jgi.p|Nanoce1779_2|670712, mRNA_4326 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|670712
Unique Name	mRNA_4326
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2024
Alignment location	scaffold_10:303167..305190 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	670798
Track	FilteredModels2
ProteinId	670712

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_10	supercontig	scaffold_10:303167..305190 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|670712	gene_4326	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|670712	mRNA_4326-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4326	CDS_4326	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_10:303167..305190+
coding sequence from alignment at scaffold_10:303167..305190+

mRNA sequence

>mRNA_4326 ID=mRNA_4326|Name=jgi.p|Nanoce1779_2|670712|organism=Nannochloropsis oceanica|type=mRNA|length=2024bp
CGCCCATCTGCACGCAGACACTTCTACTTACGTCGATCTCAGTTTTCATC
CCCCGCTCCATCGCCATATCGACAGGCGTGACGGGATCAGCCCCTTCACC
ATGATCTCCCCTCCACTCTGCGTCTGATGGAGCCTCCCCACTCCAAGCGG
CCTCTCTCGGCCCAGACCGCATTGCTGTCGCCCAAACGCCAGTGCCAGTA
CACCCAAGGCCAGGATGATGACGACGATGACATTGGTTTCCTTGCCAAGC
TTTTGAGGGAGGAAGAGGATCATCATCATCATCAGCAGCAGCAGCAGCAG
GTGGAGGAGGAGGAGGAGGGGTCCTCGCACCTTGACAAGCCTCAAGGAGC
CCAGAAGGAGGACGACGAGGAGGAGGAAGGGAACACATCAACATCCCATG
ACCCGGCCTTAAAAATTGCTTGCGTCAAGTCAATCTTGTACGAGCCCCAA
CAAGAAGGGGAGCACGAAAATACCACCACCGCTGCTTCCGCTTCCCTCGC
CGCTGTTCCCTTTCGTCGGCCCCAAACCTACAACGACAATGACTTGTTCC
GCTCTCTACAACTCATGGACTTTGAAAGTGCTCAGGCCTTGCTTGATTAT
GACCCCGAGTTGATGGTCTCTAGAGACGAGGACTTCGCTCAGCCCTTGGC
TGTGGCAGTCGAAGCCCGTTTTGAAAAAAACGTCAAGTATCTTTTGCATC
TTGGGTGTCCTTTGCAGGAAGTCGACGGACGGGGCTTCAGTGCTCTTCAC
ATAGCAGTGGAAGCCTTTAGAGACATGCCTTTTTTGTTGAGGTATTTGTT
GCAATACAAAGGGCTGGACATCAATTCGCGTGTGCCGCCTTTGCACGGGG
TGTGTCCGCTTCACCTTGCCGAGGACGAGCGGGTTTTAAAACTGCTTTTG
GGTTGTGGGGCGGACCCTTCCATGCTGGTGCCGGTGCAGGTTGGGAGGAG
GAGAAAGGACGGGGAGGAGGGCAAGGAAGAGGAGGAGGATGTGTTGGGCC
GTGTGGAGCGAACTTGGCCTCGGGGGAAGGGCAAGAAAAAAGCTCGTTTC
TTGCTCACGCGCTTGTCGCCGTACCAAAGCTACACGCTGGCCAAGCTGCG
CTTTATCACACACATGTATTGTTCCTGCCGATTCTCTTCCTCCTCATCCT
TTCTGCAGTCCTCCATTCTCACGGCTAGAGCAAAAATAATCGATGCACGT
CTGGACGAGGACTCGGAGTTGCTGGACCTCCAGAAAGAGGACAAGAACGA
AGAAGAGGCCGACATTTGGTGCAAAGAAGAGGTCAAAGGCCAAGTATTTA
GCTTTGTCGAAAATGGACATCTGTACCTTGCACGGAACAGGAGTACCGGC
CTTGATCATCCTCCTCCCCTGGCCGCTGTTGCTGTTGCTGCAGCTGCTTC
TGGTTCTTCTTCTCCATCACGGTCTCCCCCGCGGCCGGCAGCAGCAGCCG
CCGTGGGCGGAAGCAATGGTAATGGAGAGAAGAAAGGCAGACCGATCCCT
CCTCATCCGGCGGGCTTGTGCCCACTTTCAGTTTTGAAAGCTGCGAGAGC
AGATTTTTTTCTGGTAAGTAAGTATAAGGAGGAGTATGAGGGGGAGGGAA
AGATGGCCGCATACGACAATGGCAGCAATAGCTCCAGCAGCGTCAGCAAT
AGCTCCAGGAGCAGCAGCGGTAGGATGGATGGGGGGAAATGGGTGTTGTT
GCCAGCTTTGCCAAGGGTCGACATTCATTGGAGGGAGCCGAATGGGGGGA
AGGAGAACGAGGGAGGGGAGGGCGGGAAGAGCGGCATGGCTGCTGCTGTG
TTGCAGATGCTTGTTCATGAGGTGAGGGATGAGGGTGTGGTGGATGCGCT
TCAGGCCATGCTTTGGACTGGGATGGGGAAGAAAGTATGAAAGTGTCAGG
GTGTTTTTTAAGGTGTGCGGAGGCAGACAGGCGGAAGACAATGAGAAACG
GGACATGGGAAGATATGTAATCGATGTACAGAGAAGTGTTTGTAAACTGA
ACAAAGAAAGCTGATGGGTCTAAT

