jgi.p|Nanoce1779_2|584331, mRNA_3041 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|584331
Unique NamemRNA_3041
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1730
Alignment locationscaffold_7:528937..530859 -

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Properties
Property NameValue
TranscriptId584417
TrackFilteredModels2
ProteinId584331
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:528937..530859 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584331gene_3041Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584331mRNA_3041-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3041CDS_3041Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3041 ID=mRNA_3041|Name=jgi.p|Nanoce1779_2|584331|organism=Nannochloropsis oceanica|type=mRNA|length=1730bp
TCCTTTCGTGTGCGTTGTTCATGACGAGATGCACGAAATGTGAATTGATC
CAAATGATGTCTTGTTGGCCTACCGATTACGATTTCTTGGAAATGAATTA
GATAGTTTTTTTGGTTCAAAAAAGAAAAAGAAAAAAAGATGGGGTAACCC
AGCCGGCCTGTATCAAATATCGCCGTAGAACATCACAAACCTTTCCCTTC
ACAGGGAATAGGGAGTAATGGTGACGGTTTGTGCAGTCTCAGCCACTCAC
CATAATCTGACGATGCCCCTTTCTGCGTCACCACAAACCGCCCAGAATCA
GATGATGTCACGCAGAGGAGGGGTATGCCGGGTGTGAAGTGCCGTTGTAA
GAAACGTGAGAGTCGTGGGAAGATGAAGCGGAGTCGGTCATATGCTCGTC
GCTCTCAAAAGGTCGGTGGCGTCAATAGCAGCAAATCTAGCGCCCACTAC
TATCGCAACAATGTCCTGATTCCCATCTGGAGACCACTAATTCGCCTATT
CATGGCCCTCGCCCTGACATTAGCCGCTTCGAAGCTTTGCCAAACCGTAT
GCGCGGTCACGACTGCTACAAGCACCTTCATCACTCGCCCGTTGTTATCG
AGAGTGGCCTCCCTCACTTCCTCTGTTCTGTCCTCTTCCAGCTCCTCATC
CTCTCCCTGGTCCTCGCGCATCCCTCCACCAATAGCCATCCAGCCCGCGC
CCTCATCAGAATTCTTTTTCATCCTGGACGCCACAAGCCTTCTTTACCGT
TCATACTTCTCCAAGTATCAGCTCAACGACTACGATGGGAAAATCGACAA
ACCACTGCTATTACTGGGTAAGGAGTTCGCCCAGCTCGTATCCCGTCATA
ACCCAGCGTACGTAGCGGCTTGTTTCGACGGGCGCAGAGACGACGTTTTT
CGCAGGGCACTCTTCCCTGGATACAAACAAAACCGAGACGCACAACCAGC
CGAGCTTCTTGCATTGGTCCCCCGGGCAATGACATATCTGAGGGCCTTAG
GATGCGTGTCCTTTCGGTCCCCCATCCACGAAGGAGACGATCTGATGGGC
ACACTTTCGCATCTTGCCTGCACCCTGTCCCCGAATGTAACCACCATCCT
TGTGACCGAAGATAAGGACATGATGTGCCTCGTGAGCGATCAAGGAAAGA
CGTTTGTCATGCATCCACGAACTCTTCAAATATTCGATGAAGCCGCTGTC
GAAAGCAAGATGGGGGTGCCTCCCTCCCTTGTTGCTGACCTTCTCTGCTT
AGCCGGTGACCCCGTTGATGGCATCCCCGGTGTGAAAGGTGTAGGGCCAC
AAACAGCTGTGAGGCTCTTAAGAGCATTCGGCTCACTCGATAATCTATAC
