jgi.p|Nanoce1779_2|519377, mRNA_4130 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|519377
Unique Name	mRNA_4130
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1320
Alignment location	scaffold_8:902942..905288 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	519463
Track	FilteredModels2
ProteinId	519377

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:902942..905288 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|519377	gene_4130	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|519377	mRNA_4130-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4130	CDS_4130	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:902942..905288+
coding sequence from alignment at scaffold_8:902942..905288+

mRNA sequence

>mRNA_4130 ID=mRNA_4130|Name=jgi.p|Nanoce1779_2|519377|organism=Nannochloropsis oceanica|type=mRNA|length=1320bp
ATGAAGATTACCACGCCACAAATCACGTGGCATGGCGGTGAGGCGGGCAA
GAATGACCCAGTATTAAGCGCGGACGTACATCCTTGTGGCGTGCTGGCGA
CGGGCGGCGCCGATGCAGAAGTGCGGCTCTGGCTTCTCCATTTGGATGAA
AACGAAGAGAGCAAATTCCAGGATTACCTGTACAATTTCGAAAACCACCA
ACGCTCGGTCAACAGTGTCCGTTTCTCCCCCAACGGCCGTGCCCTCGCCA
CGGCCAGTGATGGTGGGGTCATCTTCGTCTACCTCCTCCCCCCCGGCCGA
CCGACCCGGATCTGGCGACAGCCTAAATGCCAACGACTGGTGATCTGCCG
ATTGATTCGGACGACACAGAGCGACATATATGATATGGCCTGGGCACCTA
CCTCCGAGGAGCTGTGTTCAGTGTCCGTGGATAACAAAGTGTGTGTTTGG
GACGTGACGGGCGAGAAAAGTCCGTTGGTTAACACGTTTACCAGCCATTC
AAATTATGTGCAGGGTGTGTGCTGGGATCCCCGGGACGAGTATGTGGTAT
CTCAGAGCAACGATCGGAGCTGTCGGATGTATACGAGGAAAGCAGGCGAT
GAAATCGAGGTGGTGGGTGTCAAGAAAGGCACCAGGGCGCTCGCGGCCGC
CCCCGCTGCCGTTGCTGCAGCCGATGCTGCCACCGCTTCTGGTGGTGGTG
GTGCTGCTGCTACTGCAGCCAGCAAGACCAAGCGCGCTCCTCGTCCTAAC
CTTTTTGCCGATGAAACTGTGCCCTCTTTTTTTCGTCGTCCGGCCTGGTC
GCCAGACGGCTGCCTCCTGCTCACCCCCACCGGACTCTACCGCCGCCCTA
ATGGTCCCAGCAGCAAAACCGAATTCGCCACCCATGTCTACGTCCGTGGC
GCTTTCGCGCGCCCTGCCCTAGAGCTCCCTCACCCGGGGAACAAGGCATC
CGTCGTCGTCCGTTTCTGCCCTCAGCTCTTCGCCCTCTCCACGCGGGAAT
