jgi.p|Nanoce1779_2|581816, mRNA_3341 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|581816
Unique NamemRNA_3341
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length758
Alignment locationscaffold_6:62224..63258 -

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Properties
Property NameValue
TranscriptId581902
TrackFilteredModels2
ProteinId581816
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_6supercontigscaffold_6:62224..63258 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581816gene_3341Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581816mRNA_3341-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3341CDS_3341Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3341 ID=mRNA_3341|Name=jgi.p|Nanoce1779_2|581816|organism=Nannochloropsis oceanica|type=mRNA|length=758bp
CCCTCGCCGCACTCGGCCTCGTCCTAAGTGACTGGCGAATCGACGTCTAT
GAGGCGCCTTTGCTCCGGGCCCGACGCGTGTGGATGTACCAAATCCGGGA
TGCGGCGACGGCGGGGCTGTTGGTGGTGGCTTTCCTCTTGAACGTGGCAG
GACCAGCCTTCTGCCTCGACAAGCGGTGGGCGGAGGAGAACGAGTACATC
GGTGACGATTCGTCCACCTCGAGCAATAGCGGCGGTGGCACCGCCCAGGC
CTACGTGGTGGATGCCGCCTACCTGGTTCAACTTGCCTGTGCCTTCCTCC
TTATGCTCTCCATGTTGTACAGCGGGCTACAGGTGGGAAGGGAGGGAAGG
AGGGAAAATGGGAAGGAGCGAGGGGCCGCTCACTTGAACTCAGCAGTCCC
ACCCATCTGCCCTTCTCGCCTGATCCACGCCGCTGCATCCCTCCCCTCCA
TTCTCTTTTCCCTCCGTCCCCCCATCAAAGATGAAGAAACGGCTCGTGTG
GGCCTCCCGCTCTCCCCTTCGTCAGCACGACCTCTTCCGCATCGCCCTCC
TCCAGCTTAACATCCTCCTGGCTTTCTGCATGGCAGCCTTCTGCGCCCAA
GTCATCACGCTGGCCTTCAACTACGTCCAGCTCGTGGTGTACCACCGCAC
ACTTCTGCCAGACATCTGGCTGTGGGTGGTCGGGGCCTGGTTCCCTCTCG
CCGCATGGTCCGCCTCCTGCCTCTACCTCGCCCGCAAGGCCAAGAGGGCG
TATGGAGG
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protein sequence of jgi.p|Nanoce1779_2|581816

>mRNA_3341-protein ID=mRNA_3341-protein|Name=jgi.p|Nanoce1779_2|581816|organism=Nannochloropsis oceanica|type=polypeptide|length=159bp
MYQIRDAATAGLLVVAFLLNVAGPAFCLDKRWAEENEYIGDDSSTSSNSG
GGTAQAYVVDAAYLVQLACAFLLMLSMLYSGLQVGREGRRENGKERGAAH
LNSAVPPICPSRLIHAAASLPSILFSLRPPIKDEETARVGLPLSPSSARP
LPHRPPPA*
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mRNA from alignment at scaffold_6:62224..63258-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3341 ID=mRNA_3341|Name=jgi.p|Nanoce1779_2|581816|organism=Nannochloropsis oceanica|type=mRNA|length=1035bp|location=Sequence derived from alignment at scaffold_6:62224..63258- (Nannochloropsis oceanica)
CCCTCGCCGCACTCGGCCTCGTCCTAAGTGACTGGCGAATCGACGTCTAT
GAGGCGCCTTTGCTCCGGGCCCGACGCGTGTGGATGTACCAAATCCGGGA
TGCGGCGACGGCGGGGCTGTTGGTGGTGGCTTTCCTCTTGAACGTGGCAG
GACCAGCCTTCTGCCTCGACAAGCGGTGGGCGGAGGAGAACGAGTACATC
GGTAGGTGAGAGGCGGAGGAGAAGGGAGGAGGAGAGTGAAGGAAGGAGGG
AGAAGGGGGGGGGGTCGGCACAGGAAACTCGTCGACCCGCCAAACGTCAC
TCTCACCTCCTGGCCACCCTCCCGCCTTCCCTCCCAGGTGACGATTCGTC
CACCTCGAGCAATAGCGGCGGTGGCACCGCCCAGGCCTACGTGGTGGATG
CCGCCTACCTGGTTCAACTTGCCTGTGCCTTCCTCCTTATGCTCTCCATG
TTGTACAGCGGGCTACAGGTGGGAAGGGAGGGAAGGAGGGAAAATGGGAA
GGAGCGAGGGGCCGCTCACTTGAACTCAGCAGTCCCACCCATCTGCCCTT
CTCGCCTGATCCACGCCGCTGCATCCCTCCCCTCCATTCTCTTTTCCCTC
CGTCCCCCCATCAAAGATGAAGAAACGGCTCGTGTGGGCCTCCCGCTCTC
CCCTTCGTCAGCACGACCTCTTCCGCATCGCCCTCCTCCAGCTTAACATC
CTCCTGGCTTTCTGCATGGCAGCCTTCTGCGCCCAAGTCATCACGCTGGC
CTTCAACTACGTCCAGCTCGTGGTGTACCACCGCACACTTCTGCCAGGTG
CGTCCTGGTGGTTGCCCTTCCTCCCTCCGTCCTTCCCTCCCTCCCCGCTC
TTCGTTTGGCATGCGGTCTGCCTCCTGCTTCGCTGGCTCACCCTCTCCTC
CCTCCCTCCCCCCCTCCCTCCCTCCCTCCCTCCCTAAGACATCTGGCTGT
GGGTGGTCGGGGCCTGGTTCCCTCTCGCCGCATGGTCCGCCTCCTGCCTC
TACCTCGCCCGCAAGGCCAAGAGGGCGTATGGAGG
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Coding sequence (CDS) from alignment at scaffold_6:62224..63258-

