jgi.p|Nanoce1779_2|548980, mRNA_1343 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|548980
Unique NamemRNA_1343
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1191
Alignment locationscaffold_1:346642..347874 -

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Properties
Property NameValue
TranscriptId549066
TrackFilteredModels2
ProteinId548980
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:346642..347874 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|548980gene_1343Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|548980mRNA_1343-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1343CDS_1343Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1343 ID=mRNA_1343|Name=jgi.p|Nanoce1779_2|548980|organism=Nannochloropsis oceanica|type=mRNA|length=1191bp
ATGGACCGCTTCATCTTCCAAACCGCCGCGATCGAACTTCAACAACCCGG
TGGCCCTGACAGCGCCCGTGTCCGCCTCGTCGGGAGCGTGCATATCGCTG
ACCCGACATATTTCAAGGCCTTGGAAGAAGCCTGTGCGGATTGCGACGTG
GTGCTCTACGAAATGATCACCTCAAAAGGAAACGTTCTGACAGACAACAC
GGACGACCGTTGGCCCGCCAAAGAGCAACTTGGCGTCGAGCTCGCCGCTA
CTGATGCCCTCCGGAACCTTGCCTCTGCCCACGGCCTCGAGCCACAACTG
GACAACATGCATTTTTTCGGGAAAAAAAACTGGTACCTCTCCGATATCAC
GCGCGAACAACTCTGTCTCCTCCAACGCGCCCGGGGCGAACGCGCTCTGG
ACGACACGACCAAAAGCCGCTTTGCCCACCTCCAGGAAATGGCACAAATT
TTTTGGGATGGATTTACGTCCCGTGGGAAAGTCTTGCCGAAATTCCTCTT
CATGCGAAACAACCTCTCGGCCCTCCCCTTCCGATTGCTGCGCTTGTGTA
TGTGGTTGACTCCAGCACCGGAGCTGCAGCTGCTGTTGTTGGACTGGGCA
CGGCAGTACCCTCCAGCAGGTGGATTTAGCAAAATTTTGAGGAGCATGGT
GGGGGCTGCGGTGCACGGGGATCTCCTGACTTTAAGGCGCTTAGCGTTCT
CGCAGATGCTGACGAGTAGTCAAATGTCCCCGGCCCCGGAGGTGTTGGTC
TTGGAAAGAAACAGCAAGGTGGTGCTTGATGTGGAGAAGGCATTAAAAAG
TGGCGCCAAGAAGGTGGCTGTATTGTATGGGGGTCTGCACATGAAAGACA
TGGAGGCCAAATTACGCCGACATCTAAATTTTCAGCGTGTGGCGGTGATG
GAGGGGGAGGTGGGGAGGGAGCGTGGAGCGCAATGGCATACGGCCTGGAC
GATGCCTGCCTATACAGCGCAGAAGCAGGTGTTGGTTGCGTTTTTGTGTA
TTGCTTTGCCATTGTTGCACTTGAGTGTTGGAGGGTTGGATTGGAGTGCG
ACGTTTGGGGGGCTTGCAAAAGATAGTCCGGCGCTTGGCTGGCAGGAGGT
GGTGTTGTACTTGTTGAGGCATATGTACATTTATTACGGGTTGTCGAGGT
GGGTGGTGGAATGGGAGAAGCAGTTGTTCGAGATGCGGTAA
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protein sequence of jgi.p|Nanoce1779_2|548980

>mRNA_1343-protein ID=mRNA_1343-protein|Name=jgi.p|Nanoce1779_2|548980|organism=Nannochloropsis oceanica|type=polypeptide|length=397bp
MDRFIFQTAAIELQQPGGPDSARVRLVGSVHIADPTYFKALEEACADCDV
VLYEMITSKGNVLTDNTDDRWPAKEQLGVELAATDALRNLASAHGLEPQL