CCAAACACCAGCCCTCTCTCCCTCTTTCCTCCTCTTCTTCGTCTTCCGAA
GAAAAAGAACCCAACTCATCCTCCCTCCCTTCCTCCTCCTCCCTGACGGA
TCTACCGTACCGAATGGTCTTTGCTGTGCTGACGGTCAATGCCATCTTGG
TTTACGATACCCAGCATCATTTCCCTCTTGCCGTCATCAAGAACTCGCAT
TATGCGCCCTTGACGGACGCAGCGTGGGTTGCCGATGGATCGGCGTTGAT
TGCGACCAGTATGGATGGCTATGTGACGGTGGTTTGTTTCCCAGAGGGGG
AGATAGGGAAGGCGCTTGCT

protein sequence of jgi.p|Nanoce1779_2|519377

>mRNA_4130-protein ID=mRNA_4130-protein|Name=jgi.p|Nanoce1779_2|519377|organism=Nannochloropsis oceanica|type=polypeptide|length=440bp
MKITTPQITWHGGEAGKNDPVLSADVHPCGVLATGGADAEVRLWLLHLDE
NEESKFQDYLYNFENHQRSVNSVRFSPNGRALATASDGGVIFVYLLPPGR
PTRIWRQPKCQRLVICRLIRTTQSDIYDMAWAPTSEELCSVSVDNKVCVW
DVTGEKSPLVNTFTSHSNYVQGVCWDPRDEYVVSQSNDRSCRMYTRKAGD
EIEVVGVKKGTRALAAAPAAVAAADAATASGGGGAAATAASKTKRAPRPN
LFADETVPSFFRRPAWSPDGCLLLTPTGLYRRPNGPSSKTEFATHVYVRG
AFARPALELPHPGNKASVVVRFCPQLFALSTRESKHQPSLPLSSSSSSSE
EKEPNSSSLPSSSSLTDLPYRMVFAVLTVNAILVYDTQHHFPLAVIKNSH
YAPLTDAAWVADGSALIATSMDGYVTVVCFPEGEIGKALA

mRNA from alignment at scaffold_8:902942..905288+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4130 ID=mRNA_4130|Name=jgi.p|Nanoce1779_2|519377|organism=Nannochloropsis oceanica|type=mRNA|length=2347bp|location=Sequence derived from alignment at scaffold_8:902942..905288+ (Nannochloropsis oceanica)
ATGAAGATTACCACGCCACAAATCACGTGGCATGGCGGTGAGGCGGGCAA
GAATGACCCAGTATTAAGCGCGGACGTACATCCTTGTGGCGTGCTGGCGA
CGGGCGGCGCCGATGCAGAAGTGCGGGTAAGTGTCCGCGCGGAAAAGAGG
GGAAGCAAGGAGGGAAGGGGGGAGGAAGCAAAGAAAGCGATGCTGTGCGG
CCATGAACCAGAGCGGGGCACGCAATGTCGAGTGCCTTATCCATGAGCAA
CATTTTCACTTACTATTGTGACACGGGGACGCCTCCTTTCCATTTGTCTG
CGCGTGCCTGGACCTCTCTTTTTGCGGTGCGGCATCATTCTCCAACTTTG
CCAATTCCCTATTCCTCACCATGCCTTTCATGTGCCGTGGGAGTATGAAC
AGAATCTCCCACTTTGTACAACTCAGCCTCCATTCGCAGCAACAAATCTT
TTGTCAATTGCAACCGAAAAGTACTTCTCTCACCCATTCTCTCTTCCCTC
CCGCCCTTCTGTCCCCACCACAGCTCTGGCTTCTCCATTTGGATGAAAAC
GAAGAGAGCAAATTCCAGGATTACCTGTACAATTTCGAAAACCACCAACG
