jgi.p|Nanoce1779_2|566078, mRNA_5735 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|566078
Unique NamemRNA_5735
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length474
Alignment locationscaffold_11:447770..448468 -

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Properties
Property NameValue
TranscriptId566164
TrackFilteredModels2
ProteinId566078
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:447770..448468 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|566078gene_5735Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|566078mRNA_5735-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5735CDS_5735Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5735 ID=mRNA_5735|Name=jgi.p|Nanoce1779_2|566078|organism=Nannochloropsis oceanica|type=mRNA|length=474bp
ATGGGCGGGCTGCTAAGCAAAGGGATTGAGTACGAAGCTGATGGCATGAC
GGTGAGACAATGTCTTTTCTGTGACATTGCGGCTGACAAACCAGGCCTTA
GACAGACAGCTGTGGCTTTTGAGGACGACAAGGTGGTGGTCTTTGCCCCC
CTGGAGCCATGCGCCTCAGAGCACTGGCTGGTCGTACCTCGGGCTCACCA
TCGTAGTGCTAGCACCTTGACGGCTAATGACTTACCTCTCCTGGTGCACA
TGAAAAACATTGGCTCCCAAATACTCGAACAAAAACAACCCGGGAAGAGC
CCTCAAGACACCCGCTTCTGCTTCCATGTCGAGCCGTTTAATTCAATTGC
TCACTTACACTTACACTGCCAAGTCTTGCCTTTCTTATCGCCCCTGTCAT
CGTGGAAGTACAAGGTCGGCACACAGTGGTGCTGGAGCTATGACTCTGTG
AGATTGCGTCTGGAAGAGGAATAA
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protein sequence of jgi.p|Nanoce1779_2|566078

>mRNA_5735-protein ID=mRNA_5735-protein|Name=jgi.p|Nanoce1779_2|566078|organism=Nannochloropsis oceanica|type=polypeptide|length=158bp
MGGLLSKGIEYEADGMTVRQCLFCDIAADKPGLRQTAVAFEDDKVVVFAP
LEPCASEHWLVVPRAHHRSASTLTANDLPLLVHMKNIGSQILEQKQPGKS
PQDTRFCFHVEPFNSIAHLHLHCQVLPFLSPLSSWKYKVGTQWCWSYDSV
RLRLEEE*
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mRNA from alignment at scaffold_11:447770..448468-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5735 ID=mRNA_5735|Name=jgi.p|Nanoce1779_2|566078|organism=Nannochloropsis oceanica|type=mRNA|length=699bp|location=Sequence derived from alignment at scaffold_11:447770..448468- (Nannochloropsis oceanica)
ATGGGCGGGCTGCTAAGCAAAGGGATTGAGTACGAAGCTGATGGCATGAC
GGTGAGACAATGTCTTTTCTGTGACATTGCGGCTGACAAACCAGGCCTTA
GACAGACAGCTGTGGCTTTTGAGGACGACAAGGTGCGATTTGTGTGTGTG
GACGACAACGATCATGAGCCATCCTCTATTTCACCTCCATCTCCCATCCT
TCATCCTTTCATCTTTCATCCTCATCCTCATCCTTCACCTCCTAGTATAG
GTGGTGGTCTTTGCCCCCCTGGAGCCATGCGCCTCAGAGCACTGGCTGGT
CGTACCTCGGGCTCACCATCGTAGTGCTAGCACCTTGACGGCTAATGACT
TACCTCTCCTGGTGCACATGAAAAACATTGGCTCCCAAATACTCGAACAA
AAACAACCCGGGAAGAGCCCTCAAGACACCCGCTTCTGCTTCCATGTCGA
GCCGTTTAATTCAAGTAAGTTTTCCTGTCTACTCTTGCATTATCATCATT
CGAGAATGAGGGGGACTCCTCACATGATTCGTCGCCAGCATCTCACACAC
TGCTTTTTCTATTTCTTGTAGTTGCTCACTTACACTTACACTGCCAAGTC
TTGCCTTTCTTATCGCCCCTGTCATCGTGGAAGTACAAGGTCGGCACACA
GTGGTGCTGGAGCTATGACTCTGTGAGATTGCGTCTGGAAGAGGAATAA
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Coding sequence (CDS) from alignment at scaffold_11:447770..448468-