GCAAATCTGGATGCCGTCGCGGCCGTGCCCAATTTAAGGGGGGCGAAGAC
CCTAGCAGAGAAATTACGCAAACAAAAAGAGGACGTGTGGATATACCGTT
CTGTTGTCGCCCTTGCTTGCGATGTAAAGCTAGAGCTTCCAATGTTGTCG
TCGCCCTCCTCCTCGTCCTGGGTGTCTTTGGAACATTTAAGGTATTTGGG
AGTTGACGAGGTGGAGGGGGAGGCGCTGATGGAGGAAGCGATGGGTGCTA
AAGGGGTGGGGAAAGGACCTTTTTTGAAGTTGTTGAAGGAACAGCAACGG
CCGTCGGTGCCATTTTGAGTCAATACAGGAAGAATTTAGAACAAACTTAG
CTTCTGTAGTACACGACTGATAAAGAGAAT
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protein sequence of jgi.p|Nanoce1779_2|584331

>mRNA_3041-protein ID=mRNA_3041-protein|Name=jgi.p|Nanoce1779_2|584331|organism=Nannochloropsis oceanica|type=polypeptide|length=448bp
MPGVKCRCKKRESRGKMKRSRSYARRSQKVGGVNSSKSSAHYYRNNVLIP
IWRPLIRLFMALALTLAASKLCQTVCAVTTATSTFITRPLLSRVASLTSS
VLSSSSSSSSPWSSRIPPPIAIQPAPSSEFFFILDATSLLYRSYFSKYQL
NDYDGKIDKPLLLLGKEFAQLVSRHNPAYVAACFDGRRDDVFRRALFPGY
KQNRDAQPAELLALVPRAMTYLRALGCVSFRSPIHEGDDLMGTLSHLACT
LSPNVTTILVTEDKDMMCLVSDQGKTFVMHPRTLQIFDEAAVESKMGVPP
SLVADLLCLAGDPVDGIPGVKGVGPQTAVRLLRAFGSLDNLYANLDAVAA
VPNLRGAKTLAEKLRKQKEDVWIYRSVVALACDVKLELPMLSSPSSSSWV
SLEHLRYLGVDEVEGEALMEEAMGAKGVGKGPFLKLLKEQQRPSVPF*
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mRNA from alignment at scaffold_7:528937..530859-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3041 ID=mRNA_3041|Name=jgi.p|Nanoce1779_2|584331|organism=Nannochloropsis oceanica|type=mRNA|length=1923bp|location=Sequence derived from alignment at scaffold_7:528937..530859- (Nannochloropsis oceanica)
TCCTTTCGTGTGCGTTGTTCATGACGAGATGCACGAAATGTGAATTGATC
CAAATGATGTCTTGTTGGCCTACCGATTACGATTTCTTGGAAATGAATTA
GATAGTTTTTTTGGTTCAAAAAAGAAAAAGAAAAAAAGATGGGGTAACCC
AGCCGGCCTGTATCAAATATCGCCGTAGAACATCACAAACCTTTCCCTTC
ACAGGGAATAGGGAGTAATGGTGACGGTTTGTGCAGTCTCAGCCACTCAC
CATAATCTGACGATGCCCCTTTCTGCGTCACCACAAACCGCCCAGAATCA
GATGATGTCACGCAGAGGAGGGGTATGCCGGGTGTGAAGTGCCGTTGTAA
GAAACGTGAGAGTCGTGGGAAGATGAAGCGGAGTCGGTCATATGCTCGTC
GCTCTCAAAAGGTCGGTGGCGTCAATAGCAGCAAATCTAGCGCCCACTAC
TATCGCAACAATGTCCTGATTCCCATCTGGAGACCACTAATTCGCCTATT
CATGGCCCTCGCCCTGACATTAGCCGCTTCGAAGCTTTGCCAAACCGTAT
GCGCGGTCACGACTGCTACAAGCACCTTCATCACTCGCCCGTTGTTATCG
AGAGTGGCCTCCCTCACTTCCTCTGTTCTGTCCTCTTCCAGCTCCTCATC
CTCTCCCTGGTCCTCGCGCATCCCTCCACCAATAGCCATCCAGCCCGCGC
CCTCATCAGAATTCTTTTTCATCCTGGACGCCACAAGCCTTCTTTACCGT
