jgi.p|Nanoce1779_2|589051, mRNA_4420 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|589051
Unique NamemRNA_4420
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1787
Alignment locationscaffold_10:539092..540878 -

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Properties
Property NameValue
TranscriptId589137
TrackFilteredModels2
ProteinId589051
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_10supercontigscaffold_10:539092..540878 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589051gene_4420Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589051mRNA_4420-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4420CDS_4420Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4420 ID=mRNA_4420|Name=jgi.p|Nanoce1779_2|589051|organism=Nannochloropsis oceanica|type=mRNA|length=1787bp
ATTCATTCAAAGATCAATGTTCACGGAGATGGACAAGCCAAGAAGAACGA
CAGCAAGTGGAGCAGTCAAAAACACCCCTGGTTGAGGCTCTCGCCCTAGC
TGCCACGCGCATCAAAGCTCCCTTTTTCTTCCCAGGTCATAAAATGGGAC
GCGGATTGCCTGTAGGGCTTTCAGGACCCTTCGCACGAAGCGCAGCCGAT
GCCGATGTTGTTGCTAAACGTAGACATGTCAGGGATAGCGTGTGGCAGCA
TGACTTACCCGAGATTCCAGAGCTCGATAATTTGTTCGCTCCCGAGGGGC
CTATTCAAGAAGCGGAGATGTTGGCTGCGCAGGCATTTGGCGGGGCTCAG
CGAACGTGGTTTCTGGTCAATGGTAGTACCGCTGGGGTTCTGGCAGCATT
GCTGGCAGTGGTACGACGCCATCAGCAGCAGCAGCAGCAACAACCTAATG
GAGCATCACGAATTAGCAAAGTGCTTCTTCCACGAAATGTGCACAAGTCA
GCGATTAATGGTTTGATTCTTGCGGGAGCCGATCCAGTGTTTCTCAGTCC
TGTCTATGACAAAGAATGGGATATTTGCCACGGCATCCCCATAGATGGTG
AAGGTGGGTTGGATGACGCTTTAAAAGTACATGGCCCCGGTGGGGATATA
GCTGCGGTACTTTTGGTTTCGCCGACTTACCACGGTGTGATAATGGATAT
CAAACAAGCTGCCCTTCTTTGTGCCAGGTACAAGGTTCCGCTTATTGTCG
ATGAGGCACATGGCGCCCACTTAGCATTTCTGGAACGAGACGGGCAGACA
GCAGCAATAAAACCAGCAGCGGCTGCGGCACTGGAGGGGGCTTTGGCGCT
AGGGGCGGACTTGGTGGTGCAGAGCACGCACAAGACGCTGACGGCGGTGA
GTCAGTGTGCGATGATGCATGCAGGGAACGGTCCATTGGTTGATGAGGGA
TTGCTTGAGTTTGTGGGTTCCGCTTTGCAGTTCGTCCAGAGCAGCTCGCC
AAATTATGTGTTGCTGGCTTCGTTGGACGGGGCAAGATGGCAGCTTGCGG
CTCCAGCAGGGGAGGGGAGGGGAGCTTTGCGACAGGCGCAGGTATTGGCG
AAAAAGGCAAAGCAGTTGTTGAGGAGCGAGACGCCATTTCCGGTTTTGGA
TCTGCCAGTAGTGGGGTCGATGAGGGGAGCTTTTGTGGGGTTGGACCCTC
TCAGAGTTACGGTTGGAATGATGGGGACGAGGATGAGTGGGTTTGATGCG
GACGAGGTCTTGATTGAGGAGCATGGGGTATATGCAGAGTTACCGGCATC
GAGGACATTGACTTTTGCGGTCGGCCCAGGGAACGTGGATGAGGACGTGG
AGAGATTAGTTGCTGCATTTAAGGCTTTGGCCGCCTCTTTGCAGGAGATA
GAGCTAAAGGAAGGAAAGAAGGGCAAGGACATGACCCCAAATGTCGTCGT
TGAGTTTCCCGCCTTTGATGGGCAGCAAGCAGCGGTGGGCACCCGGCGGT
GTGGGCCCCGTGAAGCTTATTTCACAGCATCTGAGGTAATGTCGACGAGC
GATGCGTCAATTGTGGGGCGTGCGAGTGCAGAGACTGTTTGCCCCTATCC
GCCCGGGATTCCTGTCTTGTTGCCGGGGGAATTAATCACTACGGAGGTCC
TGCGATTTTTGCAGGGGGTACTGGATGCGGGAGGGTCGGTGACGGGGTGT
