jgi.p|Nanoce1779_2|584442, mRNA_3069 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|584442
Unique Name	mRNA_3069
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1801
Alignment location	scaffold_7:594159..595959 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	584528
Track	FilteredModels2
ProteinId	584442

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:594159..595959 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584442	gene_3069	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584442	mRNA_3069-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3069	CDS_3069	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:594159..595959+
coding sequence from alignment at scaffold_7:594159..595959+

mRNA sequence

>mRNA_3069 ID=mRNA_3069|Name=jgi.p|Nanoce1779_2|584442|organism=Nannochloropsis oceanica|type=mRNA|length=1801bp
CAACAGGCTCTTCGCTTCCCAAGCCCCCTGCACCGCCGTTTGCACCCAAG
AAAGCCCCGACATTCGAGGCAGAACAAACGTGTGTGTCTTTCTTCACTAT
CAAGAACACGAGTAGCCGTAGCCGGTTCAACGTCAACCAATACACGCTAC
AATGAGGCCCCCCACACTATCCAATCTGCTCTCGATGCTCTCAATCTTAT
CCCTCTGCCACGCTTTCCTGCCTCCCATGTCGGCCATGCGACCACGCTTG
ACCCGGTGCGAGTCTTCCTTGCAAAACAGGCGGTCCTCCTCCCCCTCGTC
GTCTTCCAAGGCGGCGGCGGGGAGCAAGCCCGTTCCCACGCCCCGCGTGC
AATTCGAAGGCTTTGACGAGGCATACGGACCCGCAATCGGGGATACCTTG
TCCGTCATCTACAACCCGGCCGGTCAAGGCGAGGATGCCCCCTTGTCGCT
GCTGGAAGAAGACGAGGCCGCCAGCCCATGCCTCCTATACAATTTCAATG
GGTGGGACGGGGAAGAGACGCCACTGCGGACCCCCATGTTTCCTCGGGGG
GACGGCACAATGGTGGCCACGGTGCATATTCCTAACTATGCCAAGGTTTT
GGATTGCATTGTCTCGGACGGCCAACTGGCTTTTGATACGGAGGGCGGCG
CGTACTTTCATCTTCGCATCGCTCATGTTCAAGAAGAGAAGGACGGCAAG
GTCTACAATTTCTTGCAAGGTGACGATGGTTCCTTGACCTTGACTGGAGT
GGAGGCCGCCAACGACGCCCGAGAATTAGAACGAATGATAGAAGACGAGC
TGTCTGCACGCAATGCTGGCGCAGATCGCCCGGAACTCATGCTGGGCGAG
GAGGTGGTGGATGGGACAGGCGTGGATGTTGCTAATGTGGTGGCATTCTT
GGAAGGGGAATTGGAGCAGGCGCAGGATAAATCGTCAATCACCGGGGATA
TTGAAGACTTGTTGCTGGAGACGGGGGATGCGGGAGGGGAGGCTGCAAGG
CAGTTGGCCTCGACGGGATCCATTGGTGTGCATGTCGCGGCGCTGAAGGA
CGTGGGTAATATCCCGCAGCAACTGCGGGCAGAGGCAATCGCAGTGGGGG
AGCAGCTGGGGATCAGCTCGAGTATGATTATCAATGAGCTGAGAGAGGCA
TTTGACAGTGTGACGGACGCCGAACTGTTGACCTTTGCGGAGCTGCCACA
AGCATTAAGCAAAATGGGGTTTGACCGTCTAAGCACGGAGGAGCTGGAGA
AGTTGTGCTTGACGGTTCAGGGGTTAGAGGTACCGAAGGGGGGGGGGAGG
TTGCTGAGTTTAGAGCATTTTATGAGAATTTTCTTCATTTTGGATGAGGA
GAATGTGGGGATTACGATTGTGTAGGGAGGAAGGGAACGAGGGAGGGAAG
GAGGTGTGTGAGGATCATAGGGAATGAGGGGTGTAAGGATCTTAGGTCAG
GGAAATTAGTGAAATGAAGCGGAAATGGACGGAAGAAAGAGAGGAAGAGG
CGTCTGTTGTGTAGAGGAATGGGACACCACAAGAGTAGTAGGCGCCCCAG
TCACGTGCATGCATGCAAGAGCCGGCAAAAATAGAGCACAAAGCCAAATT
AAGGGATGAATTTTGGACAAGAAGAGGAAGAAGAGGGTGATTACAAAGAT
GGAGAAAGGTCGAAAATGTAGACACCTTTTTTGTGTGATGGGTGGGCACG
GAGAGCAAAGCACAATGTCTCGACCAAGACGACGGCAAAGCTTAACCGAG
GCGCGGACGCCGCCAGCCAGGTGCACAACAACCGGGTATCTTGGACTGAT
A