TCATACTTCTCCAAGTATCAGCTCAACGACTACGATGGGAAAATCGACAA
ACCACTGCTATTACTGGGTAGGCTGGAAGAAAGGGATAGAGGGTGAGAGG
AGTAGAAGTATAGGCCCGACTTTACATCGGTCTCCTTTTTGCTACTTGGT
TCCTTTGTTAAAACCGCAATAGAAGAAATAATATTGTGGCTCTTGATTGA
TCAGCTGACTTGAAGTCTCTGACTCGCCTTCACAATCCATCCCTCTACAT
ACTGTCCTAGGTAAGGAGTTCGCCCAGCTCGTATCCCGTCATAACCCAGC
GTACGTAGCGGCTTGTTTCGACGGGCGCAGAGACGACGTTTTTCGCAGGG
CACTCTTCCCTGGATACAAACAAAACCGAGACGCACAACCAGCCGAGCTT
CTTGCATTGGTCCCCCGGGCAATGACATATCTGAGGGCCTTAGGATGCGT
GTCCTTTCGGTCCCCCATCCACGAAGGAGACGATCTGATGGGCACACTTT
CGCATCTTGCCTGCACCCTGTCCCCGAATGTAACCACCATCCTTGTGACC
GAAGATAAGGACATGATGTGCCTCGTGAGCGATCAAGGAAAGACGTTTGT
CATGCATCCACGAACTCTTCAAATATTCGATGAAGCCGCTGTCGAAAGCA
AGATGGGGGTGCCTCCCTCCCTTGTTGCTGACCTTCTCTGCTTAGCCGGT
GACCCCGTTGATGGCATCCCCGGTGTGAAAGGTGTAGGGCCACAAACAGC
TGTGAGGCTCTTAAGAGCATTCGGCTCACTCGATAATCTATACGCAAATC
TGGATGCCGTCGCGGCCGTGCCCAATTTAAGGGGGGCGAAGACCCTAGCA
GAGAAATTACGCAAACAAAAAGAGGACGTGTGGATATACCGTTCTGTTGT
CGCCCTTGCTTGCGATGTAAAGCTAGAGCTTCCAATGTTGTCGTCGCCCT
CCTCCTCGTCCTGGGTGTCTTTGGAACATTTAAGGTATTTGGGAGTTGAC
GAGGTGGAGGGGGAGGCGCTGATGGAGGAAGCGATGGGTGCTAAAGGGGT
GGGGAAAGGACCTTTTTTGAAGTTGTTGAAGGAACAGCAACGGCCGTCGG
TGCCATTTTGAGTCAATACAGGAAGAATTTAGAACAAACTTAGCTTCTGT
AGTACACGACTGATAAAGAGAAT
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Coding sequence (CDS) from alignment at scaffold_7:528937..530859-

>mRNA_3041 ID=mRNA_3041|Name=jgi.p|Nanoce1779_2|584331|organism=Nannochloropsis oceanica|type=CDS|length=2688bp|location=Sequence derived from alignment at scaffold_7:528937..530859- (Nannochloropsis oceanica)
GTAAGGAGTTCGCCCAGCTCGTATCCCGTCATAACCCAGCGTACGTAGCG
GCTTGTTTCGACGGGCGCAGAGACGACGTTTTTCGCAGGGCACTCTTCCC
TGGATACAAACAAAACCGAGACGCACAACCAGCCGAGCTTCTTGCATTGG
TCCCCCGGGCAATGACATATCTGAGGGCCTTAGGATGCGTGTCCTTTCGG
TCCCCCATCCACGAAGGAGACGATCTGATGGGCACACTTTCGCATCTTGC
CTGCACCCTGTCCCCGAATGTAACCACCATCCTTGTGACCGAAGATAAGG
ACATGATGTGCCTCGTGAGCGATCAAGGAAAGACGTTTGTCATGCATCCA
CGAACTCTTCAAATATTCGATGAAGCCGCTGTCGAAAGCAAGATGGGGGT
GCCTCCCTCCCTTGTTGCTGACCTTCTCTGCTTAGCCGGTGACCCCGTTG
ATGGCATCCCCGGTGTGAAAGGTGTAGGGCCACAAACAGCTGTGAGGCTC
TTAAGAGCATTCGGCTCACTCGATAATCTATACGCAAATCTGGATGCCGT
CGCGGCCGTGCCCAATTTAAGGGGGGCGAAGACCCTAGCAGAGAAATTAC