AGTGATCCGAGCTTGGGGATGCTAAGGGTGCTTTGCTTGGAGTAGTTAGA
GTGCCGGAGTGAGCAATAGCGAAAAAGAAAAGATAGA
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protein sequence of jgi.p|Nanoce1779_2|589051

>mRNA_4420-protein ID=mRNA_4420-protein|Name=jgi.p|Nanoce1779_2|589051|organism=Nannochloropsis oceanica|type=polypeptide|length=534bp
MGRGLPVGLSGPFARSAADADVVAKRRHVRDSVWQHDLPEIPELDNLFAP
EGPIQEAEMLAAQAFGGAQRTWFLVNGSTAGVLAALLAVVRRHQQQQQQQ
PNGASRISKVLLPRNVHKSAINGLILAGADPVFLSPVYDKEWDICHGIPI
DGEGGLDDALKVHGPGGDIAAVLLVSPTYHGVIMDIKQAALLCARYKVPL
IVDEAHGAHLAFLERDGQTAAIKPAAAAALEGALALGADLVVQSTHKTLT
AVSQCAMMHAGNGPLVDEGLLEFVGSALQFVQSSSPNYVLLASLDGARWQ
LAAPAGEGRGALRQAQVLAKKAKQLLRSETPFPVLDLPVVGSMRGAFVGL
DPLRVTVGMMGTRMSGFDADEVLIEEHGVYAELPASRTLTFAVGPGNVDE
DVERLVAAFKALAASLQEIELKEGKKGKDMTPNVVVEFPAFDGQQAAVGT
RRCGPREAYFTASEVMSTSDASIVGRASAETVCPYPPGIPVLLPGELITT
EVLRFLQGVLDAGGSVTGCSDPSLGMLRVLCLE*
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mRNA from alignment at scaffold_10:539092..540878-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4420 ID=mRNA_4420|Name=jgi.p|Nanoce1779_2|589051|organism=Nannochloropsis oceanica|type=mRNA|length=1787bp|location=Sequence derived from alignment at scaffold_10:539092..540878- (Nannochloropsis oceanica)
ATTCATTCAAAGATCAATGTTCACGGAGATGGACAAGCCAAGAAGAACGA
CAGCAAGTGGAGCAGTCAAAAACACCCCTGGTTGAGGCTCTCGCCCTAGC
TGCCACGCGCATCAAAGCTCCCTTTTTCTTCCCAGGTCATAAAATGGGAC
GCGGATTGCCTGTAGGGCTTTCAGGACCCTTCGCACGAAGCGCAGCCGAT
GCCGATGTTGTTGCTAAACGTAGACATGTCAGGGATAGCGTGTGGCAGCA
TGACTTACCCGAGATTCCAGAGCTCGATAATTTGTTCGCTCCCGAGGGGC
CTATTCAAGAAGCGGAGATGTTGGCTGCGCAGGCATTTGGCGGGGCTCAG
CGAACGTGGTTTCTGGTCAATGGTAGTACCGCTGGGGTTCTGGCAGCATT
GCTGGCAGTGGTACGACGCCATCAGCAGCAGCAGCAGCAACAACCTAATG
GAGCATCACGAATTAGCAAAGTGCTTCTTCCACGAAATGTGCACAAGTCA
GCGATTAATGGTTTGATTCTTGCGGGAGCCGATCCAGTGTTTCTCAGTCC
TGTCTATGACAAAGAATGGGATATTTGCCACGGCATCCCCATAGATGGTG
AAGGTGGGTTGGATGACGCTTTAAAAGTACATGGCCCCGGTGGGGATATA
GCTGCGGTACTTTTGGTTTCGCCGACTTACCACGGTGTGATAATGGATAT
CAAACAAGCTGCCCTTCTTTGTGCCAGGTACAAGGTTCCGCTTATTGTCG
ATGAGGCACATGGCGCCCACTTAGCATTTCTGGAACGAGACGGGCAGACA
GCAGCAATAAAACCAGCAGCGGCTGCGGCACTGGAGGGGGCTTTGGCGCT
AGGGGCGGACTTGGTGGTGCAGAGCACGCACAAGACGCTGACGGCGGTGA
GTCAGTGTGCGATGATGCATGCAGGGAACGGTCCATTGGTTGATGAGGGA
TTGCTTGAGTTTGTGGGTTCCGCTTTGCAGTTCGTCCAGAGCAGCTCGCC
AAATTATGTGTTGCTGGCTTCGTTGGACGGGGCAAGATGGCAGCTTGCGG
CTCCAGCAGGGGAGGGGAGGGGAGCTTTGCGACAGGCGCAGGTATTGGCG
AAAAAGGCAAAGCAGTTGTTGAGGAGCGAGACGCCATTTCCGGTTTTGGA
TCTGCCAGTAGTGGGGTCGATGAGGGGAGCTTTTGTGGGGTTGGACCCTC
TCAGAGTTACGGTTGGAATGATGGGGACGAGGATGAGTGGGTTTGATGCG
GACGAGGTCTTGATTGAGGAGCATGGGGTATATGCAGAGTTACCGGCATC
