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Properties
Property Name | Value |
TranscriptId | 573118 |
Track | FilteredModels2 |
ProteinId | 573032 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_1 | supercontig | scaffold_1:1190369..1192613 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1664 ID=mRNA_1664|Name=jgi.p|Nanoce1779_2|573032|organism=Nannochloropsis oceanica|type=mRNA|length=2020bp GGAGGACAGTGCCAGCACATGGCTCGGCGATTATTGCGGCGAAGACGGGA GAAACATATTTCATAGGCAGCACAAAACCACGCTCTCACCGAACCCACGG ATACATAATAGGGGTACTATTACGTGGAGCTACGACTAACAAGAGGGCCA TCCCAGCAAGGCGTACAGGGGCAGGTCAGCAGGGACAAAGCAAGGCCATA GCTAGCCATGCTCTGGATGTCCGCTGTGGACATGGGATCTCCGGTCTTCA TAACCGTGGGTGTTGCGCTGGTCACAACACTTTTGCTTGTGCATATGCGG CGCCATGCACAGACCACGCAGCCTCTTCCCCCCTCGTACCGAGGCTGGGT GCCCTTCCTGGGGGTGGGACTGGCATTCCTTAAGAATGTCAACGACTTTC TCATCAAAATGCATACGAAACACCTGAATGATAGCCCCTTTAGAATCTAT GTTGCGGGTAAATGGTGGTCTCTCGTGTACGCGCTGCCCGACGTAAAGCT AGTGCTAAATAGTAAGGAAAGCGATCTGTCCTTCTTGGAAGGCTTTGCGG ACTTGATGCAAGACATGCTACCAAAAGGGTTCACCTTCATACCACGGCAT CATTTCTTTCTCCCCCTTTTTCGAGACGCCAACATGCAGTGGTTCTGCAA TCTCCTTGCCGCCGAAGCTAAGACGCAGATACCATTACTCTTCCACGCCC CCTCCTCCTCCTCGTCGTCGTCTTATTCCTCATCCCCGTCATCCCCATCA ACCCCCCCGGGCCTGATTGACCTTTTTGACACATGCCGTCACCTAGTCAT GCGCCTCAATCTTCGCGTTCTATTCGGGCCACACATTTTAAAAGATGGTC GTTATGGGCAATTTTATGAGTGTTTTGACGTGATCGACCCGGAAAAAGGC CTGGTTGACATGATGTCTTCTCTTTTGCTCGGCCCCAGAAAAAAGGAACA GGCATGGGTAAAAATAAGAGGCTTAACAGAGGAGGCGCTGGTCTTGTACC GAAAAGCAAAGGAGGAACGAGGGAGGGAGGGAGAGGTAGGAGAGAAGGAA GAGCGTGCGGAAAGTGTTCTTGATCTATTGGTGCGGGAGGAGGTGGGCGG GTTGGACTTGGAGGAGTTGGTGGCGGACATGTTTGCCTTTGTGTTTGCGG CCTTTACAAATAGCTTTGCGGTTTTGGCGTGGTGTATATGGGAATTGGCG GGGAATGAGGAGGTGCGATCGCGGTTCGTCGCAGAATGCACCACCAGCAG CAGTGGCAGTTGCAGCAGCAGCAGCAGCAGCAGCAGATATCGCGACGAGA GTGTGGAGAAATTGGAGCAGCAGGAAATGCGCCAAGTGAGAAGTGACAGC AATAAGAAGACGAGCAAGTGCAAAGCAGACGACCACCATCTCTCCAACAT TGAGAATATGCGCGTCGGGAAAGCCGTCATCGATGAAGTCATTCGCCTTC ATTCCCCCGGGCTTTTCTTTCGCAAGGTGGTCAATCCTCATGGCCTCCTT CTGTCCACAGGACACCACGTCCCAGCCGGTGACTTTCTTGCTTTCTCAGC