jgi.p|Nanoce1779_2|585792, mRNA_3905 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|585792
Unique NamemRNA_3905
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1013
Alignment locationscaffold_8:360495..362713 -

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Properties
Property NameValue
TranscriptId585878
TrackFilteredModels2
ProteinId585792
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:360495..362713 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585792gene_3905Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585792mRNA_3905-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3905CDS_3905Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3905 ID=mRNA_3905|Name=jgi.p|Nanoce1779_2|585792|organism=Nannochloropsis oceanica|type=mRNA|length=1013bp
GCGACGCCGGCCGAGGTCGAGCCATACCATGTCACCAGCGGCAGCAGCAG
CGCCGGAAGCTTAAGCCGACTCTTGGACTATGACTTACCTTTGCCCCATG
ATTGGATACATAATTCTCAGATGGACATTAATGCGCTGTCCTTTTCGTAT
TCCTACTCCTACTCCTTTGCCAAGACACCTGAGCCGAGCGAAACGGCCAG
TCGCACGACGACCTCGGTGGTGGCCGCCACGGCACAAGACACTCCGAGAC
ACCCATCTCAATCCGGTGAGATTCCTATTGTGACCATGGTGCTCCTCATG
GCGGGTTCCCCCGAAGAACAGAAGGAGGCCATCGCTGCTATCGTCACCTA
CCTCAAGGCACATATGCAGCAATGGTTTGGGCAAAATGTCGAGATCACCA
CGGGAGCCCCCAACCTCATCAACCTCCGTCCTCGTTCCCTGCAGTCGACG
TCCAAAGGTCGATTATGTACAATAGATGCTCCCCAAGACGAAATATACAT
TGAGCTTCGCAATTTTGACGATGTGGCACAAGTCCAAGACATTTTAACTG
GTATCATGACAGGCACCATTGTCTTGACAGCTGGAAAGGAGGGCGGTACC
TCGATCGCGGTGAAGGACTCCATTTGCCGCGCGGAGACGACTCTCAGCTT
CGTGCCCCCGCCGATGGAAACTCTTCACGACACAACCGACGCGAAAGACA
TGTCCAAGCCATTGGCTCCTCTCCATATTGCATTGATTGTTGTGGTGGGC
GTAAGCGTCCTCTTTGCGGCCGTCTTCTTGGCCCGCCGTTACATGGTTCC
CAAGCCTCGCTCTGCGATTGTGCTGTCGTCCTAAAACAGGTTGCTAAATG
TTGTGGTGCAACTAAGGCTCATTATTTGAATGGATATGATGAGTGCTTGA
CCTAAACATGTATGTATTCTTTGAAAGTGGTTGACTATTCGGGAGAAGCG
AGGGAGGTGTATGTATGTGAGAAAAAACATACTCTCAGGAGACATGGAGA
TAGCGCGGATGAC
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protein sequence of jgi.p|Nanoce1779_2|585792

>mRNA_3905-protein ID=mRNA_3905-protein|Name=jgi.p|Nanoce1779_2|585792|organism=Nannochloropsis oceanica|type=polypeptide|length=238bp
MDINALSFSYSYSYSFAKTPEPSETASRTTTSVVAATAQDTPRHPSQSGE
IPIVTMVLLMAGSPEEQKEAIAAIVTYLKAHMQQWFGQNVEITTGAPNLI
NLRPRSLQSTSKGRLCTIDAPQDEIYIELRNFDDVAQVQDILTGIMTGTI
VLTAGKEGGTSIAVKDSICRAETTLSFVPPPMETLHDTTDAKDMSKPLAP
LHIALIVVVGVSVLFAAVFLARRYMVPKPRSAIVLSS*
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mRNA from alignment at scaffold_8:360495..362713-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3905 ID=mRNA_3905|Name=jgi.p|Nanoce1779_2|585792|organism=Nannochloropsis oceanica|type=mRNA|length=2219bp|location=Sequence derived from alignment at scaffold_8:360495..362713- (Nannochloropsis oceanica)
