jgi.p|Nanoce1779_2|565615, mRNA_4857 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|565615
Unique NamemRNA_4857
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length747
Alignment locationscaffold_9:788459..789205 +

Link to JBrowse

Properties
Property NameValue
TranscriptId565701
TrackFilteredModels2
ProteinId565615
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:788459..789205 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|565615gene_4857Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|565615mRNA_4857-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4857CDS_4857Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4857 ID=mRNA_4857|Name=jgi.p|Nanoce1779_2|565615|organism=Nannochloropsis oceanica|type=mRNA|length=747bp
ATGGGAGGGGCGGAGGGGAGGAGAATGTCATTGATGTCGATGGCGTCACG
CCTGCCGCGGATCCGGTTAGGATGGCCTCATTCTTACAAGCAGGTCCAGC
ATTACTTGATAGCATTAAGGCAGAGAAAGTTTAATCACATGTACGTGGGG
GTGACGCAGGAGTTCTTGCCGTATGGGGGCCGGGTGGTGGAGGACTGGTT
GCGGCATAAGGGCTATGAAGGCTTTAGGGTGAAGACGAGGAGGGTGCTCT
TGGGCAAGGGTCCGGAGATTTACGCCACCGCCAAGCAGAATATGGTGAAC
TGGTCATGGAATGAGAAGGTGCGGTGGTCACAGTTCCTGGAGGGGGAACA
TGGGATTAACGTCGTGAGCAGGATCCGGGCGTATGGGTTGTTTTGGACGA
TGAACCCCTTGAGGAAGGTGTTGTGCCATGAAAAGGCTTGGGGGAAGCAG
GGCGGGGCTGTGGCGGCCGTCGCGGTCAGTACGCTGCAGGGGCATTTACT
GGAGGGGGAGGAGAGGTTTTGTGTGTGTTGGGAAGGGGGGAAGCAAGGGG
ACGTGTGGTTTGACATGCTGAGTTTTAGTAGGGGGGGCTTTCCCTTGGGG
AAGTTGTTGATGCCGTTGATCCGGCCGTTACAGGACCGTTTCTTTGCCGA
CTTGGGCAATGCCATGCAGAGTGCTGTAAGAGAAGCAGTGGCCCTGAGGG
AAAAGGAAGCGGAAGAGGCGAAGCTGGCCCGGAAATGGCGCAAGTGA
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protein sequence of jgi.p|Nanoce1779_2|565615

>mRNA_4857-protein ID=mRNA_4857-protein|Name=jgi.p|Nanoce1779_2|565615|organism=Nannochloropsis oceanica|type=polypeptide|length=249bp
MGGAEGRRMSLMSMASRLPRIRLGWPHSYKQVQHYLIALRQRKFNHMYVG
VTQEFLPYGGRVVEDWLRHKGYEGFRVKTRRVLLGKGPEIYATAKQNMVN
WSWNEKVRWSQFLEGEHGINVVSRIRAYGLFWTMNPLRKVLCHEKAWGKQ
GGAVAAVAVSTLQGHLLEGEERFCVCWEGGKQGDVWFDMLSFSRGGFPLG
KLLMPLIRPLQDRFFADLGNAMQSAVREAVALREKEAEEAKLARKWRK*
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mRNA from alignment at scaffold_9:788459..789205+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4857 ID=mRNA_4857|Name=jgi.p|Nanoce1779_2|565615|organism=Nannochloropsis oceanica|type=mRNA|length=747bp|location=Sequence derived from alignment at scaffold_9:788459..789205+ (Nannochloropsis oceanica)
ATGGGAGGGGCGGAGGGGAGGAGAATGTCATTGATGTCGATGGCGTCACG
CCTGCCGCGGATCCGGTTAGGATGGCCTCATTCTTACAAGCAGGTCCAGC
ATTACTTGATAGCATTAAGGCAGAGAAAGTTTAATCACATGTACGTGGGG
GTGACGCAGGAGTTCTTGCCGTATGGGGGCCGGGTGGTGGAGGACTGGTT
GCGGCATAAGGGCTATGAAGGCTTTAGGGTGAAGACGAGGAGGGTGCTCT
TGGGCAAGGGTCCGGAGATTTACGCCACCGCCAAGCAGAATATGGTGAAC
TGGTCATGGAATGAGAAGGTGCGGTGGTCACAGTTCCTGGAGGGGGAACA
TGGGATTAACGTCGTGAGCAGGATCCGGGCGTATGGGTTGTTTTGGACGA
TGAACCCCTTGAGGAAGGTGTTGTGCCATGAAAAGGCTTGGGGGAAGCAG
GGCGGGGCTGTGGCGGCCGTCGCGGTCAGTACGCTGCAGGGGCATTTACT
GGAGGGGGAGGAGAGGTTTTGTGTGTGTTGGGAAGGGGGGAAGCAAGGGG
ACGTGTGGTTTGACATGCTGAGTTTTAGTAGGGGGGGCTTTCCCTTGGGG
AAGTTGTTGATGCCGTTGATCCGGCCGTTACAGGACCGTTTCTTTGCCGA
CTTGGGCAATGCCATGCAGAGTGCTGTAAGAGAAGCAGTGGCCCTGAGGG
AAAAGGAAGCGGAAGAGGCGAAGCTGGCCCGGAAATGGCGCAAGTGA
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Coding sequence (CDS) from alignment at scaffold_9:788459..789205+

>mRNA_4857 ID=mRNA_4857|Name=jgi.p|Nanoce1779_2|565615|organism=Nannochloropsis oceanica|type=CDS|length=747bp|location=Sequence derived from alignment at scaffold_9:788459..789205+ (Nannochloropsis oceanica)
ATGGGAGGGGCGGAGGGGAGGAGAATGTCATTGATGTCGATGGCGTCACG
CCTGCCGCGGATCCGGTTAGGATGGCCTCATTCTTACAAGCAGGTCCAGC
ATTACTTGATAGCATTAAGGCAGAGAAAGTTTAATCACATGTACGTGGGG
GTGACGCAGGAGTTCTTGCCGTATGGGGGCCGGGTGGTGGAGGACTGGTT
GCGGCATAAGGGCTATGAAGGCTTTAGGGTGAAGACGAGGAGGGTGCTCT
TGGGCAAGGGTCCGGAGATTTACGCCACCGCCAAGCAGAATATGGTGAAC
TGGTCATGGAATGAGAAGGTGCGGTGGTCACAGTTCCTGGAGGGGGAACA
TGGGATTAACGTCGTGAGCAGGATCCGGGCGTATGGGTTGTTTTGGACGA
TGAACCCCTTGAGGAAGGTGTTGTGCCATGAAAAGGCTTGGGGGAAGCAG
GGCGGGGCTGTGGCGGCCGTCGCGGTCAGTACGCTGCAGGGGCATTTACT
GGAGGGGGAGGAGAGGTTTTGTGTGTGTTGGGAAGGGGGGAAGCAAGGGG
ACGTGTGGTTTGACATGCTGAGTTTTAGTAGGGGGGGCTTTCCCTTGGGG
AAGTTGTTGATGCCGTTGATCCGGCCGTTACAGGACCGTTTCTTTGCCGA
CTTGGGCAATGCCATGCAGAGTGCTGTAAGAGAAGCAGTGGCCCTGAGGG
AAAAGGAAGCGGAAGAGGCGAAGCTGGCCCGGAAATGGCGCAAGTGA
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Synonyms
Publications