAGATTAATTTGAGGACGATG
GAAGGGAGGGTGAAGAGCCCTAAAGGAGGCCCGACGGTCTTGAAGGGAAT
AGAAGAGCTGAAGGCGAGTGAGGGAGGGAGGGAGGGAGAGAGGGAGGGAT
CGGGGGGAAGGAAGGGGTGGACGGTAGATTTTGCACCGTTGACAATCAAG
ATGGATGCAAGGATGGCGTTGGAGGCGTATCAGAAGGGAGAGACGGAGGA
GGAGGATTCCGACGAGGAGGACGGGGAGGGAGGGGGGGAGAGGGGGGGGG
AACGGCCAGAGGTGTGGATTGTGGACGTGCATTTGGACGGAAGCGTGGCG
GGTATCCCGGCAATTGTTGACCTGGGCTGTCAGAGTAGCATTTTGAACTG
GAAGGCAGCCAAGGTCCTGGGATATCGATTGGAGAAGAAGGGAGGGAGCG
AGGAAGGGAGGGAGGGGGGGGAAGAAGGCCGGGTGGTGACCCCGACGATG
GCGGGGGAGGAGGAGGGGGTGGAGGGTGCTGGGGGTATTGAGGTTTGTTT
CGCAGAGGAGACGAGGTTGAGCTTGGGGAGTGGCGCGCCCGGGAGTACCA
GCAGCAAGGAGAGTGGCAGCAGCAGTAGTTATATTGAGATTCCGAGTCGG
CGACTGGCCATCGCGGATTTGCCCGTATTTGCTTACGCCGGATTGGGCAA
CACGCCCGCGATGGTCCTAGGTCTTGATGTCCTAGGAAGTGCCGCCGACC
GCCTGATTCTCGATTGGGCGCAACGTCGGATGACGTTGGAGGGACCGTTA
CTGCCCATCAGGCGGGCTATGGCCACCTTGGAGCTACCGCTCGTGAAGTG
TGTGTCGGAAAAAGTGGTGTTGGGAACGAGGGAGACGGGAGGAGGGAAGG
AGATGGGAAGTTCGATTTTTGGGGTTCCATGGCAGTATGGCGTGCCCGCG
GTGATGGAGGAGGGAGGGGGGAAGGGAGGGAAGGAGGTGCTGTTCATGCT
CGATACTGCGGCGGGAGGAACGTTGTTGAGGAAGGAGATGTGGGAGATGT
GTGCTGCAGGGAAGGAGGGAGGGAAGGAGGGAGGGAAGGAGGACGAAATT
GTGCGGATGGCGGGGCCGGGGGCGGGTGGAGAGGTGAGGGCGAGGAAAGT
TTCCATTAATCTGTACTTGGGAGGAACGAGCGTGAGGGAGGGGCATGAGA
TGTCCATAGGTGCTGCCGTCCTGCTCGGAGGAGGAGAGGAGGGAGGAAGG
GAGGGAGGAGGGGAGTGGTCGAGCAGTGAGAGATTCGATGGGATTCTGGG
ACAGAGTTTTTTCGGGGCCTTCGAGATTGTGGACTTCGATTGGAGACATG
CCATGTTGCGGTGTTACGAGCGAGGGAAGGAGGGCGAGGCAGGGAAGGAG
GGAGGGTTGGCCTTGGAAGGGTTGTTGGATTTCTGGCCTGTGTCTTCTTC
CCCCTCCTCCACACCAGCCGGCGCAGCAAGGTTAAGGAAAGGCGTGGCAG
AGAACCTCCTCGGTTCGAATTCCCTCCTGTCCGTAACGGTCATTTTAAAC
AACCAAATCAATAAACCGGTGGTGGGACTGCTTGACACAGGCGCACAAAC
CAGCGTGCTGAATTGGGCCGCAGCCCGGGCATTGGGCATTGAGAAAGGGA
GGGGGGGGAGGGCGAAGGAGTCTCAGATCGTCGCCTTGGGGCTGGATGGG
AAGCCGGTCAAGCTTATGTACGCCAAATTTGATGAGGTGGCATTTGAGGG
AGGGAGGGATGGAGGGGGTTTGGACGTGGTGCCAAATCACACGGGGGGGA
AGAATCTGGCCATTGCAGATGTACCAGGATTGGCAAAATTGGGCTTATTG
GAGACGCCGGCCATGGTTGTAGGGTTGGATTTGTTGGAGGGAGGGAGGGG
GGGAAGACTGGTGTTTGACATGAAGGGGGGCCTGCTTTACATTGCTTAG

Synonyms

Publications