CTCGGTCAACAGTGTCCGTTTCTCCCCCAACGGCCGTGCCCTCGCCACGG
CCAGTGATGGTGGGGTCATCTTCGTCTACCTCCTCCCCCCCGGCCGACCG
ACCCGGATCTGGCGACAGCCTAAATGCCAACGACTGGTGATCTGCCGATT
GATTCGGACGACACAGAGCGACATATATGATATGGCCTGGGCACCTACCT
CCGAGGAGCTGTGTTCAGTGTCCGTGGATAACAAAGTGTGTGTTTGGGAC
GTGACGGGCGAGAAAAGTCCGTTGGTTAACACGTTTACCAGCCATTCAAA
TTATGTGCAGGGTGTGTGCTGGGATCCCCGGGACGAGTATGTGGTATCTC
AGAGCAACGATCGGAGCTGTCGGATGTATACGAGGAAAGCAGTGGGAGGG
GGGAAGAAGAAGAAGAATAAGAAGAAGGAGGGGGAGGGAGGGGGGGAGGA
AAAGGTGAAGAAGGTGGCGACGTCGTGGGTGGAGCATGTACAGTTAAAGT
TGGGGCACAGGGAGGGAGTGGGAGGAGAGGGGAAGGAGGAGGAGGAGGAG
GGGGAGGAGGAAGGCGAGGACGAGGGGGAGTTGTCGATGATCGTACCGGT
GATGAGCTCCACACCAGTGGCGATGGTCGTGGGAGGAGGGGGAGGGAAGG
AGGGAGGAGGGGCCGTGTTGCCCACTGCTTCCGCTGCTGTTGACGATGCG
GCAGATATGGATGGGAAGAATGAAGGGGGGGAAGGAGGGAAGGCGCAAGA
GGTGATGGTGACGAACATGCAGGACGCGGCTGATGCTGCTGCTGCGCCTG
CCGCTGCTGCGCCTGCCGCTGCTGCTTCTCCTTCCGCTGCTGAAGAGAAG
GAGCCGAAGGGAGAGGTGGGGAAGGAGGAGGAGAGTGAGAAAGAGGAGGA
AGAGGGCGATGAAATCGAGGTGGTGGGTGTCAAGAAAGGCACCAGGGCGC
TCGCGGCCGCCCCCGCTGCCGTTGCTGCAGCCGATGCTGCCACCGCTTCT
GGTGGTGGTGGTGCTGCTGCTACTGCAGCCAGCAAGACCAAGCGCGCTCC
TCGTCCTAACCTTTTTGCCGATGAAACTGTGCCCTCTTTTTTTCGTCGTC
CGGCCTGGTCGCCAGACGGCTGCCTCCTGCTCACCCCCACCGGACTCTAC
CGCCGCCCGTCCCTCCCCGATGGCTGCAGCAGCAGCAGCAGCAACAACAA
CAACAACAGCAGCAACAACAACAACAACAACAACAGCAGCAGCAACAACA
ACAAGGAGGACAAGAACAACAATAGTAATGGTCCCAGCAGCAAAACCGAA
TTCGCCACCCATGTCTACGTCCGTGGCGCTTTCGCGCGCCCTGCCCTAGA
GCTCCCTCACCCGGGGAACAAGGCATCCGTCGTCGTCCGTTTCTGCCCTC
AGCTCTTCGCCCTCTCCACGCGGGAATCCAAACACCAGCCCTCTCTCCCT
CTTTCCTCCTCTTCTTCGTCTTCCGAAGAAAAAGAACCCAACTCATCCTC
CCTCCCTTCCTCCTCCTCCCTGACGGATCTACCGTACCGAATGGTCTTTG
CTGTGCTGACGGTCAATGCCATCTTGGTTTACGATACCCAGCATCATTTC
CCTCTTGCCGTCATCAAGAACTCGCATTATGCGCCCTTGACGGACGCAGC
GTGGGTTGCCGATGGATCGGCGTTGATTGCGACCAGTATGGATGGCTATG
TGACGGTGGTTTGTTTCCCAGAGGGGGAGATAGGGAAGGCGCTTGCT

Coding sequence (CDS) from alignment at scaffold_8:902942..905288+

