jgi.p|Nanoce1779_2|415636, mRNA_3835 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|415636
Unique NamemRNA_3835
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length869
Alignment locationscaffold_8:156012..156953 +

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Properties
Property NameValue
TranscriptId415722
TrackFilteredModels2
ProteinId415636
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:156012..156953 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|415636gene_3835Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|415636mRNA_3835-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3835CDS_3835Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3835 ID=mRNA_3835|Name=jgi.p|Nanoce1779_2|415636|organism=Nannochloropsis oceanica|type=mRNA|length=869bp
GATAAGGATAAAAGAGAGAATAAAGGATGAGGATAAGAAGTAGGTTAGGA
TTAGGATAAGACAAGAGTAGTATAAACTTCTGTTTCATTGTAATTCAATC
TCATCTCCCCGATAGTCAATCTTTTCACAAAGTTTTCAGCTTCCTTCCCT
ATTTTCTGTGCACAGAACCCCAGTCGACCTGCGCGCAAGACGTCAAATAT
GCCCATATAAGTCTGCTCACTTGGTGACGTCCTTTAGGCACCGCACTAGG
CATATATCCCACGACAGCCTCTCGACAGGCAGAGACCTCCAAATAATATT
TGCCAACCCCTGGTCTGGCCTTGCTAATCCTCATGTCCCGCGCGGAGAAT
CCTCCTCAATTCTTTCGTGGGGGCCGGCTCCTTCAAGAACACGTCATAGA
TGCTCACGGGAAATTTAAGAGTCAGCAGCCACATCTCATCAAGATGGAGC
AGAAATCACTTTGTCCATTCCACTATGCTGTCTTGCCTTATGCTGACATT
CTGTTAGCTGCACAGGCAGTCGACCAGTTGGATAAGGGGAACAGTTTTCG
GTCGCAACAGGCACATTCTCTTATTTGGGTTCCCCTTCAAATGACTTTTT
TTGGCCTTGCTTGTTGTACTCACTTAAGCGTTGATAGAGAGAGAAAGGAC
GCCTACGACGACGGTTTTGGATATCCCCTGCTTCTTCCTCTGTGCCCTCC
CAAGGCGTCTGTAGCCGATATCCTATTTTTCATTTTTAGGAACAGTTGTC
GGCATATTCTCATGTTTAAGTTCCCCTTCAGACGATGTGCCTTGGCTTAG
ATTGTTGAACTCATTTGAAGGTTGACGGCGAGATAGACAATTTGGATTCG
TTCACGTACATGGTTTCAG
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protein sequence of jgi.p|Nanoce1779_2|415636

>mRNA_3835-protein ID=mRNA_3835-protein|Name=jgi.p|Nanoce1779_2|415636|organism=Nannochloropsis oceanica|type=polypeptide|length=156bp
MSRAENPPQFFRGGRLLQEHVIDAHGKFKSQQPHLIKMEQKSLCPFHYAV
LPYADILLAAQAVDQLDKGNSFRSQQAHSLIWVPLQMTFFGLACCTHLSV
DRERKDAYDDGFGYPLLLPLCPPKASVADILFFIFRNSCRHILMFKFPFR
RCALA*
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mRNA from alignment at scaffold_8:156012..156953+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3835 ID=mRNA_3835|Name=jgi.p|Nanoce1779_2|415636|organism=Nannochloropsis oceanica|type=mRNA|length=942bp|location=Sequence derived from alignment at scaffold_8:156012..156953+ (Nannochloropsis oceanica)
GATAAGGATAAAAGAGAGAATAAAGGATGAGGATAAGAAGTAGGTTAGGA
TTAGGATAAGACAAGAGTAGTATAAACTTCTGTTTCATTGTAATTCAATC
TCATCTCCCCGATAGTCAATCTTTTCACAAAGTTTTCAGCTTCCTTCCCT
ATTTTCTGTGCACAGAACCCCAGTCGACCTGCGCGCAAGACGTCAAATAT
GCCCATATAAGTCTGCTCACTTGGTGACGTCCTTTAGGGTTGGTTTAAAG
GCCTTGCATAGCCTTGCGAAGCAACCTAAAAGACTTCTTACTCATCAAAG
CCACGAAACAGCACCGCACTAGGCATATATCCCACGACAGCCTCTCGACA
GGCAGAGACCTCCAAATAATATTTGCCAACCCCTGGTCTGGCCTTGCTAA
TCCTCATGTCCCGCGCGGAGAATCCTCCTCAATTCTTTCGTGGGGGCCGG
CTCCTTCAAGAACACGTCATAGATGCTCACGGGAAATTTAAGAGTCAGCA
GCCACATCTCATCAAGATGGAGCAGAAATCACTTTGTCCATTCCACTATG
CTGTCTTGCCTTATGCTGACATTCTGTTAGCTGCACAGGCAGTCGACCAG
TTGGATAAGGGGAACAGTTTTCGGTCGCAACAGGCACATTCTCTTATTTG
GGTTCCCCTTCAAATGACTTTTTTTGGCCTTGCTTGTTGTACTCACTTAA
GCGTTGATAGAGAGAGAAAGGACGCCTACGACGACGGTTTTGGATATCCC
CTGCTTCTTCCTCTGTGCCCTCCCAAGGCGTCTGTAGCCGATATCCTATT
TTTCATTTTTAGGAACAGTTGTCGGCATATTCTCATGTTTAAGTTCCCCT
TCAGACGATGTGCCTTGGCTTAGATTGTTGAACTCATTTGAAGGTTGACG
GCGAGATAGACAATTTGGATTCGTTCACGTACATGGTTTCAG
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Coding sequence (CDS) from alignment at scaffold_8:156012..156953+

>mRNA_3835 ID=mRNA_3835|Name=jgi.p|Nanoce1779_2|415636|organism=Nannochloropsis oceanica|type=CDS|length=468bp|location=Sequence derived from alignment at scaffold_8:156012..156953+ (Nannochloropsis oceanica)
ATGTCCCGCGCGGAGAATCCTCCTCAATTCTTTCGTGGGGGCCGGCTCCT
TCAAGAACACGTCATAGATGCTCACGGGAAATTTAAGAGTCAGCAGCCAC
ATCTCATCAAGATGGAGCAGAAATCACTTTGTCCATTCCACTATGCTGTC
TTGCCTTATGCTGACATTCTGTTAGCTGCACAGGCAGTCGACCAGTTGGA
TAAGGGGAACAGTTTTCGGTCGCAACAGGCACATTCTCTTATTTGGGTTC
CCCTTCAAATGACTTTTTTTGGCCTTGCTTGTTGTACTCACTTAAGCGTT
GATAGAGAGAGAAAGGACGCCTACGACGACGGTTTTGGATATCCCCTGCT
TCTTCCTCTGTGCCCTCCCAAGGCGTCTGTAGCCGATATCCTATTTTTCA
TTTTTAGGAACAGTTGTCGGCATATTCTCATGTTTAAGTTCCCCTTCAGA
CGATGTGCCTTGGCTTAG
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Synonyms
Publications