>mRNA_3341 ID=mRNA_3341|Name=jgi.p|Nanoce1779_2|581816|organism=Nannochloropsis oceanica|type=CDS|length=954bp|location=Sequence derived from alignment at scaffold_6:62224..63258- (Nannochloropsis oceanica)
GTGACGATTCGTCCACCTCGAGCAATAGCGGCGGTGGCACCGCCCAGGCC
TACGTGGTGGATGCCGCCTACCTGGTTCAACTTGCCTGTGCCTTCCTCCT
TATGCTCTCCATGTTGTACAGCGGGCTACAGGTGGGAAGGGAGGGAAGGA
GGGAAAATGGGAAGGAGCGAGGGGCCGCTCACTTGAACTCAGCAGTCCCA
CCCATCTGCCCTTCTCGCCTGATCCACGCCGCTGCATCCCTCCCCTCCAT
TCTCTTTTCCCTCCGTCCCCCCATCAAAGATGAAGAAACGGCTCGTGTGG
GCCTCCCGCTCTCCCCTTCGTCAGCACGACCTCTTCCGCATCGCCCTCCT
CCAGCTTAAATGTACCAAATCCGGGATGCGGCGACGGCGGGGCTGTTGGT
GGTGGCTTTCCTCTTGAACGTGGCAGGACCAGCCTTCTGCCTCGACAAGC
GGTGGGCGGAGGAGAACGAGTACATCGGTGACGATTCGTCCACCTCGAGC
AATAGCGGCGGTGGCACCGCCCAGGCCTACGTGGTGGATGCCGCCTACCT
GGTTCAACTTGCCTGTGCCTTCCTCCTTATGCTCTCCATGTTGTACAGCG
GGCTACAGGTGGGAAGGGAGGGAAGGAGGGAAAATGGGAAGGAGCGAGGG
GCCGCTCACTTGAACTCAGCAGTCCCACCCATCTGCCCTTCTCGCCTGAT
CCACGCCGCTGCATCCCTCCCCTCCATTCTCTTTTCCCTCCGTCCCCCCA
TCAAAGATGAAGAAACGGCTCGTGTGGGCCTCCCGCTCTCCCCTTCGTCA
GCACGACCTCTTCCGCATCGCCCTCCTCCAGCTTAAATGTACCAAATCCG
GGATGCGGCGACGGCGGGGCTGTTGGTGGTGGCTTTCCTCTTGAACGTGG
CAGGACCAGCCTTCTGCCTCGACAAGCGGTGGGCGGAGGAGAACGAGTAC
ATCG
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Synonyms
Publications