jgi.p|Nanoce1779_2|638886, mRNA_4768 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|638886
Unique NamemRNA_4768
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1230
Alignment locationscaffold_9:592165..593922 -

Link to JBrowse

Properties
Property NameValue
TranscriptId638972
TrackFilteredModels2
ProteinId638886
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:592165..593922 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|638886gene_4768Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|638886mRNA_4768-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4768CDS_4768Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4768 ID=mRNA_4768|Name=jgi.p|Nanoce1779_2|638886|organism=Nannochloropsis oceanica|type=mRNA|length=1230bp
ATGGCCGGTGGTGGAGCCGGTATAATAGAGACCATACTCACGTATCCCTT
GGACTTGGTGCGAACACGGTTTCAAATGGCGCGGAACGCTGACCTTACTA
GTAGCAGCAACAGCAGCATCATCACCAAACCGGATGCGCTCGGTCGCCCA
CCACGCTTTTCTCCAACCGTCGCCGGCATGCTCATGCAAATTTGTAGAGA
CGAAGGTTTCTTCCATCTGTATCGTGGTCTTCTGCCGCCCTTGCTGTCGG
AAGTGCCGAGGCGAGCTCTCAAATTCAGTGCGAATGATTTCTTCATAGAC
CTACTGCAACCGCCTTCGTCACAATCGGGTCCTTCCCCCAATAACAAGCT
CTCCATTACGCAGGCGACCCTCGCCGGTATGCTCACCGGCCTGACTGAAA
CCTTTTTTCATACGCCTTTCGAGCTCGTGAAGGTTCGACTTCAAACCCGA
GAATTCGCGCACTGTTCTAACACCTACGCATGTGCCTTGGAAATATGGGG
AAAAGAAGCAGCAGCAGCAGCAGCAGCATCGGCAGGAGGAGCTAGAGGAG
CAAGGGAGGCAAGACAGGGATTAGGATGGGGGGAAGGAGGAGGGCGGCTA
CGTGCCTTCTACCAAGGATGGGAAGCATATTTGTGGAGGCAGGGATTATG
GAATGGCTTATTTTTTGGGGGTGTTGCGTCTATTCGTGAGTACTGCCCTC
CAACATCACCTCTCCCTAATTCTGGATCCTCCTTCTTCTCTAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGTCGTCGTCGTGTCTATGACTTTTCCAC
TGGTCTAGTTGCTGGGTGTGTAGCTACCGTGGTCAACACTCCGTTTGATG
TGTGTAAGACACGCTTGCAGTGTATGAGTAGTGTAGCTGGTGCTGGTGAT
GCCATTGGTTTCCGTACGGGTGGTGGGTATCGCAGCGAAGGGGGAGGAGG
ATTGGTGACTGGAGGAGAAGGGGGAAGGGGAAGAGGAGGAGGGAGAGAGA
TTGTAGGGGGAGGAGGAAGAAGAGGAGGAGGAGCAACAGCCATGGCTACA
AATGTGAATACAAAAGTGTCTCTCCCTTGGGTGCTGCCGTTCTTGCGCCA
GCTGTACCAGGAAGAAGGCCTTCGGGCTTGTTTCAAAGGATTAAATGCAC
GATTGTATCGAGCGGGGCCGGGGAGTGGAGTGTTGCTCGTGGCATATGAG
GGGATTGTCAAAATGTTTTCTGGAGAGTAG
back to top

protein sequence of jgi.p|Nanoce1779_2|638886

>mRNA_4768-protein ID=mRNA_4768-protein|Name=jgi.p|Nanoce1779_2|638886|organism=Nannochloropsis oceanica|type=polypeptide|length=410bp
MAGGGAGIIETILTYPLDLVRTRFQMARNADLTSSSNSSIITKPDALGRP
PRFSPTVAGMLMQICRDEGFFHLYRGLLPPLLSEVPRRALKFSANDFFID
LLQPPSSQSGPSPNNKLSITQATLAGMLTGLTETFFHTPFELVKVRLQTR
EFAHCSNTYACALEIWGKEAAAAAAASAGGARGAREARQGLGWGEGGGRL
RAFYQGWEAYLWRQGLWNGLFFGGVASIREYCPPTSPLPNSGSSFFSSSS
SSSSSSSSRRRVYDFSTGLVAGCVATVVNTPFDVCKTRLQCMSSVAGAGD
AIGFRTGGGYRSEGGGGLVTGGEGGRGRGGGREIVGGGGRRGGGATAMAT
NVNTKVSLPWVLPFLRQLYQEEGLRACFKGLNARLYRAGPGSGVLLVAYE
GIVKMFSGE*
back to top