>mRNA_4130 ID=mRNA_4130|Name=jgi.p|Nanoce1779_2|519377|organism=Nannochloropsis oceanica|type=CDS|length=5280bp|location=Sequence derived from alignment at scaffold_8:902942..905288+ (Nannochloropsis oceanica)
ATGAAGATTACCACGCCACAAATCACGTGGCATGGCGGTGAGGCGGGCAA
GAATGACCCAGTATTAAGCGCGGACGTACATCCTTGTGGCGTGCTGGCGA
CGGGCGGCGCCGATGCAGAAGTGCGGCTCTGGCTTCTCCATTTGGATGAA
AACGAAGAGAGCAAATTCCAGGATTACCTGTACAATTTCGAAAACCACCA
ACGCTCGGTCAACAGTGTCCGTTTCTCCCCCAACGGCCGTGCCCTCGCCA
CGGCCAGTGATGGTGGGGTCATCTTCGTCTACCTCCTCCCCCCCGGCCGA
CCGACCCGGATCTGGCGACAGCCTAAATGCCAACGACTGGTGATCTGCCG
ATTGATTCGGACGACACAGAGCGACATATATGATATGGCCTGGGCACCTA
CCTCCGAGGAGCTGTGTTCAGTGTCCGTGGATAACAAAGTGTGTGTTTGG
GACGTGACGGGCGAGAAAAGTCCGTTGGTTAACACGTTTACCAGCCATTC
AAATTATGTGCAGGGTGTGTGCTGGGATCCCCGGGACGAGTATGTGGTAT
CTCAGAGCAACGATCGGAGCTGTCGGATGTATACGAGGAAAGCAGGCGAT
GAAATCGAGGTGGTGGGTGTCAAGAAAGGCACCAGGGCGCTCGCGGCCGC
CCCCGCTGCCGTTGCTGCAGCCGATGCTGCCACCGCTTCTGGTGGTGGTG
GTGCTGCTGCTACTGCAGCCAGCAAGACCAAGCGCGCTCCTCGTCCTAAC
CTTTTTGCCGATGAAACTGTGCCCTCTTTTTTTCGTCGTCCGGCCTGGTC
GCCAGACGGCTGCCTCCTGCTCACCCCCACCGGACTCTACCGCCGCCCTA
ATGGTCCCAGCAGCAAAACCGAATTCGCCACCCATGTCTACGTCCGTGGC
GCTTTCGCGCGCCCTGCCCTAGAGCTCCCTCACCCGGGGAACAAGGCATC
CGTCGTCGTCCGTTTCTGCCCTCAGCTCTTCGCCCTCTCCACGCGGGAAT
CCAAACACCAGCCCTCTCTCCCTCTTTCCTCCTCTTCTTCGTCTTCCGAA
GAAAAAGAACCCAACTCATCCTCCCTCCCTTCCTCCTCCTCCCTGACGGA
TCTACCGTACCGAATGGTCTTTGCTGTGCTGACGGTCAATGCCATCTTGG
TTTACGATACCCAGCATCATTTCCCTCTTGCCGTCATCAAGAACTCGCAT
TATGCGCCCTTGACGGACGCAGCGTGGGTTGCCGATGGATCGGCGTTGAT
TGCGACCAGTATGGATGGCTATGTGACGGTGGTTTGTTTCCCAGAGGGGG
AGATAGGGAAGGCGCTTGCTATGAAGATTACCACGCCACAAATCACGTGG
CATGGCGGTGAGGCGGGCAAGAATGACCCAGTATTAAGCGCGGACGTACA
TCCTTGTGGCGTGCTGGCGACGGGCGGCGCCGATGCAGAAGTGCGGCTCT
GGCTTCTCCATTTGGATGAAAACGAAGAGAGCAAATTCCAGGATTACCTG
TACAATTTCGAAAACCACCAACGCTCGGTCAACAGTGTCCGTTTCTCCCC
CAACGGCCGTGCCCTCGCCACGGCCAGTGATGGTGGGGTCATCTTCGTCT
ACCTCCTCCCCCCCGGCCGACCGACCCGGATCTGGCGACAGCCTAAATGC