protein sequence of jgi.p|Nanoce1779_2|670712

>mRNA_4326-protein ID=mRNA_4326-protein|Name=jgi.p|Nanoce1779_2|670712|organism=Nannochloropsis oceanica|type=polypeptide|length=588bp
MEPPHSKRPLSAQTALLSPKRQCQYTQGQDDDDDDIGFLAKLLREEEDHH
HHQQQQQQVEEEEEGSSHLDKPQGAQKEDDEEEEGNTSTSHDPALKIACV
KSILYEPQQEGEHENTTTAASASLAAVPFRRPQTYNDNDLFRSLQLMDFE
SAQALLDYDPELMVSRDEDFAQPLAVAVEARFEKNVKYLLHLGCPLQEVD
GRGFSALHIAVEAFRDMPFLLRYLLQYKGLDINSRVPPLHGVCPLHLAED
ERVLKLLLGCGADPSMLVPVQVGRRRKDGEEGKEEEEDVLGRVERTWPRG
KGKKKARFLLTRLSPYQSYTLAKLRFITHMYCSCRFSSSSSFLQSSILTA
RAKIIDARLDEDSELLDLQKEDKNEEEADIWCKEEVKGQVFSFVENGHLY
LARNRSTGLDHPPPLAAVAVAAAASGSSSPSRSPPRPAAAAAVGGSNGNG
EKKGRPIPPHPAGLCPLSVLKAARADFFLVSKYKEEYEGEGKMAAYDNGS
NSSSSVSNSSRSSSGRMDGGKWVLLPALPRVDIHWREPNGGKENEGGEGG
KSGMAAAVLQMLVHEVRDEGVVDALQAMLWTGMGKKV*