CCGACACATAAACACCCTCTCCTCCTTCTATCATAGCCCGTTGGATTTTG ACATCGACCGGTTTTTGGTCCGGGACGAGAAGAAGAAGGCGGGGATTTTC GCCCTGCAGTGGGGGGGAGGGAGGCATCCTTGTCTGGGGGCCAGATTCGC GGCGCTTGAGATTTTGTTGGTGCTGCGGGAGGTATTTGGGGAGGAAGGGA AGGGGGAAGGGAAGGGGATGAGGTTGTGGAGGGTGACGGAGGAGGTGGAG GTGAGTAAAGGACAGGTGGGGACGAGTGATAAGCCGGTGCATCCTGTTTA CGTGGGTGTACTTCTGAAGGGAGAGGAGGAGGTAAGGGAGTAAGCAAACA TGTGCTCCTGCAGGGAATGGTGGAGATGAGAGTCAAAAAAGCATACGTTA GAATGGATGAAGATGTAAATACCCATGAAAATTAAGGTATTTTATGTTGC GTCTTATTAACATAATCATA back to topprotein sequence of jgi.p|Nanoce1779_2|573032 >mRNA_1664-protein ID=mRNA_1664-protein|Name=jgi.p|Nanoce1779_2|573032|organism=Nannochloropsis oceanica|type=polypeptide|length=562bp MLWMSAVDMGSPVFITVGVALVTTLLLVHMRRHAQTTQPLPPSYRGWVPF LGVGLAFLKNVNDFLIKMHTKHLNDSPFRIYVAGKWWSLVYALPDVKLVL NSKESDLSFLEGFADLMQDMLPKGFTFIPRHHFFLPLFRDANMQWFCNLL AAEAKTQIPLLFHAPSSSSSSSYSSSPSSPSTPPGLIDLFDTCRHLVMRL NLRVLFGPHILKDGRYGQFYECFDVIDPEKGLVDMMSSLLLGPRKKEQAW VKIRGLTEEALVLYRKAKEERGREGEVGEKEERAESVLDLLVREEVGGLD LEELVADMFAFVFAAFTNSFAVLAWCIWELAGNEEVRSRFVAECTTSSSG SCSSSSSSSRYRDESVEKLEQQEMRQVRSDSNKKTSKCKADDHHLSNIEN MRVGKAVIDEVIRLHSPGLFFRKVVNPHGLLLSTGHHVPAGDFLAFSARH INTLSSFYHSPLDFDIDRFLVRDEKKKAGIFALQWGGGRHPCLGARFAAL EILLVLREVFGEEGKGEGKGMRLWRVTEEVEVSKGQVGTSDKPVHPVYVG VLLKGEEEVRE* back to topmRNA from alignment at scaffold_1:1190369..1192613- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1664 ID=mRNA_1664|Name=jgi.p|Nanoce1779_2|573032|organism=Nannochloropsis oceanica|type=mRNA|length=2245bp|location=Sequence derived from alignment at scaffold_1:1190369..1192613- (Nannochloropsis oceanica) GGAGGACAGTGCCAGCACATGGCTCGGCGATTATTGCGGCGAAGACGGGA
GAAACATATTTCATAGGCAGCACAAAACCACGCTCTCACCGAACCCACGG
ATACATAATAGGGGTACTATTACGTGGAGCTACGACTAACAAGAGGGCCA
TCCCAGCAAGGCGTACAGGGGCAGGTCAGCAGGGACAAAGCAAGTACGTA
CGACCCAAGAAGTGGACCTCGATCAGCGACATGGGGAGGTTAATTTCGGT
CGGCCTGGGCAATCATACAGTCTCCCCCGCCAGATATGTCCATGAATACA
AACGACCCATCAAATAACTCAATGTATCTCGAGAGATTGCCATTGTCAAT
ATCGATATGACAAAAGGCCAGGAAAATCATAATCACGCAATCAACTCAAC