GCGACGCCGGCCGAGGTCGAGCCATACCATGTCACCAGCGGCAGCAGCAG
CGCCGGAAGCTTAAGCCGACTCTTGGACTATGACTTACCTTTGCCCCATG
ATTGGATACATAATGTAAGAGATACCTCCGACAATGGAGAAGGGGAGAGA
GCAATTGGCGTGTTTGGGACGCACTTTGGACCTACTTGTCTACCGTGTCC
GGCTCTGAGGGAGGGGGAGATGAGGACGGATGGAGGTTTCACGTAACTAG
AGGGCGGACGATGCATTCACCTGCAGTTTATTTGATCACACAATTTTTCC
ACTACTATGTAACCCAATGCACAGTCTCAGATGGACATTAATGCGCTGTC
CTTTTCGTATTCCTACTCCTACTCCTTTGCCAAGACACCTGAGCCGAGCG
AAACGGCCAGTCGCACGGTATGAGTCGTCGACCACATGAGCGAGAATTAT
CGCTATTGCTTCATCTTGTCATCACTCGTGAAGCGTATATAATTATGTTG
GTGGCGGTCTTCCTCTACTCTACTACATATGTGTACCTTAAACAGGCGAC
GCCGGCCGAGGTCGAGCCATACCATGTCACCAGCGGCAGCAGCAGCGCCG
GAAGCTTAAGCCGACTCTTGGACTATGACTTACCTTTGCCCCATGATTGG
ATACATAATGTAAGAGATACCCCCGACAATGGAGAAGGGGAGAGAGCAAT
TGGCGTGTTTGGGACGCACTTTGGACCTACTTGTCTACCGTGTCCGGCTC
TGAGGGAGGGGGAGATGAGGACGGATGGAGGTTTCACGTAACTAGAGGGC
GGACGATGCATTCACCTGCAGTTTATTTGATCACACAATTTTTCCACTAC
TATGTAACCCAATGCACAGTCTCAGATGGACATTAATGCGCTGTCCTTTT
CGTATTCCTACTCCTACTCCTTTGCCAAGACACCTGAGCCGAGCGAAACG
GCCAGTCGCACGGTATGAGTCGTCGACCACATGAGCGAGAATTATCGCTA
TTGCTTCATCTTGTCATCACTCGTGAAGCGTATATAATTATGTTGGTGGC
GGTCCTGCTTCATTTTCGTGCTGCTCTCATTCTCTCTTATCACAATTATC
CTTCTCCCCTTCCAATCAGACGACCTCGGTGGTGGCCGCCACGGCACAAG
ACACTCCGAGACACCCATCTCAATCCGGTGAGATTCCTATTGTGACCATG
GTGCTCCTCATGGCGGGTTCCCCCGAAGAACAGAAGGAGGCCATCGCTGC
TATCGTCACCTACCTCAAGGCACATATGCAGCAATGGTTTGGGCAAAATG
TCGAGATCACCACGGGAGCCCCCAACCTCATCAACCTCCGTCCTCGTTCC
CTGCAGTCGACGTCCAAAGGTCGATTATGTACAATAGATGCTCCCCAAGA
CGAAATATACATTGAGCTTCGCAATTTTGACGATGTGGTACGTGTCTAAA
ATAGAATGAGTGGGGAGGGACTATTTTGGAGTTTTCCCTATTTGTGGTCA
CTTGCTCCTTTAATTATACCGAACACTAGTTGTTCCTCGGGTATTACTTA
AAAAGTGATTGCCTTTTCCACCATTATTGCATTTTTCCACACTCGTCTCC
CCTCCCCTATTGTTTTCATTCTTCGACATCAAGCATCTTCTCTCATCTTG
CTCAATCTCTTCCTTTTTTCTCGGCCACACAACTCACTGCAAAGCCATAA
TACTCCCTTTCTTCACCATGATTACCCACAGGCACAAGTCCAAGACATTT
TAACTGGTATCATGACAGGCACCATTGTCTTGACAGCTGGAAAGGAGGGC
GGTACCTCGATCGCGGTGAAGGACTCCATTTGCCGCGCGGAGACGACTCT
CAGCTTCGTGCCCCCGCCGATGGAAACTCTTCACGACACAACCGACGCGA
AAGACATGTCCAAGCCATTGGCTCCTCTCCATATTGCATTGATTGTTGTG
GTGGGCGTAAGCGTCCTCTTTGCGGCCGTCTTCTTGGCCCGCCGTTACAT
GGTTCCCAAGCCTCGCTCTGCGATTGTGCTGTCGTCCTAAAACAGGTTGC
TAAATGTTGTGGTGCAACTAAGGCTCATTATTTGAATGGATATGATGAGT
GCTTGACCTAAACATGTATGTATTCTTTGAAAGTGGTTGACTATTCGGGA
GAAGCGAGGGAGGTGTATGTATGTGAGAAAAAACATACTCTCAGGAGACA
TGGAGATAGCGCGGATGAC
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Coding sequence (CDS) from alignment at scaffold_8:360495..362713-