mRNA from alignment at scaffold_10:303167..305190+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4326 ID=mRNA_4326|Name=jgi.p|Nanoce1779_2|670712|organism=Nannochloropsis oceanica|type=mRNA|length=2024bp|location=Sequence derived from alignment at scaffold_10:303167..305190+ (Nannochloropsis oceanica)
CGCCCATCTGCACGCAGACACTTCTACTTACGTCGATCTCAGTTTTCATC
CCCCGCTCCATCGCCATATCGACAGGCGTGACGGGATCAGCCCCTTCACC
ATGATCTCCCCTCCACTCTGCGTCTGATGGAGCCTCCCCACTCCAAGCGG
CCTCTCTCGGCCCAGACCGCATTGCTGTCGCCCAAACGCCAGTGCCAGTA
CACCCAAGGCCAGGATGATGACGACGATGACATTGGTTTCCTTGCCAAGC
TTTTGAGGGAGGAAGAGGATCATCATCATCATCAGCAGCAGCAGCAGCAG
GTGGAGGAGGAGGAGGAGGGGTCCTCGCACCTTGACAAGCCTCAAGGAGC
CCAGAAGGAGGACGACGAGGAGGAGGAAGGGAACACATCAACATCCCATG
ACCCGGCCTTAAAAATTGCTTGCGTCAAGTCAATCTTGTACGAGCCCCAA
CAAGAAGGGGAGCACGAAAATACCACCACCGCTGCTTCCGCTTCCCTCGC
CGCTGTTCCCTTTCGTCGGCCCCAAACCTACAACGACAATGACTTGTTCC
GCTCTCTACAACTCATGGACTTTGAAAGTGCTCAGGCCTTGCTTGATTAT
GACCCCGAGTTGATGGTCTCTAGAGACGAGGACTTCGCTCAGCCCTTGGC
TGTGGCAGTCGAAGCCCGTTTTGAAAAAAACGTCAAGTATCTTTTGCATC
TTGGGTGTCCTTTGCAGGAAGTCGACGGACGGGGCTTCAGTGCTCTTCAC
ATAGCAGTGGAAGCCTTTAGAGACATGCCTTTTTTGTTGAGGTATTTGTT
GCAATACAAAGGGCTGGACATCAATTCGCGTGTGCCGCCTTTGCACGGGG
TGTGTCCGCTTCACCTTGCCGAGGACGAGCGGGTTTTAAAACTGCTTTTG
GGTTGTGGGGCGGACCCTTCCATGCTGGTGCCGGTGCAGGTTGGGAGGAG
GAGAAAGGACGGGGAGGAGGGCAAGGAAGAGGAGGAGGATGTGTTGGGCC
GTGTGGAGCGAACTTGGCCTCGGGGGAAGGGCAAGAAAAAAGCTCGTTTC
TTGCTCACGCGCTTGTCGCCGTACCAAAGCTACACGCTGGCCAAGCTGCG
CTTTATCACACACATGTATTGTTCCTGCCGATTCTCTTCCTCCTCATCCT
TTCTGCAGTCCTCCATTCTCACGGCTAGAGCAAAAATAATCGATGCACGT
CTGGACGAGGACTCGGAGTTGCTGGACCTCCAGAAAGAGGACAAGAACGA
AGAAGAGGCCGACATTTGGTGCAAAGAAGAGGTCAAAGGCCAAGTATTTA
GCTTTGTCGAAAATGGACATCTGTACCTTGCACGGAACAGGAGTACCGGC
CTTGATCATCCTCCTCCCCTGGCCGCTGTTGCTGTTGCTGCAGCTGCTTC
TGGTTCTTCTTCTCCATCACGGTCTCCCCCGCGGCCGGCAGCAGCAGCCG
CCGTGGGCGGAAGCAATGGTAATGGAGAGAAGAAAGGCAGACCGATCCCT
CCTCATCCGGCGGGCTTGTGCCCACTTTCAGTTTTGAAAGCTGCGAGAGC
AGATTTTTTTCTGGTAAGTAAGTATAAGGAGGAGTATGAGGGGGAGGGAA
AGATGGCCGCATACGACAATGGCAGCAATAGCTCCAGCAGCGTCAGCAAT
AGCTCCAGGAGCAGCAGCGGTAGGATGGATGGGGGGAAATGGGTGTTGTT
GCCAGCTTTGCCAAGGGTCGACATTCATTGGAGGGAGCCGAATGGGGGGA
AGGAGAACGAGGGAGGGGAGGGCGGGAAGAGCGGCATGGCTGCTGCTGTG
TTGCAGATGCTTGTTCATGAGGTGAGGGATGAGGGTGTGGTGGATGCGCT
TCAGGCCATGCTTTGGACTGGGATGGGGAAGAAAGTATGAAAGTGTCAGG
GTGTTTTTTAAGGTGTGCGGAGGCAGACAGGCGGAAGACAATGAGAAACG
GGACATGGGAAGATATGTAATCGATGTACAGAGAAGTGTTTGTAAACTGA
ACAAAGAAAGCTGATGGGTCTAAT