DNMHFFGKKNWYLSDITREQLCLLQRARGERALDDTTKSRFAHLQEMAQI
FWDGFTSRGKVLPKFLFMRNNLSALPFRLLRLCMWLTPAPELQLLLLDWA
RQYPPAGGFSKILRSMVGAAVHGDLLTLRRLAFSQMLTSSQMSPAPEVLV
LERNSKVVLDVEKALKSGAKKVAVLYGGLHMKDMEAKLRRHLNFQRVAVM
EGEVGRERGAQWHTAWTMPAYTAQKQVLVAFLCIALPLLHLSVGGLDWSA
TFGGLAKDSPALGWQEVVLYLLRHMYIYYGLSRWVVEWEKQLFEMR*
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mRNA from alignment at scaffold_1:346642..347874-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1343 ID=mRNA_1343|Name=jgi.p|Nanoce1779_2|548980|organism=Nannochloropsis oceanica|type=mRNA|length=1233bp|location=Sequence derived from alignment at scaffold_1:346642..347874- (Nannochloropsis oceanica)
ATGGACCGCTTCATCTTCCAAACCGCCGCGATCGAACTTCAACAACCCGG
TGGCCCTGACAGCGCCCGTGTCCGCCTCGTCGGGAGCGTGCATATCGCTG
ACCCGACATATTTCAAGGCCTTGGAAGAAGCCTGTGCGGATTGCGACGTG
GTGCTCTACGAAATGATCACCTCAAAAGGAAACGTTCTGACAGACAACAC
GGACGACCGTTGGCCCGCCAAAGAGCAACTTGGCGTCGAGCTCGCCGCTA
CTGATGCCCTCCGGAACCTTGCCTCTGCCCACGGCCTCGAGCCACAACTG
GACAACATGCATTTTTTCGGGAAAAAAAACTGGTACCTCTCCGATATCAC
GCGCGAACAACTCTGTCTCCTCCAACGCGCCCGGGGCGAACGCGCTCTGG
ACGACACGACCAAAAGCCGCTTTGCCCACCTCCAGGAAATGGCACAAATT
TTTTGGGATGGATTTACGTCCCGTGGGAAAGTCTTGCCGAAATTCCTCTT
CATGCGAAACAACCTCTCGGCCCTCCCCTTCCGATTGCTGCGCTTGTGTA
TGTGGTTGACTCCAGCACCGGAGCTGCAGCTGCTGTTGTTGGACTGGGCA
CGGCAGTACCCTCCAGCAGGTGGATTTAGCAAAATTTTGAGGAGCATGGT
GGGGGCTGCGGTGCACGGGGATCTCCTGACTTTAAGGCGCTTAGCGTTCT
CGCAGATGCTGACGAGTAGTCAAATGTCCCCGGCCCCGGAGGTGTTGGTC
TTGGAAAGAAACAGCAAGGTGGTGCTTGATGTGGAGAAGGCATTAAAAAG
TGGCGCCAAGAAGGTGGCTGTATTGTATGGGGGTCTGCACATGAAAGACA
TGGAGGCCAAATTACGCCGACATCTAAATTTTCAGCGTGTGGCGGTGATG
GAGGGGGAGGTGGGGAGGGAGCGTGGAGCGCAATGGCATACGGCCTGGAC
GATGCCTGCCTATACAGCGCAGAAGCAGGTGTTGGTTGCGTTTTTGTGTA
TTGCTTTGCCATTGTTGCACTTGAGTGTTGGAGGGTTGGATTGGAGTGCG
ACGTTTGGGGGGCTTGCAAAAGATGTGTCGCAGCAGGTAGTGTCTGAAGG
AGGGGGGGCAGTGGAGAGTCCGGCGCTTGGCTGGCAGGAGGTGGTGTTGT
ACTTGTTGAGGCATATGTACATTTATTACGGGTTGTCGAGGTGGGTGGTG
GAATGGGAGAAGCAGTTGTTCGAGATGCGGTAA
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Coding sequence (CDS) from alignment at scaffold_1:346642..347874-

>mRNA_1343 ID=mRNA_1343|Name=jgi.p|Nanoce1779_2|548980|organism=Nannochloropsis oceanica|type=CDS|length=2382bp|location=Sequence derived from alignment at scaffold_1:346642..347874- (Nannochloropsis oceanica)
AGTCCGGCGCTTGGCTGGCAGGAGGTGGTGTTGTACTTGTTGAGGCATAT
GTACATTTATTACGGGTTGTCGAGGTGGGTGGTGGAATGGGAGAAGCAGT
TGTTCGAGATGCGGTAAATGGACCGCTTCATCTTCCAAACCGCCGCGATC