>mRNA_5735 ID=mRNA_5735|Name=jgi.p|Nanoce1779_2|566078|organism=Nannochloropsis oceanica|type=CDS|length=1422bp|location=Sequence derived from alignment at scaffold_11:447770..448468- (Nannochloropsis oceanica)
TTGCTCACTTACACTTACACTGCCAAGTCTTGCCTTTCTTATCGCCCCTG
TCATCGTGGAAGTACAAGGTCGGCACACAGTGGTGCTGGAGCTATGACTC
TGTGAGATTGCGTCTGGAAGAGGAATAAGTGGTGGTCTTTGCCCCCCTGG
AGCCATGCGCCTCAGAGCACTGGCTGGTCGTACCTCGGGCTCACCATCGT
AGTGCTAGCACCTTGACGGCTAATGACTTACCTCTCCTGGTGCACATGAA
AAACATTGGCTCCCAAATACTCGAACAAAAACAACCCGGGAAGAGCCCTC
AAGACACCCGCTTCTGCTTCCATGTCGAGCCGTTTAATTCAAATGGGCGG
GCTGCTAAGCAAAGGGATTGAGTACGAAGCTGATGGCATGACGGTGAGAC
AATGTCTTTTCTGTGACATTGCGGCTGACAAACCAGGCCTTAGACAGACA
GCTGTGGCTTTTGAGGACGACAAGTTGCTCACTTACACTTACACTGCCAA
GTCTTGCCTTTCTTATCGCCCCTGTCATCGTGGAAGTACAAGGTCGGCAC
ACAGTGGTGCTGGAGCTATGACTCTGTGAGATTGCGTCTGGAAGAGGAAT
AAGTGGTGGTCTTTGCCCCCCTGGAGCCATGCGCCTCAGAGCACTGGCTG
GTCGTACCTCGGGCTCACCATCGTAGTGCTAGCACCTTGACGGCTAATGA
CTTACCTCTCCTGGTGCACATGAAAAACATTGGCTCCCAAATACTCGAAC
AAAAACAACCCGGGAAGAGCCCTCAAGACACCCGCTTCTGCTTCCATGTC
GAGCCGTTTAATTCAAATGGGCGGGCTGCTAAGCAAAGGGATTGAGTACG
AAGCTGATGGCATGACGGTGAGACAATGTCTTTTCTGTGACATTGCGGCT
GACAAACCAGGCCTTAGACAGACAGCTGTGGCTTTTGAGGACGACAAGTT
GCTCACTTACACTTACACTGCCAAGTCTTGCCTTTCTTATCGCCCCTGTC
ATCGTGGAAGTACAAGGTCGGCACACAGTGGTGCTGGAGCTATGACTCTG
TGAGATTGCGTCTGGAAGAGGAATAAGTGGTGGTCTTTGCCCCCCTGGAG
CCATGCGCCTCAGAGCACTGGCTGGTCGTACCTCGGGCTCACCATCGTAG
TGCTAGCACCTTGACGGCTAATGACTTACCTCTCCTGGTGCACATGAAAA
ACATTGGCTCCCAAATACTCGAACAAAAACAACCCGGGAAGAGCCCTCAA
GACACCCGCTTCTGCTTCCATGTCGAGCCGTTTAATTCAAATGGGCGGGC
TGCTAAGCAAAGGGATTGAGTACGAAGCTGATGGCATGACGGTGAGACAA
TGTCTTTTCTGTGACATTGCGGCTGACAAACCAGGCCTTAGACAGACAGC
TGTGGCTTTTGAGGACGACAAG
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Synonyms
Publications