Coding sequence (CDS) from alignment at scaffold_10:303167..305190+

>mRNA_4326 ID=mRNA_4326|Name=jgi.p|Nanoce1779_2|670712|organism=Nannochloropsis oceanica|type=CDS|length=1764bp|location=Sequence derived from alignment at scaffold_10:303167..305190+ (Nannochloropsis oceanica)
ATGGAGCCTCCCCACTCCAAGCGGCCTCTCTCGGCCCAGACCGCATTGCT
GTCGCCCAAACGCCAGTGCCAGTACACCCAAGGCCAGGATGATGACGACG
ATGACATTGGTTTCCTTGCCAAGCTTTTGAGGGAGGAAGAGGATCATCAT
CATCATCAGCAGCAGCAGCAGCAGGTGGAGGAGGAGGAGGAGGGGTCCTC
GCACCTTGACAAGCCTCAAGGAGCCCAGAAGGAGGACGACGAGGAGGAGG
AAGGGAACACATCAACATCCCATGACCCGGCCTTAAAAATTGCTTGCGTC
AAGTCAATCTTGTACGAGCCCCAACAAGAAGGGGAGCACGAAAATACCAC
CACCGCTGCTTCCGCTTCCCTCGCCGCTGTTCCCTTTCGTCGGCCCCAAA
CCTACAACGACAATGACTTGTTCCGCTCTCTACAACTCATGGACTTTGAA
AGTGCTCAGGCCTTGCTTGATTATGACCCCGAGTTGATGGTCTCTAGAGA
CGAGGACTTCGCTCAGCCCTTGGCTGTGGCAGTCGAAGCCCGTTTTGAAA
AAAACGTCAAGTATCTTTTGCATCTTGGGTGTCCTTTGCAGGAAGTCGAC
GGACGGGGCTTCAGTGCTCTTCACATAGCAGTGGAAGCCTTTAGAGACAT
GCCTTTTTTGTTGAGGTATTTGTTGCAATACAAAGGGCTGGACATCAATT
CGCGTGTGCCGCCTTTGCACGGGGTGTGTCCGCTTCACCTTGCCGAGGAC
GAGCGGGTTTTAAAACTGCTTTTGGGTTGTGGGGCGGACCCTTCCATGCT
GGTGCCGGTGCAGGTTGGGAGGAGGAGAAAGGACGGGGAGGAGGGCAAGG
AAGAGGAGGAGGATGTGTTGGGCCGTGTGGAGCGAACTTGGCCTCGGGGG
AAGGGCAAGAAAAAAGCTCGTTTCTTGCTCACGCGCTTGTCGCCGTACCA
AAGCTACACGCTGGCCAAGCTGCGCTTTATCACACACATGTATTGTTCCT
GCCGATTCTCTTCCTCCTCATCCTTTCTGCAGTCCTCCATTCTCACGGCT
AGAGCAAAAATAATCGATGCACGTCTGGACGAGGACTCGGAGTTGCTGGA
CCTCCAGAAAGAGGACAAGAACGAAGAAGAGGCCGACATTTGGTGCAAAG
AAGAGGTCAAAGGCCAAGTATTTAGCTTTGTCGAAAATGGACATCTGTAC
CTTGCACGGAACAGGAGTACCGGCCTTGATCATCCTCCTCCCCTGGCCGC
TGTTGCTGTTGCTGCAGCTGCTTCTGGTTCTTCTTCTCCATCACGGTCTC
CCCCGCGGCCGGCAGCAGCAGCCGCCGTGGGCGGAAGCAATGGTAATGGA
GAGAAGAAAGGCAGACCGATCCCTCCTCATCCGGCGGGCTTGTGCCCACT
TTCAGTTTTGAAAGCTGCGAGAGCAGATTTTTTTCTGGTAAGTAAGTATA
AGGAGGAGTATGAGGGGGAGGGAAAGATGGCCGCATACGACAATGGCAGC
AATAGCTCCAGCAGCGTCAGCAATAGCTCCAGGAGCAGCAGCGGTAGGAT
GGATGGGGGGAAATGGGTGTTGTTGCCAGCTTTGCCAAGGGTCGACATTC
ATTGGAGGGAGCCGAATGGGGGGAAGGAGAACGAGGGAGGGGAGGGCGGG
AAGAGCGGCATGGCTGCTGCTGTGTTGCAGATGCTTGTTCATGAGGTGAG
GGATGAGGGTGTGGTGGATGCGCTTCAGGCCATGCTTTGGACTGGGATGG
GGAAGAAAGTATGA

Synonyms

Publications