protein sequence of jgi.p|Nanoce1779_2|584442

>mRNA_3069-protein ID=mRNA_3069-protein|Name=jgi.p|Nanoce1779_2|584442|organism=Nannochloropsis oceanica|type=polypeptide|length=408bp
MRPPTLSNLLSMLSILSLCHAFLPPMSAMRPRLTRCESSLQNRRSSSPSS
SSKAAAGSKPVPTPRVQFEGFDEAYGPAIGDTLSVIYNPAGQGEDAPLSL
LEEDEAASPCLLYNFNGWDGEETPLRTPMFPRGDGTMVATVHIPNYAKVL
DCIVSDGQLAFDTEGGAYFHLRIAHVQEEKDGKVYNFLQGDDGSLTLTGV
EAANDARELERMIEDELSARNAGADRPELMLGEEVVDGTGVDVANVVAFL
EGELEQAQDKSSITGDIEDLLLETGDAGGEAARQLASTGSIGVHVAALKD
VGNIPQQLRAEAIAVGEQLGISSSMIINELREAFDSVTDAELLTFAELPQ
ALSKMGFDRLSTEELEKLCLTVQGLEVPKGGGRLLSLEHFMRIFFILDEE
NVGITIV*

mRNA from alignment at scaffold_7:594159..595959+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3069 ID=mRNA_3069|Name=jgi.p|Nanoce1779_2|584442|organism=Nannochloropsis oceanica|type=mRNA|length=1801bp|location=Sequence derived from alignment at scaffold_7:594159..595959+ (Nannochloropsis oceanica)
CAACAGGCTCTTCGCTTCCCAAGCCCCCTGCACCGCCGTTTGCACCCAAG
AAAGCCCCGACATTCGAGGCAGAACAAACGTGTGTGTCTTTCTTCACTAT
CAAGAACACGAGTAGCCGTAGCCGGTTCAACGTCAACCAATACACGCTAC
AATGAGGCCCCCCACACTATCCAATCTGCTCTCGATGCTCTCAATCTTAT
CCCTCTGCCACGCTTTCCTGCCTCCCATGTCGGCCATGCGACCACGCTTG
ACCCGGTGCGAGTCTTCCTTGCAAAACAGGCGGTCCTCCTCCCCCTCGTC
GTCTTCCAAGGCGGCGGCGGGGAGCAAGCCCGTTCCCACGCCCCGCGTGC
AATTCGAAGGCTTTGACGAGGCATACGGACCCGCAATCGGGGATACCTTG
TCCGTCATCTACAACCCGGCCGGTCAAGGCGAGGATGCCCCCTTGTCGCT
GCTGGAAGAAGACGAGGCCGCCAGCCCATGCCTCCTATACAATTTCAATG
GGTGGGACGGGGAAGAGACGCCACTGCGGACCCCCATGTTTCCTCGGGGG
GACGGCACAATGGTGGCCACGGTGCATATTCCTAACTATGCCAAGGTTTT
GGATTGCATTGTCTCGGACGGCCAACTGGCTTTTGATACGGAGGGCGGCG
CGTACTTTCATCTTCGCATCGCTCATGTTCAAGAAGAGAAGGACGGCAAG
GTCTACAATTTCTTGCAAGGTGACGATGGTTCCTTGACCTTGACTGGAGT
GGAGGCCGCCAACGACGCCCGAGAATTAGAACGAATGATAGAAGACGAGC
TGTCTGCACGCAATGCTGGCGCAGATCGCCCGGAACTCATGCTGGGCGAG
GAGGTGGTGGATGGGACAGGCGTGGATGTTGCTAATGTGGTGGCATTCTT
GGAAGGGGAATTGGAGCAGGCGCAGGATAAATCGTCAATCACCGGGGATA
TTGAAGACTTGTTGCTGGAGACGGGGGATGCGGGAGGGGAGGCTGCAAGG
CAGTTGGCCTCGACGGGATCCATTGGTGTGCATGTCGCGGCGCTGAAGGA
CGTGGGTAATATCCCGCAGCAACTGCGGGCAGAGGCAATCGCAGTGGGGG
AGCAGCTGGGGATCAGCTCGAGTATGATTATCAATGAGCTGAGAGAGGCA
TTTGACAGTGTGACGGACGCCGAACTGTTGACCTTTGCGGAGCTGCCACA
AGCATTAAGCAAAATGGGGTTTGACCGTCTAAGCACGGAGGAGCTGGAGA
AGTTGTGCTTGACGGTTCAGGGGTTAGAGGTACCGAAGGGGGGGGGGAGG
TTGCTGAGTTTAGAGCATTTTATGAGAATTTTCTTCATTTTGGATGAGGA
GAATGTGGGGATTACGATTGTGTAGGGAGGAAGGGAACGAGGGAGGGAAG
GAGGTGTGTGAGGATCATAGGGAATGAGGGGTGTAAGGATCTTAGGTCAG
GGAAATTAGTGAAATGAAGCGGAAATGGACGGAAGAAAGAGAGGAAGAGG
CGTCTGTTGTGTAGAGGAATGGGACACCACAAGAGTAGTAGGCGCCCCAG
TCACGTGCATGCATGCAAGAGCCGGCAAAAATAGAGCACAAAGCCAAATT
AAGGGATGAATTTTGGACAAGAAGAGGAAGAAGAGGGTGATTACAAAGAT
GGAGAAAGGTCGAAAATGTAGACACCTTTTTTGTGTGATGGGTGGGCACG
GAGAGCAAAGCACAATGTCTCGACCAAGACGACGGCAAAGCTTAACCGAG
GCGCGGACGCCGCCAGCCAGGTGCACAACAACCGGGTATCTTGGACTGAT
A

