jgi.p|Nanoce1779_2|565320, mRNA_4121 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|565320
Unique NamemRNA_4121
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length339
Alignment locationscaffold_8:885664..886002 -

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Properties
Property NameValue
TranscriptId565406
TrackFilteredModels2
ProteinId565320
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:885664..886002 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|565320gene_4121Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4121CDS_4121Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|565320mRNA_4121-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4121 ID=mRNA_4121|Name=jgi.p|Nanoce1779_2|565320|organism=Nannochloropsis oceanica|type=mRNA|length=339bp
ATGGAGGAAGAAGGGAACAAACTGAAAAACCAAAATCAAGGCGGCAGCAG
CAGCAGCAGCAGCGGTAACGGCGGCGAAGGTTTTGGACCGTTGCCGGGAG
AGAAGGTGATTGCCTTGGATGAGAATCTCCCGGACGGGGCTCTTGAAGCC
TACTGGGCGGAGTTAAGGAGGGAGAGGGAGGTCCAACGAGGAGGTGGAGG
GGAAGGGGGGGGGGAAGAGAAGGAGAAGAGCGGGAAGGCGAAGCGGAGTA
CGATCAAGGTATGGGAGTGGATGGAGGAAGGCAGGGAGAGAGGGGAGGGA
AGGAGGGAAGATGGACGCAGAGGCGGAGAAGGGTATTAA
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protein sequence of jgi.p|Nanoce1779_2|565320

>mRNA_4121-protein ID=mRNA_4121-protein|Name=jgi.p|Nanoce1779_2|565320|organism=Nannochloropsis oceanica|type=polypeptide|length=113bp
MEEEGNKLKNQNQGGSSSSSSGNGGEGFGPLPGEKVIALDENLPDGALEA
YWAELRREREVQRGGGGEGGGEEKEKSGKAKRSTIKVWEWMEEGRERGEG
RREDGRRGGEGY*
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mRNA from alignment at scaffold_8:885664..886002-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4121 ID=mRNA_4121|Name=jgi.p|Nanoce1779_2|565320|organism=Nannochloropsis oceanica|type=mRNA|length=339bp|location=Sequence derived from alignment at scaffold_8:885664..886002- (Nannochloropsis oceanica)
ATGGAGGAAGAAGGGAACAAACTGAAAAACCAAAATCAAGGCGGCAGCAG
CAGCAGCAGCAGCGGTAACGGCGGCGAAGGTTTTGGACCGTTGCCGGGAG
AGAAGGTGATTGCCTTGGATGAGAATCTCCCGGACGGGGCTCTTGAAGCC
TACTGGGCGGAGTTAAGGAGGGAGAGGGAGGTCCAACGAGGAGGTGGAGG
GGAAGGGGGGGGGGAAGAGAAGGAGAAGAGCGGGAAGGCGAAGCGGAGTA
CGATCAAGGTATGGGAGTGGATGGAGGAAGGCAGGGAGAGAGGGGAGGGA
AGGAGGGAAGATGGACGCAGAGGCGGAGAAGGGTATTAA
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Coding sequence (CDS) from alignment at scaffold_8:885664..886002-

>mRNA_4121 ID=mRNA_4121|Name=jgi.p|Nanoce1779_2|565320|organism=Nannochloropsis oceanica|type=CDS|length=339bp|location=Sequence derived from alignment at scaffold_8:885664..886002- (Nannochloropsis oceanica)
ATGGAGGAAGAAGGGAACAAACTGAAAAACCAAAATCAAGGCGGCAGCAG
CAGCAGCAGCAGCGGTAACGGCGGCGAAGGTTTTGGACCGTTGCCGGGAG
AGAAGGTGATTGCCTTGGATGAGAATCTCCCGGACGGGGCTCTTGAAGCC
TACTGGGCGGAGTTAAGGAGGGAGAGGGAGGTCCAACGAGGAGGTGGAGG
GGAAGGGGGGGGGGAAGAGAAGGAGAAGAGCGGGAAGGCGAAGCGGAGTA
CGATCAAGGTATGGGAGTGGATGGAGGAAGGCAGGGAGAGAGGGGAGGGA
AGGAGGGAAGATGGACGCAGAGGCGGAGAAGGGTATTAA
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Synonyms
Publications