GAACTTCAACAACCCGGTGGCCCTGACAGCGCCCGTGTCCGCCTCGTCGG
GAGCGTGCATATCGCTGACCCGACATATTTCAAGGCCTTGGAAGAAGCCT
GTGCGGATTGCGACGTGGTGCTCTACGAAATGATCACCTCAAAAGGAAAC
GTTCTGACAGACAACACGGACGACCGTTGGCCCGCCAAAGAGCAACTTGG
CGTCGAGCTCGCCGCTACTGATGCCCTCCGGAACCTTGCCTCTGCCCACG
GCCTCGAGCCACAACTGGACAACATGCATTTTTTCGGGAAAAAAAACTGG
TACCTCTCCGATATCACGCGCGAACAACTCTGTCTCCTCCAACGCGCCCG
GGGCGAACGCGCTCTGGACGACACGACCAAAAGCCGCTTTGCCCACCTCC
AGGAAATGGCACAAATTTTTTGGGATGGATTTACGTCCCGTGGGAAAGTC
TTGCCGAAATTCCTCTTCATGCGAAACAACCTCTCGGCCCTCCCCTTCCG
ATTGCTGCGCTTGTGTATGTGGTTGACTCCAGCACCGGAGCTGCAGCTGC
TGTTGTTGGACTGGGCACGGCAGTACCCTCCAGCAGGTGGATTTAGCAAA
ATTTTGAGGAGCATGGTGGGGGCTGCGGTGCACGGGGATCTCCTGACTTT
AAGGCGCTTAGCGTTCTCGCAGATGCTGACGAGTAGTCAAATGTCCCCGG
CCCCGGAGGTGTTGGTCTTGGAAAGAAACAGCAAGGTGGTGCTTGATGTG
GAGAAGGCATTAAAAAGTGGCGCCAAGAAGGTGGCTGTATTGTATGGGGG
TCTGCACATGAAAGACATGGAGGCCAAATTACGCCGACATCTAAATTTTC
AGCGTGTGGCGGTGATGGAGGGGGAGGTGGGGAGGGAGCGTGGAGCGCAA
TGGCATACGGCCTGGACGATGCCTGCCTATACAGCGCAGAAGCAGGTGTT
GGTTGCGTTTTTGTGTATTGCTTTGCCATTGTTGCACTTGAGTGTTGGAG
GGTTGGATTGGAGTGCGACGTTTGGGGGGCTTGCAAAAGATAGTCCGGCG
CTTGGCTGGCAGGAGGTGGTGTTGTACTTGTTGAGGCATATGTACATTTA
TTACGGGTTGTCGAGGTGGGTGGTGGAATGGGAGAAGCAGTTGTTCGAGA
TGCGGTAAATGGACCGCTTCATCTTCCAAACCGCCGCGATCGAACTTCAA
CAACCCGGTGGCCCTGACAGCGCCCGTGTCCGCCTCGTCGGGAGCGTGCA
TATCGCTGACCCGACATATTTCAAGGCCTTGGAAGAAGCCTGTGCGGATT
GCGACGTGGTGCTCTACGAAATGATCACCTCAAAAGGAAACGTTCTGACA
GACAACACGGACGACCGTTGGCCCGCCAAAGAGCAACTTGGCGTCGAGCT
CGCCGCTACTGATGCCCTCCGGAACCTTGCCTCTGCCCACGGCCTCGAGC
CACAACTGGACAACATGCATTTTTTCGGGAAAAAAAACTGGTACCTCTCC
GATATCACGCGCGAACAACTCTGTCTCCTCCAACGCGCCCGGGGCGAACG
CGCTCTGGACGACACGACCAAAAGCCGCTTTGCCCACCTCCAGGAAATGG
CACAAATTTTTTGGGATGGATTTACGTCCCGTGGGAAAGTCTTGCCGAAA
TTCCTCTTCATGCGAAACAACCTCTCGGCCCTCCCCTTCCGATTGCTGCG
CTTGTGTATGTGGTTGACTCCAGCACCGGAGCTGCAGCTGCTGTTGTTGG
ACTGGGCACGGCAGTACCCTCCAGCAGGTGGATTTAGCAAAATTTTGAGG
AGCATGGTGGGGGCTGCGGTGCACGGGGATCTCCTGACTTTAAGGCGCTT
AGCGTTCTCGCAGATGCTGACGAGTAGTCAAATGTCCCCGGCCCCGGAGG
TGTTGGTCTTGGAAAGAAACAGCAAGGTGGTGCTTGATGTGGAGAAGGCA
TTAAAAAGTGGCGCCAAGAAGGTGGCTGTATTGTATGGGGGTCTGCACAT
GAAAGACATGGAGGCCAAATTACGCCGACATCTAAATTTTCAGCGTGTGG
CGGTGATGGAGGGGGAGGTGGGGAGGGAGCGTGGAGCGCAATGGCATACG
GCCTGGACGATGCCTGCCTATACAGCGCAGAAGCAGGTGTTGGTTGCGTT
TTTGTGTATTGCTTTGCCATTGTTGCACTTGAGTGTTGGAGGGTTGGATT
GGAGTGCGACGTTTGGGGGGCTTGCAAAAGAT
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Synonyms
Publications