jgi.p|Nanoce1779_2|583080, mRNA_3695 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|583080
Unique Name	mRNA_3695
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1430
Alignment location	scaffold_6:996750..998179 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	583166
Track	FilteredModels2
ProteinId	583080

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:996750..998179 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|583080	gene_3695	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|583080	mRNA_3695-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3695	CDS_3695	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:996750..998179+
coding sequence from alignment at scaffold_6:996750..998179+

mRNA sequence

>mRNA_3695 ID=mRNA_3695|Name=jgi.p|Nanoce1779_2|583080|organism=Nannochloropsis oceanica|type=mRNA|length=1430bp
CCCCGTCCTCCCTCCCGCCCTCCCTACCTCCTCTCCTCACCCTCCCTTGC
GCAGTGGCTTCGTCCGCTCTTCCCACTTGCCCACCTCCACCCTCCCTTCC
TCCTCCACCACCCTCCCTCCCTGGTTCCTCCACGGCGCTGCTGTCATCGT
CGGGGAATACACGCACCTCACCTCCCTCGCCTTTCACTACGGGTTCCGCC
CGGAGGTCAATCGTCAATCAGACGACGAAGCTTGTTGCCTCCTCGTTGCC
TCCCTTCCTCCCTCCTCCGCCTTCCGTTCCACCTCCTCCTGTCTGACCAC
CATCACCGAATCCCTCCTCTCCTCTCTTGCCTCCCATGGCCCGCCCTCGG
TAGTTCCCAAGGAAGAAGTAACAATGCTCGGGCACCATTTGCAGACGATT
CTACGGCGGGGTAATCTCACCCGAGAGAGGGTGTCTCAGGAGGCTTGGAA
GAAGGAAAAGCACATCATGCGCGAGCCCGCCCTGCTGGCAATTGGACAGG
AGTGGCCCGAAAGGTTTACGATTGACGTGTTTGGAGGTAAGAGGGAGGTA
GGGGAGAGTAGCTTGCAAGCGGCAGTGAGGGAGACGAAGGAGGAAAGTGG
GGACTGTGTGTGTCTGGAGCAGGAAGAGGAGGAGGAGAGAGGGAAGGGAG
GAAGAAGATATGTGCGGATACCGGGTTTGGATTTCTGGGATGAAAGCATG
GCTTTTTGGGGTTTCCTTTGTAGAGGGGAGGGAGTGGGAGAGTGGGAGAA
GGAGGGAGGGGGGCATGGAAATTTGGCGGCAAGTGGTGGTGGAGGTGGAG
GTGGACAGACCTGGAATGGAAGAGGAGGAGGGATAGGTGGTGGTGGAGGA
GGAGGAAAAGGAGGAAGTAGTCGCTTTGGGGCGATGAGAGGAGGTCGTGG
GGTCCGAGGAGGGAGGGGAAGAAGAAGTGAGAGGGGCATGTTTGCTTCTG
TTGCCAGTGGTGATCGTGAGGAGCACCTAGGAGGAAGTAGAAGGGTGGGT
GGGGTAGAAGGACGAGGACGACAACGAGGTTGAGGAAGACGAAGAGGAGA
GCAATGTAGGGCGTATGTAGACGGAGGATGATGGTGATGAGGAGGGGGAG
GGAGGGGATCTGCGAAAGTGTCACCAGCTGAGTGGATGGAGGAGAAAGGG
CAGGACAACAGGATTCGCAGTTTATGTACATTGATGAATGCAAAAGAAGG
TAACAAGGTATAGATGTATGTGTACATCGTCTATTCATTGGTTGGCTGAT
TCTTTGATTGTGATTGGGATCCTTCTTGGTCAAGGTGGTTCTGGTTGTTG
GCTTTCTTTCCTTTATGTGTCCGTTCATGCCGGTGCTCTTGATGAAGGCA
GCTGCTGCTACGGCTAGTGATGCTGCAACGGCTGCTGCTGCTGCTGCTGC
AACGGCTGCTGCTGCTGCTGCTGCTGCTTG

protein sequence of jgi.p|Nanoce1779_2|583080

>mRNA_3695-protein ID=mRNA_3695-protein|Name=jgi.p|Nanoce1779_2|583080|organism=Nannochloropsis oceanica|type=polypeptide|length=220bp
MLGHHLQTILRRGNLTRERVSQEAWKKEKHIMREPALLAIGQEWPERFTI
DVFGGKREVGESSLQAAVRETKEESGDCVCLEQEEEEERGKGGRRYVRIP
GLDFWDESMAFWGFLCRGEGVGEWEKEGGGHGNLAASGGGGGGGQTWNGR
GGGIGGGGGGGKGGSSRFGAMRGGRGVRGGRGRRSERGMFASVASGDREE
HLGGSRRVGGVEGRGRQRG*