AACAACAACACCGACCAGGGCCATAGCTAGCCATGCTCTGGATGTCCGCT
GTGGACATGGGATCTCCGGTCTTCATAACCGTGGGTGTTGCGCTGGTCAC
AACACTTTTGCTTGTGCATATGCGGCGCCATGCACAGACCACGCAGCCTC
TTCCCCCCTCGTACCGAGGCTGGGTGCCCTTCCTGGGGGTGGGACTGGCA
TTCCTTAAGAATGTCAACGACTTTCTCATCAAAATGCATACGAAACACCT
GAATGATAGCCCCTTTAGAATCTATGTTGCGGGTAAATGGTGGTCTCTCG
TGTACGCGCTGCCCGACGTAAAGCTAGTGCTAAATAGTAAGGAAAGCGAT
CTGTCCTTCTTGGAAGGCTTTGCGGACTTGATGCAAGACATGCTACCAAA
AGGGTTCACCTTCATACCACGGCATCATTTCTTTCTCCCCCTTTTTCGAG
ACGCCAACATGCAGTGGTTCTGCAATCTCCTTGCCGCCGAAGCTAAGACG
CAGATACCATTACTCTTCCACGCCCCCTCCTCCTCCTCGTCGTCGTCTTA
TTCCTCATCCCCGTCATCCCCATCAACCCCCCCGGGCCTGATTGACCTTT
TTGACACATGCCGTCACCTAGTCATGCGCCTCAATCTTCGCGTTCTATTC
GGGCCACACATTTTAAAAGATGGTCGTTATGGGCAATTTTATGAGTGTTT
TGACGTGATCGACCCGGAAAAAGGCCTGGTTGACATGATGTCTTCTCTTT
TGCTCGGCCCCAGAAAAAAGGAACAGGCATGGGTAAAAATAAGAGGCTTA
ACAGAGGAGGCGCTGGTCTTGTACCGAAAAGCAAAGGAGGAACGAGGGAG
GGAGGGAGAGGTAGGAGAGAAGGAAGAGCGTGCGGAAAGTGTTCTTGATC
TATTGGTGCGGGAGGAGGTGGGCGGGTTGGACTTGGAGGAGTTGGTGGCG
GACATGTTTGCCTTTGTGTTTGCGGCCTTTACAAATAGCTTTGCGGTTTT
GGCGTGGTGTATATGGGAATTGGCGGGGAATGAGGAGGTGCGATCGCGGT
TCGTCGCAGAATGCACCACCAGCAGCAGTGGCAGTTGCAGCAGCAGCAGC
AGCAGCAGCAGATATCGCGACGAGAGTGTGGAGAAATTGGAGCAGCAGGA
AATGCGCCAAGTGAGAAGTGACAGCAATAAGAAGACGAGCAAGTGCAAAG
CAGACGACCACCATCTCTCCAACATTGAGAATATGCGCGTCGGGAAAGCC
GTCATCGATGAAGTCATTCGCCTTCATTCCCCCGGGCTTTTCTTTCGCAA
GGTGGTCAATCCTCATGGCCTCCTTCTGTCCACAGGACACCACGTCCCAG
CCGGTGACTTTCTTGCTTTCTCAGCCCGACACATAAACACCCTCTCCTCC
TTCTATCATAGCCCGTTGGATTTTGACATCGACCGGTTTTTGGTCCGGGA
CGAGAAGAAGAAGGCGGGGATTTTCGCCCTGCAGTGGGGGGGAGGGAGGC
ATCCTTGTCTGGGGGCCAGATTCGCGGCGCTTGAGATTTTGTTGGTGCTG
CGGGAGGTATTTGGGGAGGAAGGGAAGGGGGAAGGGAAGGGGATGAGGTT
GTGGAGGGTGACGGAGGAGGTGGAGGTGAGTAAAGGACAGGTGGGGACGA
GTGATAAGCCGGTGCATCCTGTTTACGTGGGTGTACTTCTGAAGGGAGAG
GAGGAGGTAAGGGAGTAAGCAAACATGTGCTCCTGCAGGGAATGGTGGAG
ATGAGAGTCAAAAAAGCATACGTTAGAATGGATGAAGATGTAAATACCCA