CAACGACTGGTGATCTGCCGATTGATTCGGACGACACAGAGCGACATATA
TGATATGGCCTGGGCACCTACCTCCGAGGAGCTGTGTTCAGTGTCCGTGG
ATAACAAAGTGTGTGTTTGGGACGTGACGGGCGAGAAAAGTCCGTTGGTT
AACACGTTTACCAGCCATTCAAATTATGTGCAGGGTGTGTGCTGGGATCC
CCGGGACGAGTATGTGGTATCTCAGAGCAACGATCGGAGCTGTCGGATGT
ATACGAGGAAAGCAGGCGATGAAATCGAGGTGGTGGGTGTCAAGAAAGGC
ACCAGGGCGCTCGCGGCCGCCCCCGCTGCCGTTGCTGCAGCCGATGCTGC
CACCGCTTCTGGTGGTGGTGGTGCTGCTGCTACTGCAGCCAGCAAGACCA
AGCGCGCTCCTCGTCCTAACCTTTTTGCCGATGAAACTGTGCCCTCTTTT
TTTCGTCGTCCGGCCTGGTCGCCAGACGGCTGCCTCCTGCTCACCCCCAC
CGGACTCTACCGCCGCCCTAATGGTCCCAGCAGCAAAACCGAATTCGCCA
CCCATGTCTACGTCCGTGGCGCTTTCGCGCGCCCTGCCCTAGAGCTCCCT
CACCCGGGGAACAAGGCATCCGTCGTCGTCCGTTTCTGCCCTCAGCTCTT
CGCCCTCTCCACGCGGGAATCCAAACACCAGCCCTCTCTCCCTCTTTCCT
CCTCTTCTTCGTCTTCCGAAGAAAAAGAACCCAACTCATCCTCCCTCCCT
TCCTCCTCCTCCCTGACGGATCTACCGTACCGAATGGTCTTTGCTGTGCT
GACGGTCAATGCCATCTTGGTTTACGATACCCAGCATCATTTCCCTCTTG
CCGTCATCAAGAACTCGCATTATGCGCCCTTGACGGACGCAGCGTGGGTT
GCCGATGGATCGGCGTTGATTGCGACCAGTATGGATGGCTATGTGACGGT
GGTTTGTTTCCCAGAGGGGGAGATAGGGAAGGCGCTTGCTATGAAGATTA
CCACGCCACAAATCACGTGGCATGGCGGTGAGGCGGGCAAGAATGACCCA
GTATTAAGCGCGGACGTACATCCTTGTGGCGTGCTGGCGACGGGCGGCGC
CGATGCAGAAGTGCGGCTCTGGCTTCTCCATTTGGATGAAAACGAAGAGA
GCAAATTCCAGGATTACCTGTACAATTTCGAAAACCACCAACGCTCGGTC
AACAGTGTCCGTTTCTCCCCCAACGGCCGTGCCCTCGCCACGGCCAGTGA
TGGTGGGGTCATCTTCGTCTACCTCCTCCCCCCCGGCCGACCGACCCGGA
TCTGGCGACAGCCTAAATGCCAACGACTGGTGATCTGCCGATTGATTCGG
ACGACACAGAGCGACATATATGATATGGCCTGGGCACCTACCTCCGAGGA
GCTGTGTTCAGTGTCCGTGGATAACAAAGTGTGTGTTTGGGACGTGACGG
GCGAGAAAAGTCCGTTGGTTAACACGTTTACCAGCCATTCAAATTATGTG
CAGGGTGTGTGCTGGGATCCCCGGGACGAGTATGTGGTATCTCAGAGCAA
CGATCGGAGCTGTCGGATGTATACGAGGAAAGCAGGCGATGAAATCGAGG
TGGTGGGTGTCAAGAAAGGCACCAGGGCGCTCGCGGCCGCCCCCGCTGCC
GTTGCTGCAGCCGATGCTGCCACCGCTTCTGGTGGTGGTGGTGCTGCTGC
TACTGCAGCCAGCAAGACCAAGCGCGCTCCTCGTCCTAACCTTTTTGCCG
ATGAAACTGTGCCCTCTTTTTTTCGTCGTCCGGCCTGGTCGCCAGACGGC
