jgi.p|Nanoce1779_2|586074, mRNA_3997 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|586074
Unique NamemRNA_3997
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length700
Alignment locationscaffold_8:589946..590645 +

Link to JBrowse

Properties
Property NameValue
TranscriptId586160
TrackFilteredModels2
ProteinId586074
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:589946..590645 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586074gene_3997Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586074mRNA_3997-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3997CDS_3997Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3997 ID=mRNA_3997|Name=jgi.p|Nanoce1779_2|586074|organism=Nannochloropsis oceanica|type=mRNA|length=700bp
CAAAAAAACGCAGCTCACTCATGCTCCTGGGCTTCCCCATCCCACTACTC
ATCACTACAGTGCCATGCCTGCCAACGACAGCTCGTCCTCGTCCTCTTCC
GGCTCCTCTTACAGCGACTCGGACCTGCCGCGCATCGACCTGTTTGGCAC
TGGAAATGTGGACCTGCGGACGGTGGCCCCGCTGTACGGCGTGACAAGCG
AGGAGGAACCTGATTACCTGGACTACGACATCAAGGGCCGGGGCACGGTC
GAGCGCATGTTTCTGTACTCAGGCTCGTCTTATCTCACGGGTATCCTCAC
CGGCGGCGTGTTGGGGGGACGTGTAGGGTGGAAGACGGCGCCGAGCCCAA
GATTTTGGCTGCGTTTGAACAGTGTAATGAATGGGGCGGGGAAATTGGGG
TCGAAGTGGGGGAACAACGCAGGTGTGTTTGCTCTGATGTATTCTCTGAG
TGAGTCGGCGTTGGATCATTTTGAAACCGATCAATTTTTGGGGGGGCATC
AAGCGACGAACCCTGTGTTGGCTGGTGCAATCAGTGGGTTGTTGTATAAG
TGCACGGCGGCGCCAAGGACGGCAGCGTTGGCTTTGGTCCTTGGGGGGGC
CGGGGCTGGTGCATTTTACGTCATGAGGGGACAGATGGAGCGGTTTTATT
ATCGGTAGACGGTAGGCTAAAGAAAAAAATATGTATACAAGCAAGGTTAA
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protein sequence of jgi.p|Nanoce1779_2|586074

>mRNA_3997-protein ID=mRNA_3997-protein|Name=jgi.p|Nanoce1779_2|586074|organism=Nannochloropsis oceanica|type=polypeptide|length=198bp
MPANDSSSSSSSGSSYSDSDLPRIDLFGTGNVDLRTVAPLYGVTSEEEPD
YLDYDIKGRGTVERMFLYSGSSYLTGILTGGVLGGRVGWKTAPSPRFWLR
LNSVMNGAGKLGSKWGNNAGVFALMYSLSESALDHFETDQFLGGHQATNP
VLAGAISGLLYKCTAAPRTAALALVLGGAGAGAFYVMRGQMERFYYR*
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mRNA from alignment at scaffold_8:589946..590645+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3997 ID=mRNA_3997|Name=jgi.p|Nanoce1779_2|586074|organism=Nannochloropsis oceanica|type=mRNA|length=700bp|location=Sequence derived from alignment at scaffold_8:589946..590645+ (Nannochloropsis oceanica)
CAAAAAAACGCAGCTCACTCATGCTCCTGGGCTTCCCCATCCCACTACTC
ATCACTACAGTGCCATGCCTGCCAACGACAGCTCGTCCTCGTCCTCTTCC
GGCTCCTCTTACAGCGACTCGGACCTGCCGCGCATCGACCTGTTTGGCAC
TGGAAATGTGGACCTGCGGACGGTGGCCCCGCTGTACGGCGTGACAAGCG
AGGAGGAACCTGATTACCTGGACTACGACATCAAGGGCCGGGGCACGGTC
GAGCGCATGTTTCTGTACTCAGGCTCGTCTTATCTCACGGGTATCCTCAC
CGGCGGCGTGTTGGGGGGACGTGTAGGGTGGAAGACGGCGCCGAGCCCAA
GATTTTGGCTGCGTTTGAACAGTGTAATGAATGGGGCGGGGAAATTGGGG
TCGAAGTGGGGGAACAACGCAGGTGTGTTTGCTCTGATGTATTCTCTGAG
TGAGTCGGCGTTGGATCATTTTGAAACCGATCAATTTTTGGGGGGGCATC
AAGCGACGAACCCTGTGTTGGCTGGTGCAATCAGTGGGTTGTTGTATAAG
TGCACGGCGGCGCCAAGGACGGCAGCGTTGGCTTTGGTCCTTGGGGGGGC
CGGGGCTGGTGCATTTTACGTCATGAGGGGACAGATGGAGCGGTTTTATT
ATCGGTAGACGGTAGGCTAAAGAAAAAAATATGTATACAAGCAAGGTTAA
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Coding sequence (CDS) from alignment at scaffold_8:589946..590645+

>mRNA_3997 ID=mRNA_3997|Name=jgi.p|Nanoce1779_2|586074|organism=Nannochloropsis oceanica|type=CDS|length=594bp|location=Sequence derived from alignment at scaffold_8:589946..590645+ (Nannochloropsis oceanica)
ATGCCTGCCAACGACAGCTCGTCCTCGTCCTCTTCCGGCTCCTCTTACAG
CGACTCGGACCTGCCGCGCATCGACCTGTTTGGCACTGGAAATGTGGACC
TGCGGACGGTGGCCCCGCTGTACGGCGTGACAAGCGAGGAGGAACCTGAT
TACCTGGACTACGACATCAAGGGCCGGGGCACGGTCGAGCGCATGTTTCT
GTACTCAGGCTCGTCTTATCTCACGGGTATCCTCACCGGCGGCGTGTTGG
GGGGACGTGTAGGGTGGAAGACGGCGCCGAGCCCAAGATTTTGGCTGCGT
TTGAACAGTGTAATGAATGGGGCGGGGAAATTGGGGTCGAAGTGGGGGAA
CAACGCAGGTGTGTTTGCTCTGATGTATTCTCTGAGTGAGTCGGCGTTGG
ATCATTTTGAAACCGATCAATTTTTGGGGGGGCATCAAGCGACGAACCCT
GTGTTGGCTGGTGCAATCAGTGGGTTGTTGTATAAGTGCACGGCGGCGCC
AAGGACGGCAGCGTTGGCTTTGGTCCTTGGGGGGGCCGGGGCTGGTGCAT
TTTACGTCATGAGGGGACAGATGGAGCGGTTTTATTATCGGTAG
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Synonyms
Publications