Coding sequence (CDS) from alignment at scaffold_7:594159..595959+

>mRNA_3069 ID=mRNA_3069|Name=jgi.p|Nanoce1779_2|584442|organism=Nannochloropsis oceanica|type=CDS|length=1224bp|location=Sequence derived from alignment at scaffold_7:594159..595959+ (Nannochloropsis oceanica)
ATGAGGCCCCCCACACTATCCAATCTGCTCTCGATGCTCTCAATCTTATC
CCTCTGCCACGCTTTCCTGCCTCCCATGTCGGCCATGCGACCACGCTTGA
CCCGGTGCGAGTCTTCCTTGCAAAACAGGCGGTCCTCCTCCCCCTCGTCG
TCTTCCAAGGCGGCGGCGGGGAGCAAGCCCGTTCCCACGCCCCGCGTGCA
ATTCGAAGGCTTTGACGAGGCATACGGACCCGCAATCGGGGATACCTTGT
CCGTCATCTACAACCCGGCCGGTCAAGGCGAGGATGCCCCCTTGTCGCTG
CTGGAAGAAGACGAGGCCGCCAGCCCATGCCTCCTATACAATTTCAATGG
GTGGGACGGGGAAGAGACGCCACTGCGGACCCCCATGTTTCCTCGGGGGG
ACGGCACAATGGTGGCCACGGTGCATATTCCTAACTATGCCAAGGTTTTG
GATTGCATTGTCTCGGACGGCCAACTGGCTTTTGATACGGAGGGCGGCGC
GTACTTTCATCTTCGCATCGCTCATGTTCAAGAAGAGAAGGACGGCAAGG
TCTACAATTTCTTGCAAGGTGACGATGGTTCCTTGACCTTGACTGGAGTG
GAGGCCGCCAACGACGCCCGAGAATTAGAACGAATGATAGAAGACGAGCT
GTCTGCACGCAATGCTGGCGCAGATCGCCCGGAACTCATGCTGGGCGAGG
AGGTGGTGGATGGGACAGGCGTGGATGTTGCTAATGTGGTGGCATTCTTG
GAAGGGGAATTGGAGCAGGCGCAGGATAAATCGTCAATCACCGGGGATAT
TGAAGACTTGTTGCTGGAGACGGGGGATGCGGGAGGGGAGGCTGCAAGGC
AGTTGGCCTCGACGGGATCCATTGGTGTGCATGTCGCGGCGCTGAAGGAC
GTGGGTAATATCCCGCAGCAACTGCGGGCAGAGGCAATCGCAGTGGGGGA
GCAGCTGGGGATCAGCTCGAGTATGATTATCAATGAGCTGAGAGAGGCAT
TTGACAGTGTGACGGACGCCGAACTGTTGACCTTTGCGGAGCTGCCACAA
GCATTAAGCAAAATGGGGTTTGACCGTCTAAGCACGGAGGAGCTGGAGAA
GTTGTGCTTGACGGTTCAGGGGTTAGAGGTACCGAAGGGGGGGGGGAGGT
TGCTGAGTTTAGAGCATTTTATGAGAATTTTCTTCATTTTGGATGAGGAG
AATGTGGGGATTACGATTGTGTAG

Synonyms

Publications