mRNA from alignment at scaffold_6:996750..998179+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3695 ID=mRNA_3695|Name=jgi.p|Nanoce1779_2|583080|organism=Nannochloropsis oceanica|type=mRNA|length=1430bp|location=Sequence derived from alignment at scaffold_6:996750..998179+ (Nannochloropsis oceanica)
CCCCGTCCTCCCTCCCGCCCTCCCTACCTCCTCTCCTCACCCTCCCTTGC
GCAGTGGCTTCGTCCGCTCTTCCCACTTGCCCACCTCCACCCTCCCTTCC
TCCTCCACCACCCTCCCTCCCTGGTTCCTCCACGGCGCTGCTGTCATCGT
CGGGGAATACACGCACCTCACCTCCCTCGCCTTTCACTACGGGTTCCGCC
CGGAGGTCAATCGTCAATCAGACGACGAAGCTTGTTGCCTCCTCGTTGCC
TCCCTTCCTCCCTCCTCCGCCTTCCGTTCCACCTCCTCCTGTCTGACCAC
CATCACCGAATCCCTCCTCTCCTCTCTTGCCTCCCATGGCCCGCCCTCGG
TAGTTCCCAAGGAAGAAGTAACAATGCTCGGGCACCATTTGCAGACGATT
CTACGGCGGGGTAATCTCACCCGAGAGAGGGTGTCTCAGGAGGCTTGGAA
GAAGGAAAAGCACATCATGCGCGAGCCCGCCCTGCTGGCAATTGGACAGG
AGTGGCCCGAAAGGTTTACGATTGACGTGTTTGGAGGTAAGAGGGAGGTA
GGGGAGAGTAGCTTGCAAGCGGCAGTGAGGGAGACGAAGGAGGAAAGTGG
GGACTGTGTGTGTCTGGAGCAGGAAGAGGAGGAGGAGAGAGGGAAGGGAG
GAAGAAGATATGTGCGGATACCGGGTTTGGATTTCTGGGATGAAAGCATG
GCTTTTTGGGGTTTCCTTTGTAGAGGGGAGGGAGTGGGAGAGTGGGAGAA
GGAGGGAGGGGGGCATGGAAATTTGGCGGCAAGTGGTGGTGGAGGTGGAG
GTGGACAGACCTGGAATGGAAGAGGAGGAGGGATAGGTGGTGGTGGAGGA
GGAGGAAAAGGAGGAAGTAGTCGCTTTGGGGCGATGAGAGGAGGTCGTGG
GGTCCGAGGAGGGAGGGGAAGAAGAAGTGAGAGGGGCATGTTTGCTTCTG
TTGCCAGTGGTGATCGTGAGGAGCACCTAGGAGGAAGTAGAAGGGTGGGT
GGGGTAGAAGGACGAGGACGACAACGAGGTTGAGGAAGACGAAGAGGAGA
GCAATGTAGGGCGTATGTAGACGGAGGATGATGGTGATGAGGAGGGGGAG
GGAGGGGATCTGCGAAAGTGTCACCAGCTGAGTGGATGGAGGAGAAAGGG
CAGGACAACAGGATTCGCAGTTTATGTACATTGATGAATGCAAAAGAAGG
TAACAAGGTATAGATGTATGTGTACATCGTCTATTCATTGGTTGGCTGAT
TCTTTGATTGTGATTGGGATCCTTCTTGGTCAAGGTGGTTCTGGTTGTTG
GCTTTCTTTCCTTTATGTGTCCGTTCATGCCGGTGCTCTTGATGAAGGCA
GCTGCTGCTACGGCTAGTGATGCTGCAACGGCTGCTGCTGCTGCTGCTGC
AACGGCTGCTGCTGCTGCTGCTGCTGCTTG

Coding sequence (CDS) from alignment at scaffold_6:996750..998179+

>mRNA_3695 ID=mRNA_3695|Name=jgi.p|Nanoce1779_2|583080|organism=Nannochloropsis oceanica|type=CDS|length=660bp|location=Sequence derived from alignment at scaffold_6:996750..998179+ (Nannochloropsis oceanica)
ATGCTCGGGCACCATTTGCAGACGATTCTACGGCGGGGTAATCTCACCCG
AGAGAGGGTGTCTCAGGAGGCTTGGAAGAAGGAAAAGCACATCATGCGCG
AGCCCGCCCTGCTGGCAATTGGACAGGAGTGGCCCGAAAGGTTTACGATT
GACGTGTTTGGAGGTAAGAGGGAGGTAGGGGAGAGTAGCTTGCAAGCGGC
AGTGAGGGAGACGAAGGAGGAAAGTGGGGACTGTGTGTGTCTGGAGCAGG
AAGAGGAGGAGGAGAGAGGGAAGGGAGGAAGAAGATATGTGCGGATACCG
GGTTTGGATTTCTGGGATGAAAGCATGGCTTTTTGGGGTTTCCTTTGTAG
AGGGGAGGGAGTGGGAGAGTGGGAGAAGGAGGGAGGGGGGCATGGAAATT
TGGCGGCAAGTGGTGGTGGAGGTGGAGGTGGACAGACCTGGAATGGAAGA
GGAGGAGGGATAGGTGGTGGTGGAGGAGGAGGAAAAGGAGGAAGTAGTCG
CTTTGGGGCGATGAGAGGAGGTCGTGGGGTCCGAGGAGGGAGGGGAAGAA
GAAGTGAGAGGGGCATGTTTGCTTCTGTTGCCAGTGGTGATCGTGAGGAG
CACCTAGGAGGAAGTAGAAGGGTGGGTGGGGTAGAAGGACGAGGACGACA
ACGAGGTTGA

Synonyms

Publications