>mRNA_3905 ID=mRNA_3905|Name=jgi.p|Nanoce1779_2|585792|organism=Nannochloropsis oceanica|type=CDS|length=2142bp|location=Sequence derived from alignment at scaffold_8:360495..362713- (Nannochloropsis oceanica)
GCACAAGTCCAAGACATTTTAACTGGTATCATGACAGGCACCATTGTCTT
GACAGCTGGAAAGGAGGGCGGTACCTCGATCGCGGTGAAGGACTCCATTT
GCCGCGCGGAGACGACTCTCAGCTTCGTGCCCCCGCCGATGGAAACTCTT
CACGACACAACCGACGCGAAAGACATGTCCAAGCCATTGGCTCCTCTCCA
TATTGCATTGATTGTTGTGGTGGGCGTAAGCGTCCTCTTTGCGGCCGTCT
TCTTGGCCCGCCGTTACATGGTTCCCAAGCCTCGCTCTGCGATTGTGCTG
TCGTCCTAAACGACCTCGGTGGTGGCCGCCACGGCACAAGACACTCCGAG
ACACCCATCTCAATCCGGTGAGATTCCTATTGTGACCATGGTGCTCCTCA
TGGCGGGTTCCCCCGAAGAACAGAAGGAGGCCATCGCTGCTATCGTCACC
TACCTCAAGGCACATATGCAGCAATGGTTTGGGCAAAATGTCGAGATCAC
CACGGGAGCCCCCAACCTCATCAACCTCCGTCCTCGTTCCCTGCAGTCGA
CGTCCAAAGGTCGATTATGTACAATAGATGCTCCCCAAGACGAAATATAC
ATTGAGCTTCGCAATTTTGACGATGTGATGGACATTAATGCGCTGTCCTT
TTCGTATTCCTACTCCTACTCCTTTGCCAAGACACCTGAGCCGAGCGAAA
CGGCCAGTCGCACGGCACAAGTCCAAGACATTTTAACTGGTATCATGACA
GGCACCATTGTCTTGACAGCTGGAAAGGAGGGCGGTACCTCGATCGCGGT
GAAGGACTCCATTTGCCGCGCGGAGACGACTCTCAGCTTCGTGCCCCCGC
CGATGGAAACTCTTCACGACACAACCGACGCGAAAGACATGTCCAAGCCA
TTGGCTCCTCTCCATATTGCATTGATTGTTGTGGTGGGCGTAAGCGTCCT
CTTTGCGGCCGTCTTCTTGGCCCGCCGTTACATGGTTCCCAAGCCTCGCT
CTGCGATTGTGCTGTCGTCCTAAACGACCTCGGTGGTGGCCGCCACGGCA
CAAGACACTCCGAGACACCCATCTCAATCCGGTGAGATTCCTATTGTGAC
CATGGTGCTCCTCATGGCGGGTTCCCCCGAAGAACAGAAGGAGGCCATCG
CTGCTATCGTCACCTACCTCAAGGCACATATGCAGCAATGGTTTGGGCAA
AATGTCGAGATCACCACGGGAGCCCCCAACCTCATCAACCTCCGTCCTCG
TTCCCTGCAGTCGACGTCCAAAGGTCGATTATGTACAATAGATGCTCCCC
AAGACGAAATATACATTGAGCTTCGCAATTTTGACGATGTGATGGACATT
AATGCGCTGTCCTTTTCGTATTCCTACTCCTACTCCTTTGCCAAGACACC
TGAGCCGAGCGAAACGGCCAGTCGCACGGCACAAGTCCAAGACATTTTAA
CTGGTATCATGACAGGCACCATTGTCTTGACAGCTGGAAAGGAGGGCGGT
ACCTCGATCGCGGTGAAGGACTCCATTTGCCGCGCGGAGACGACTCTCAG
CTTCGTGCCCCCGCCGATGGAAACTCTTCACGACACAACCGACGCGAAAG
ACATGTCCAAGCCATTGGCTCCTCTCCATATTGCATTGATTGTTGTGGTG
GGCGTAAGCGTCCTCTTTGCGGCCGTCTTCTTGGCCCGCCGTTACATGGT
TCCCAAGCCTCGCTCTGCGATTGTGCTGTCGTCCTAAACGACCTCGGTGG
TGGCCGCCACGGCACAAGACACTCCGAGACACCCATCTCAATCCGGTGAG
ATTCCTATTGTGACCATGGTGCTCCTCATGGCGGGTTCCCCCGAAGAACA
GAAGGAGGCCATCGCTGCTATCGTCACCTACCTCAAGGCACATATGCAGC
AATGGTTTGGGCAAAATGTCGAGATCACCACGGGAGCCCCCAACCTCATC
AACCTCCGTCCTCGTTCCCTGCAGTCGACGTCCAAAGGTCGATTATGTAC
AATAGATGCTCCCCAAGACGAAATATACATTGAGCTTCGCAATTTTGACG
ATGTGATGGACATTAATGCGCTGTCCTTTTCGTATTCCTACTCCTACTCC
TTTGCCAAGACACCTGAGCCGAGCGAAACGGCCAGTCGCACG
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Synonyms
Publications