GCAAACAAAAAGAGGACGTGTGGATATACCGTTCTGTTGTCGCCCTTGCT
TGCGATGTAAAGCTAGAGCTTCCAATGTTGTCGTCGCCCTCCTCCTCGTC
CTGGGTGTCTTTGGAACATTTAAGGTATTTGGGAGTTGACGAGGTGGAGG
GGGAGGCGCTGATGGAGGAAGCGATGGGTGCTAAAGGGGTGGGGAAAGGA
CCTTTTTTGAAGTTGTTGAAGGAACAGCAACGGCCGTCGGTGCCATTTTG
AATGCCGGGTGTGAAGTGCCGTTGTAAGAAACGTGAGAGTCGTGGGAAGA
TGAAGCGGAGTCGGTCATATGCTCGTCGCTCTCAAAAGGTCGGTGGCGTC
AATAGCAGCAAATCTAGCGCCCACTACTATCGCAACAATGTCCTGATTCC
CATCTGGAGACCACTAATTCGCCTATTCATGGCCCTCGCCCTGACATTAG
CCGCTTCGAAGCTTTGCCAAACCGTATGCGCGGTCACGACTGCTACAAGC
ACCTTCATCACTCGCCCGTTGTTATCGAGAGTGGCCTCCCTCACTTCCTC
TGTTCTGTCCTCTTCCAGCTCCTCATCCTCTCCCTGGTCCTCGCGCATCC
CTCCACCAATAGCCATCCAGCCCGCGCCCTCATCAGAATTCTTTTTCATC
CTGGACGCCACAAGCCTTCTTTACCGTTCATACTTCTCCAAGTATCAGCT
CAACGACTACGATGGGAAAATCGACAAACCACTGCTATTACTGGGTAAGG
AGTTCGCCCAGCTCGTATCCCGTCATAACCCAGCGTACGTAGCGGCTTGT
TTCGACGGGCGCAGAGACGACGTTTTTCGCAGGGCACTCTTCCCTGGATA
CAAACAAAACCGAGACGCACAACCAGCCGAGCTTCTTGCATTGGTCCCCC
GGGCAATGACATATCTGAGGGCCTTAGGATGCGTGTCCTTTCGGTCCCCC
ATCCACGAAGGAGACGATCTGATGGGCACACTTTCGCATCTTGCCTGCAC
CCTGTCCCCGAATGTAACCACCATCCTTGTGACCGAAGATAAGGACATGA
TGTGCCTCGTGAGCGATCAAGGAAAGACGTTTGTCATGCATCCACGAACT
CTTCAAATATTCGATGAAGCCGCTGTCGAAAGCAAGATGGGGGTGCCTCC
CTCCCTTGTTGCTGACCTTCTCTGCTTAGCCGGTGACCCCGTTGATGGCA
TCCCCGGTGTGAAAGGTGTAGGGCCACAAACAGCTGTGAGGCTCTTAAGA
GCATTCGGCTCACTCGATAATCTATACGCAAATCTGGATGCCGTCGCGGC
CGTGCCCAATTTAAGGGGGGCGAAGACCCTAGCAGAGAAATTACGCAAAC
AAAAAGAGGACGTGTGGATATACCGTTCTGTTGTCGCCCTTGCTTGCGAT
GTAAAGCTAGAGCTTCCAATGTTGTCGTCGCCCTCCTCCTCGTCCTGGGT
GTCTTTGGAACATTTAAGGTATTTGGGAGTTGACGAGGTGGAGGGGGAGG
CGCTGATGGAGGAAGCGATGGGTGCTAAAGGGGTGGGGAAAGGACCTTTT
TTGAAGTTGTTGAAGGAACAGCAACGGCCGTCGGTGCCATTTTGAATGCC
GGGTGTGAAGTGCCGTTGTAAGAAACGTGAGAGTCGTGGGAAGATGAAGC
GGAGTCGGTCATATGCTCGTCGCTCTCAAAAGGTCGGTGGCGTCAATAGC
AGCAAATCTAGCGCCCACTACTATCGCAACAATGTCCTGATTCCCATCTG
GAGACCACTAATTCGCCTATTCATGGCCCTCGCCCTGACATTAGCCGCTT
CGAAGCTTTGCCAAACCGTATGCGCGGTCACGACTGCTACAAGCACCTTC
ATCACTCGCCCGTTGTTATCGAGAGTGGCCTCCCTCACTTCCTCTGTTCT
GTCCTCTTCCAGCTCCTCATCCTCTCCCTGGTCCTCGCGCATCCCTCCAC
CAATAGCCATCCAGCCCGCGCCCTCATCAGAATTCTTTTTCATCCTGGAC
GCCACAAGCCTTCTTTACCGTTCATACTTCTCCAAGTATCAGCTCAACGA
CTACGATGGGAAAATCGACAAACCACTGCTATTACTGG
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Synonyms
Publications