mRNA from alignment at scaffold_9:592165..593922-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4768 ID=mRNA_4768|Name=jgi.p|Nanoce1779_2|638886|organism=Nannochloropsis oceanica|type=mRNA|length=1758bp|location=Sequence derived from alignment at scaffold_9:592165..593922- (Nannochloropsis oceanica)
ATGGCCGGTGGTGGAGCCGGTATAATAGAGACCATACTCACGTATCCCTT
GGACTTGGTGCGAACACGGTTTCAAATGGCGCGGAACGCTGACCTTACTA
GTAGCAGCAACAGCAGCATCATCACCAAACCGGATGCGCTCGGTCGCCCA
CCACGCTTTTCTCCAACCGTCGCCGGCATGCTCATGCAAATTTGTAGAGA
CGAAGGTTTCTTCCATCTGTATCGTGGTCTTCTGCCGCCCTTGCTGTCGG
AAGTGCCGAGGCGAGCTCTCAAATTCAGTGCGAATGATTTCTTCATAGAC
CTACTGCAACCGCCTTCGTCACAATCGGGTCCTTCCCCCAATAACAAGCG
TAAGTTCAATTTCTCGTGTGTGGATAAGGACAATTCTTTCACCTTCCTCC
TGGTTTTATATTTTTTGGAGTGAAATGTGTCTATTTATTTTCTCTTAATA
TTTTTTTTCCAGAAAGCATGTGCTTTCGTCCCGTCCCTTGTTTCTCCCTT
CCATCACTTGCCCCCCCTCTCTTTTTCTCAAGATAACAGCACCTGGTATC
TCCCGACAGCGTTTTCCTTCCATGGGCTGTTGCGGTCAAAGTTGTGTGCG
ATAGAAATGTTTCGAACTGTTTTTTTTAATTTTTGATTCTTTTTTCAAAA
AAATCAAATATAACATTTCGATTGGTACAGGTTTTTAGTTGGGCCGCCGA
CTTTTCCTATGAGACGGGGCCCTGGTACCTTCCAGACAATTTTTACCCTT
TTTCTATGCTTTATTTTTCGCGTTTATAACTCTGTAGTTGTTGTGTATGG
GGCGCGTGTATTTCATGGGTTGAGTGATCGATATTCTGACCATGATTACT
TATCTCCTTCCTTTCTTTCACCCATAGTCTCCATTACGCAGGCGACCCTC
GCCGGTATGCTCACCGGCCTGACTGAAACCTTTTTTCATACGCCTTTCGA
GCTCGTGAAGGTTCGACTTCAAACCCGAGAATTCGCGCACTGTTCTAACA
CCTACGCATGTGCCTTGGAAATATGGGGAAAAGAAGCAGCAGCAGCAGCA
GCAGCATCGGCAGGAGGAGCTAGAGGAGCAAGGGAGGCAAGACAGGGATT
AGGATGGGGGGAAGGAGGAGGGCGGCTACGTGCCTTCTACCAAGGATGGG
AAGCATATTTGTGGAGGCAGGGATTATGGAATGGCTTATTTTTTGGGGGT
GTTGCGTCTATTCGTGAGTACTGCCCTCCAACATCACCTCTCCCTAATTC
TGGATCCTCCTTCTTCTCTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GTCGTCGTCGTGTCTATGACTTTTCCACTGGTCTAGTTGCTGGGTGTGTA
GCTACCGTGGTCAACACTCCGTTTGATGTGTGTAAGACACGCTTGCAGTG
TATGAGTAGTGTAGCTGGTGCTGGTGATGCCATTGGTTTCCGTACGGGTG
GTGGGTATCGCAGCGAAGGGGGAGGAGGATTGGTGACTGGAGGAGAAGGG
GGAAGGGGAAGAGGAGGAGGGAGAGAGATTGTAGGGGGAGGAGGAAGAAG
AGGAGGAGGAGCAACAGCCATGGCTACAAATGTGAATACAAAAGTGTCTC
TCCCTTGGGTGCTGCCGTTCTTGCGCCAGCTGTACCAGGAAGAAGGCCTT
CGGGCTTGTTTCAAAGGATTAAATGCACGATTGTATCGAGCGGGGCCGGG
GAGTGGAGTGTTGCTCGTGGCATATGAGGGGATTGTCAAAATGTTTTCTG
GAGAGTAG
back to top