TGAAAATTAAGGTATTTTATGTTGCGTCTTATTAACATAATCATA back to topCoding sequence (CDS) from alignment at scaffold_1:1190369..1192613- >mRNA_1664 ID=mRNA_1664|Name=jgi.p|Nanoce1779_2|573032|organism=Nannochloropsis oceanica|type=CDS|length=1686bp|location=Sequence derived from alignment at scaffold_1:1190369..1192613- (Nannochloropsis oceanica) ATGCTCTGGATGTCCGCTGTGGACATGGGATCTCCGGTCTTCATAACCGT GGGTGTTGCGCTGGTCACAACACTTTTGCTTGTGCATATGCGGCGCCATG CACAGACCACGCAGCCTCTTCCCCCCTCGTACCGAGGCTGGGTGCCCTTC CTGGGGGTGGGACTGGCATTCCTTAAGAATGTCAACGACTTTCTCATCAA AATGCATACGAAACACCTGAATGATAGCCCCTTTAGAATCTATGTTGCGG GTAAATGGTGGTCTCTCGTGTACGCGCTGCCCGACGTAAAGCTAGTGCTA AATAGTAAGGAAAGCGATCTGTCCTTCTTGGAAGGCTTTGCGGACTTGAT GCAAGACATGCTACCAAAAGGGTTCACCTTCATACCACGGCATCATTTCT TTCTCCCCCTTTTTCGAGACGCCAACATGCAGTGGTTCTGCAATCTCCTT GCCGCCGAAGCTAAGACGCAGATACCATTACTCTTCCACGCCCCCTCCTC CTCCTCGTCGTCGTCTTATTCCTCATCCCCGTCATCCCCATCAACCCCCC CGGGCCTGATTGACCTTTTTGACACATGCCGTCACCTAGTCATGCGCCTC AATCTTCGCGTTCTATTCGGGCCACACATTTTAAAAGATGGTCGTTATGG GCAATTTTATGAGTGTTTTGACGTGATCGACCCGGAAAAAGGCCTGGTTG ACATGATGTCTTCTCTTTTGCTCGGCCCCAGAAAAAAGGAACAGGCATGG GTAAAAATAAGAGGCTTAACAGAGGAGGCGCTGGTCTTGTACCGAAAAGC AAAGGAGGAACGAGGGAGGGAGGGAGAGGTAGGAGAGAAGGAAGAGCGTG CGGAAAGTGTTCTTGATCTATTGGTGCGGGAGGAGGTGGGCGGGTTGGAC TTGGAGGAGTTGGTGGCGGACATGTTTGCCTTTGTGTTTGCGGCCTTTAC AAATAGCTTTGCGGTTTTGGCGTGGTGTATATGGGAATTGGCGGGGAATG AGGAGGTGCGATCGCGGTTCGTCGCAGAATGCACCACCAGCAGCAGTGGC AGTTGCAGCAGCAGCAGCAGCAGCAGCAGATATCGCGACGAGAGTGTGGA GAAATTGGAGCAGCAGGAAATGCGCCAAGTGAGAAGTGACAGCAATAAGA AGACGAGCAAGTGCAAAGCAGACGACCACCATCTCTCCAACATTGAGAAT ATGCGCGTCGGGAAAGCCGTCATCGATGAAGTCATTCGCCTTCATTCCCC CGGGCTTTTCTTTCGCAAGGTGGTCAATCCTCATGGCCTCCTTCTGTCCA CAGGACACCACGTCCCAGCCGGTGACTTTCTTGCTTTCTCAGCCCGACAC ATAAACACCCTCTCCTCCTTCTATCATAGCCCGTTGGATTTTGACATCGA CCGGTTTTTGGTCCGGGACGAGAAGAAGAAGGCGGGGATTTTCGCCCTGC AGTGGGGGGGAGGGAGGCATCCTTGTCTGGGGGCCAGATTCGCGGCGCTT GAGATTTTGTTGGTGCTGCGGGAGGTATTTGGGGAGGAAGGGAAGGGGGA AGGGAAGGGGATGAGGTTGTGGAGGGTGACGGAGGAGGTGGAGGTGAGTA AAGGACAGGTGGGGACGAGTGATAAGCCGGTGCATCCTGTTTACGTGGGT GTACTTCTGAAGGGAGAGGAGGAGGTAAGGGAGTAA back to top
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