jgi.p|Nanoce1779_2|17988, mRNA_4208 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|17988
Unique NamemRNA_4208
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length732
Alignment locationscaffold_10:13373..14104 +

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Properties
Property NameValue
TranscriptId18074
TrackFilteredModels2
ProteinId17988
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:13373..14104 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|17988gene_4208Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|17988mRNA_4208-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4208CDS_4208Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4208 ID=mRNA_4208|Name=jgi.p|Nanoce1779_2|17988|organism=Nannochloropsis oceanica|type=mRNA|length=732bp
CCCTCCCTCCCTCCCTCCCCCTCTCACTCCCTCCCTCTTGCAGATGGGCT
ACTCCACGCGTGTGCTGGACTTGCTGAAAATCGTGCATGACAAGTCAGCC
TAAACGGAGGGCGGACGCCGAGGGAAGGAGGGAGGGAGGAATGAAGAAGG
AAATAGCGTCGAGGAATGCGACACTTCCTCTACGTGTCTTTTCCCTTCCT
CTGTTTCCTCGTGATGGAGAGAGAGGGAGGGAAGGGGGATGTGAGAAACG
AAGTCGACGGCCACTCACTCTCTCTTGACATTCACCGTCAACGAGGAAAG
AGTAGAAGCAGACTTTCGAGGGGAAAGGGATGGAGGAAGGAGGGGAAAGG
AGTGGAGGAAGGAGGGGAAAGGGGTGGAGGAAGGAGAGGGAGGGAGCGTT
TTATGTGCCGTGATTTCATTGTCTGTCCTGTTGCCATTCGCCGCATGCAA
AGGTCGCGGGAGGACGAGGAAGGAGTGAAGGAGGGAGAAGAGGAGGAACG
ACCGTTTATGCATATATACACACTGACGTGGACGGAAGAGAAACTGGCGG
GAAATGAGGACGGACAGGAGAAAGGAGGAAGGAGAGGAGGAGGAAGGAGG
AAGGAGAAAGGAGGAAGGAGAGGAGGAGCTTGTGCGTACGCGGCACTATA
CTAAACCAAGGAAGGAAACATGACAAACTGAATTTATGAAGGCATTAATG
CCTTCGTTTCCATCAGGAGACGACCATTAAAT
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protein sequence of jgi.p|Nanoce1779_2|17988

>mRNA_4208-protein ID=mRNA_4208-protein|Name=jgi.p|Nanoce1779_2|17988|organism=Nannochloropsis oceanica|type=polypeptide|length=163bp
MRHFLYVSFPFLCFLVMEREGGKGDVRNEVDGHSLSLDIHRQRGKSRSRL
SRGKGWRKEGKGVEEGGERGGGRRGRERFMCRDFIVCPVAIRRMQRSRED
EEGVKEGEEEERPFMHIYTLTWTEEKLAGNEDGQEKGGRRGGGRRKEKGG
RRGGACAYAALY*
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mRNA from alignment at scaffold_10:13373..14104+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4208 ID=mRNA_4208|Name=jgi.p|Nanoce1779_2|17988|organism=Nannochloropsis oceanica|type=mRNA|length=732bp|location=Sequence derived from alignment at scaffold_10:13373..14104+ (Nannochloropsis oceanica)
CCCTCCCTCCCTCCCTCCCCCTCTCACTCCCTCCCTCTTGCAGATGGGCT
ACTCCACGCGTGTGCTGGACTTGCTGAAAATCGTGCATGACAAGTCAGCC
TAAACGGAGGGCGGACGCCGAGGGAAGGAGGGAGGGAGGAATGAAGAAGG
AAATAGCGTCGAGGAATGCGACACTTCCTCTACGTGTCTTTTCCCTTCCT
CTGTTTCCTCGTGATGGAGAGAGAGGGAGGGAAGGGGGATGTGAGAAACG
AAGTCGACGGCCACTCACTCTCTCTTGACATTCACCGTCAACGAGGAAAG
AGTAGAAGCAGACTTTCGAGGGGAAAGGGATGGAGGAAGGAGGGGAAAGG
AGTGGAGGAAGGAGGGGAAAGGGGTGGAGGAAGGAGAGGGAGGGAGCGTT
TTATGTGCCGTGATTTCATTGTCTGTCCTGTTGCCATTCGCCGCATGCAA
AGGTCGCGGGAGGACGAGGAAGGAGTGAAGGAGGGAGAAGAGGAGGAACG
ACCGTTTATGCATATATACACACTGACGTGGACGGAAGAGAAACTGGCGG
GAAATGAGGACGGACAGGAGAAAGGAGGAAGGAGAGGAGGAGGAAGGAGG
AAGGAGAAAGGAGGAAGGAGAGGAGGAGCTTGTGCGTACGCGGCACTATA
CTAAACCAAGGAAGGAAACATGACAAACTGAATTTATGAAGGCATTAATG
CCTTCGTTTCCATCAGGAGACGACCATTAAAT
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Coding sequence (CDS) from alignment at scaffold_10:13373..14104+

>mRNA_4208 ID=mRNA_4208|Name=jgi.p|Nanoce1779_2|17988|organism=Nannochloropsis oceanica|type=CDS|length=489bp|location=Sequence derived from alignment at scaffold_10:13373..14104+ (Nannochloropsis oceanica)
ATGCGACACTTCCTCTACGTGTCTTTTCCCTTCCTCTGTTTCCTCGTGAT
GGAGAGAGAGGGAGGGAAGGGGGATGTGAGAAACGAAGTCGACGGCCACT
CACTCTCTCTTGACATTCACCGTCAACGAGGAAAGAGTAGAAGCAGACTT
TCGAGGGGAAAGGGATGGAGGAAGGAGGGGAAAGGAGTGGAGGAAGGAGG
GGAAAGGGGTGGAGGAAGGAGAGGGAGGGAGCGTTTTATGTGCCGTGATT
TCATTGTCTGTCCTGTTGCCATTCGCCGCATGCAAAGGTCGCGGGAGGAC
GAGGAAGGAGTGAAGGAGGGAGAAGAGGAGGAACGACCGTTTATGCATAT
ATACACACTGACGTGGACGGAAGAGAAACTGGCGGGAAATGAGGACGGAC
AGGAGAAAGGAGGAAGGAGAGGAGGAGGAAGGAGGAAGGAGAAAGGAGGA
AGGAGAGGAGGAGCTTGTGCGTACGCGGCACTATACTAA
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Synonyms
Publications