Coding sequence (CDS) from alignment at scaffold_9:592165..593922-

>mRNA_4768 ID=mRNA_4768|Name=jgi.p|Nanoce1779_2|638886|organism=Nannochloropsis oceanica|type=CDS|length=2460bp|location=Sequence derived from alignment at scaffold_9:592165..593922- (Nannochloropsis oceanica)
TCTCCATTACGCAGGCGACCCTCGCCGGTATGCTCACCGGCCTGACTGAA
ACCTTTTTTCATACGCCTTTCGAGCTCGTGAAGGTTCGACTTCAAACCCG
AGAATTCGCGCACTGTTCTAACACCTACGCATGTGCCTTGGAAATATGGG
GAAAAGAAGCAGCAGCAGCAGCAGCAGCATCGGCAGGAGGAGCTAGAGGA
GCAAGGGAGGCAAGACAGGGATTAGGATGGGGGGAAGGAGGAGGGCGGCT
ACGTGCCTTCTACCAAGGATGGGAAGCATATTTGTGGAGGCAGGGATTAT
GGAATGGCTTATTTTTTGGGGGTGTTGCGTCTATTCGTGAGTACTGCCCT
CCAACATCACCTCTCCCTAATTCTGGATCCTCCTTCTTCTCTAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGTCGTCGTCGTGTCTATGACTTTTCCA
CTGGTCTAGTTGCTGGGTGTGTAGCTACCGTGGTCAACACTCCGTTTGAT
GTGTGTAAGACACGCTTGCAGTGTATGAGTAGTGTAGCTGGTGCTGGTGA
TGCCATTGGTTTCCGTACGGGTGGTGGGTATCGCAGCGAAGGGGGAGGAG
GATTGGTGACTGGAGGAGAAGGGGGAAGGGGAAGAGGAGGAGGGAGAGAG
ATTGTAGGGGGAGGAGGAAGAAGAGGAGGAGGAGCAACAGCCATGGCTAC
AAATGTGAATACAAAAGTGTCTCTCCCTTGGGTGCTGCCGTTCTTGCGCC
AGCTGTACCAGGAAGAAGGCCTTCGGGCTTGTTTCAAAGGATTAAATGCA
CGATTGTATCGAGCGGGGCCGGGGAGTGGAGTGTTGCTCGTGGCATATGA
GGGGATTGTCAAAATGTTTTCTGGAGAGTAGATGGCCGGTGGTGGAGCCG
GTATAATAGAGACCATACTCACGTATCCCTTGGACTTGGTGCGAACACGG
TTTCAAATGGCGCGGAACGCTGACCTTACTAGTAGCAGCAACAGCAGCAT
CATCACCAAACCGGATGCGCTCGGTCGCCCACCACGCTTTTCTCCAACCG
TCGCCGGCATGCTCATGCAAATTTGTAGAGACGAAGGTTTCTTCCATCTG
TATCGTGGTCTTCTGCCGCCCTTGCTGTCGGAAGTGCCGAGGCGAGCTCT
CAAATTCAGTGCGAATGATTTCTTCATAGACCTACTGCAACCGCCTTCGT
CACAATCGGGTCCTTCCCCCAATAACAAGCTCTCCATTACGCAGGCGACC
CTCGCCGGTATGCTCACCGGCCTGACTGAAACCTTTTTTCATACGCCTTT
CGAGCTCGTGAAGGTTCGACTTCAAACCCGAGAATTCGCGCACTGTTCTA
ACACCTACGCATGTGCCTTGGAAATATGGGGAAAAGAAGCAGCAGCAGCA
GCAGCAGCATCGGCAGGAGGAGCTAGAGGAGCAAGGGAGGCAAGACAGGG
ATTAGGATGGGGGGAAGGAGGAGGGCGGCTACGTGCCTTCTACCAAGGAT
GGGAAGCATATTTGTGGAGGCAGGGATTATGGAATGGCTTATTTTTTGGG
GGTGTTGCGTCTATTCGTGAGTACTGCCCTCCAACATCACCTCTCCCTAA
TTCTGGATCCTCCTTCTTCTCTAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGTCGTCGTCGTGTCTATGACTTTTCCACTGGTCTAGTTGCTGGGTGT
GTAGCTACCGTGGTCAACACTCCGTTTGATGTGTGTAAGACACGCTTGCA
GTGTATGAGTAGTGTAGCTGGTGCTGGTGATGCCATTGGTTTCCGTACGG
GTGGTGGGTATCGCAGCGAAGGGGGAGGAGGATTGGTGACTGGAGGAGAA
GGGGGAAGGGGAAGAGGAGGAGGGAGAGAGATTGTAGGGGGAGGAGGAAG
AAGAGGAGGAGGAGCAACAGCCATGGCTACAAATGTGAATACAAAAGTGT
CTCTCCCTTGGGTGCTGCCGTTCTTGCGCCAGCTGTACCAGGAAGAAGGC
CTTCGGGCTTGTTTCAAAGGATTAAATGCACGATTGTATCGAGCGGGGCC
GGGGAGTGGAGTGTTGCTCGTGGCATATGAGGGGATTGTCAAAATGTTTT
CTGGAGAGTAGATGGCCGGTGGTGGAGCCGGTATAATAGAGACCATACTC
ACGTATCCCTTGGACTTGGTGCGAACACGGTTTCAAATGGCGCGGAACGC
TGACCTTACTAGTAGCAGCAACAGCAGCATCATCACCAAACCGGATGCGC
TCGGTCGCCCACCACGCTTTTCTCCAACCGTCGCCGGCATGCTCATGCAA
ATTTGTAGAGACGAAGGTTTCTTCCATCTGTATCGTGGTCTTCTGCCGCC
CTTGCTGTCGGAAGTGCCGAGGCGAGCTCTCAAATTCAGTGCGAATGATT
TCTTCATAGACCTACTGCAACCGCCTTCGTCACAATCGGGTCCTTCCCCC
AATAACAAGC
back to top
Synonyms
Publications