GAGGACATTGACTTTTGCGGTCGGCCCAGGGAACGTGGATGAGGACGTGG
AGAGATTAGTTGCTGCATTTAAGGCTTTGGCCGCCTCTTTGCAGGAGATA
GAGCTAAAGGAAGGAAAGAAGGGCAAGGACATGACCCCAAATGTCGTCGT
TGAGTTTCCCGCCTTTGATGGGCAGCAAGCAGCGGTGGGCACCCGGCGGT
GTGGGCCCCGTGAAGCTTATTTCACAGCATCTGAGGTAATGTCGACGAGC
GATGCGTCAATTGTGGGGCGTGCGAGTGCAGAGACTGTTTGCCCCTATCC
GCCCGGGATTCCTGTCTTGTTGCCGGGGGAATTAATCACTACGGAGGTCC
TGCGATTTTTGCAGGGGGTACTGGATGCGGGAGGGTCGGTGACGGGGTGT
AGTGATCCGAGCTTGGGGATGCTAAGGGTGCTTTGCTTGGAGTAGTTAGA
GTGCCGGAGTGAGCAATAGCGAAAAAGAAAAGATAGA
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Coding sequence (CDS) from alignment at scaffold_10:539092..540878-

>mRNA_4420 ID=mRNA_4420|Name=jgi.p|Nanoce1779_2|589051|organism=Nannochloropsis oceanica|type=CDS|length=1602bp|location=Sequence derived from alignment at scaffold_10:539092..540878- (Nannochloropsis oceanica)
ATGGGACGCGGATTGCCTGTAGGGCTTTCAGGACCCTTCGCACGAAGCGC
AGCCGATGCCGATGTTGTTGCTAAACGTAGACATGTCAGGGATAGCGTGT
GGCAGCATGACTTACCCGAGATTCCAGAGCTCGATAATTTGTTCGCTCCC
GAGGGGCCTATTCAAGAAGCGGAGATGTTGGCTGCGCAGGCATTTGGCGG
GGCTCAGCGAACGTGGTTTCTGGTCAATGGTAGTACCGCTGGGGTTCTGG
CAGCATTGCTGGCAGTGGTACGACGCCATCAGCAGCAGCAGCAGCAACAA
CCTAATGGAGCATCACGAATTAGCAAAGTGCTTCTTCCACGAAATGTGCA
CAAGTCAGCGATTAATGGTTTGATTCTTGCGGGAGCCGATCCAGTGTTTC
TCAGTCCTGTCTATGACAAAGAATGGGATATTTGCCACGGCATCCCCATA
GATGGTGAAGGTGGGTTGGATGACGCTTTAAAAGTACATGGCCCCGGTGG
GGATATAGCTGCGGTACTTTTGGTTTCGCCGACTTACCACGGTGTGATAA
TGGATATCAAACAAGCTGCCCTTCTTTGTGCCAGGTACAAGGTTCCGCTT
ATTGTCGATGAGGCACATGGCGCCCACTTAGCATTTCTGGAACGAGACGG
GCAGACAGCAGCAATAAAACCAGCAGCGGCTGCGGCACTGGAGGGGGCTT
TGGCGCTAGGGGCGGACTTGGTGGTGCAGAGCACGCACAAGACGCTGACG
GCGGTGAGTCAGTGTGCGATGATGCATGCAGGGAACGGTCCATTGGTTGA
TGAGGGATTGCTTGAGTTTGTGGGTTCCGCTTTGCAGTTCGTCCAGAGCA
GCTCGCCAAATTATGTGTTGCTGGCTTCGTTGGACGGGGCAAGATGGCAG
CTTGCGGCTCCAGCAGGGGAGGGGAGGGGAGCTTTGCGACAGGCGCAGGT
ATTGGCGAAAAAGGCAAAGCAGTTGTTGAGGAGCGAGACGCCATTTCCGG
TTTTGGATCTGCCAGTAGTGGGGTCGATGAGGGGAGCTTTTGTGGGGTTG
GACCCTCTCAGAGTTACGGTTGGAATGATGGGGACGAGGATGAGTGGGTT
TGATGCGGACGAGGTCTTGATTGAGGAGCATGGGGTATATGCAGAGTTAC
CGGCATCGAGGACATTGACTTTTGCGGTCGGCCCAGGGAACGTGGATGAG
GACGTGGAGAGATTAGTTGCTGCATTTAAGGCTTTGGCCGCCTCTTTGCA
GGAGATAGAGCTAAAGGAAGGAAAGAAGGGCAAGGACATGACCCCAAATG
TCGTCGTTGAGTTTCCCGCCTTTGATGGGCAGCAAGCAGCGGTGGGCACC
CGGCGGTGTGGGCCCCGTGAAGCTTATTTCACAGCATCTGAGGTAATGTC
GACGAGCGATGCGTCAATTGTGGGGCGTGCGAGTGCAGAGACTGTTTGCC
CCTATCCGCCCGGGATTCCTGTCTTGTTGCCGGGGGAATTAATCACTACG
GAGGTCCTGCGATTTTTGCAGGGGGTACTGGATGCGGGAGGGTCGGTGAC
GGGGTGTAGTGATCCGAGCTTGGGGATGCTAAGGGTGCTTTGCTTGGAGT
AG
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Synonyms
Publications