TGCCTCCTGCTCACCCCCACCGGACTCTACCGCCGCCCTAATGGTCCCAG
CAGCAAAACCGAATTCGCCACCCATGTCTACGTCCGTGGCGCTTTCGCGC
GCCCTGCCCTAGAGCTCCCTCACCCGGGGAACAAGGCATCCGTCGTCGTC
CGTTTCTGCCCTCAGCTCTTCGCCCTCTCCACGCGGGAATCCAAACACCA
GCCCTCTCTCCCTCTTTCCTCCTCTTCTTCGTCTTCCGAAGAAAAAGAAC
CCAACTCATCCTCCCTCCCTTCCTCCTCCTCCCTGACGGATCTACCGTAC
CGAATGGTCTTTGCTGTGCTGACGGTCAATGCCATCTTGGTTTACGATAC
CCAGCATCATTTCCCTCTTGCCGTCATCAAGAACTCGCATTATGCGCCCT
TGACGGACGCAGCGTGGGTTGCCGATGGATCGGCGTTGATTGCGACCAGT
ATGGATGGCTATGTGACGGTGGTTTGTTTCCCAGAGGGGGAGATAGGGAA
GGCGCTTGCTATGAAGATTACCACGCCACAAATCACGTGGCATGGCGGTG
AGGCGGGCAAGAATGACCCAGTATTAAGCGCGGACGTACATCCTTGTGGC
GTGCTGGCGACGGGCGGCGCCGATGCAGAAGTGCGGCTCTGGCTTCTCCA
TTTGGATGAAAACGAAGAGAGCAAATTCCAGGATTACCTGTACAATTTCG
AAAACCACCAACGCTCGGTCAACAGTGTCCGTTTCTCCCCCAACGGCCGT
GCCCTCGCCACGGCCAGTGATGGTGGGGTCATCTTCGTCTACCTCCTCCC
CCCCGGCCGACCGACCCGGATCTGGCGACAGCCTAAATGCCAACGACTGG
TGATCTGCCGATTGATTCGGACGACACAGAGCGACATATATGATATGGCC
TGGGCACCTACCTCCGAGGAGCTGTGTTCAGTGTCCGTGGATAACAAAGT
GTGTGTTTGGGACGTGACGGGCGAGAAAAGTCCGTTGGTTAACACGTTTA
CCAGCCATTCAAATTATGTGCAGGGTGTGTGCTGGGATCCCCGGGACGAG
TATGTGGTATCTCAGAGCAACGATCGGAGCTGTCGGATGTATACGAGGAA
AGCAGGCGATGAAATCGAGGTGGTGGGTGTCAAGAAAGGCACCAGGGCGC
TCGCGGCCGCCCCCGCTGCCGTTGCTGCAGCCGATGCTGCCACCGCTTCT
GGTGGTGGTGGTGCTGCTGCTACTGCAGCCAGCAAGACCAAGCGCGCTCC
TCGTCCTAACCTTTTTGCCGATGAAACTGTGCCCTCTTTTTTTCGTCGTC
CGGCCTGGTCGCCAGACGGCTGCCTCCTGCTCACCCCCACCGGACTCTAC
CGCCGCCCTAATGGTCCCAGCAGCAAAACCGAATTCGCCACCCATGTCTA
CGTCCGTGGCGCTTTCGCGCGCCCTGCCCTAGAGCTCCCTCACCCGGGGA
ACAAGGCATCCGTCGTCGTCCGTTTCTGCCCTCAGCTCTTCGCCCTCTCC
ACGCGGGAATCCAAACACCAGCCCTCTCTCCCTCTTTCCTCCTCTTCTTC
GTCTTCCGAAGAAAAAGAACCCAACTCATCCTCCCTCCCTTCCTCCTCCT
CCCTGACGGATCTACCGTACCGAATGGTCTTTGCTGTGCTGACGGTCAAT
GCCATCTTGGTTTACGATACCCAGCATCATTTCCCTCTTGCCGTCATCAA
GAACTCGCATTATGCGCCCTTGACGGACGCAGCGTGGGTTGCCGATGGAT
CGGCGTTGATTGCGACCAGTATGGATGGCTATGTGACGGTGGTTTGTTTC
CCAGAGGGGGAGATAGGGAAGGCGCTTGCT

Synonyms

Publications