jgi.p|Nanoce1779_2|589971, mRNA_5681 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|589971
Unique NamemRNA_5681
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1218
Alignment locationscaffold_11:310502..311868 -

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Properties
Property NameValue
TranscriptId590057
TrackFilteredModels2
ProteinId589971
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:310502..311868 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589971gene_5681Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|589971mRNA_5681-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5681CDS_5681Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5681 ID=mRNA_5681|Name=jgi.p|Nanoce1779_2|589971|organism=Nannochloropsis oceanica|type=mRNA|length=1218bp
CAGAGCATATCTTCTGTCTGCCCATCTACGTCGGTCACTCTCTCTCGCTG
AGCCTACGCCCTGATTGACAAGCACAGACAAATGATGGCTTCATCATTAC
CACAACGCCTCCCCGGCCTCCTTGTAGTGTCCCTCTTCTTCGCTCTTGTC
ACCGACGCACTTGTGTTGCCAGCATCTCTCTCCTGCCGGCAGCCGACGCG
CTTTACCGCTACCTCTGTTACGGGGACTAGACCACAAGCCTCGACTCTGT
CATTGTCGTCCTCGTCCTCCTTTTCCTTCTCCTTCCCCACGGCACTCTAC
CCCTCGTCTCTAAACTGCAAGAGCAGCAGCCATTCTCTAACCAGCCTGCG
CGCCATTGAAATCGTCGATGGCACGACAGGACAAGACGAAGAAGATGACA
CGCCGGCACCTACAGGCACGTTTGCTTGGTTCAAAAAGTGGTGGCAAAAG
ACCGCCAAAATCGACCGGAAGAAGCTCGCTGCCCTCGGCGCCAGTGCCCT
TTGTTCATACGGCCTAGTCAGCAACATCAACTACTGCGGCACCTTATGCG
CATCTTTCATCATCTTCACCAAAAGATACAATGTATCGCCTCTCGCGCCT
GGTCAATGGAAGACATTCCTGGGCGTGTACGGTACACTGTGGGTAGGGAT
GAATTTCCTGAGACCCTTGCGGGTGTGGCTCGCCCTCGGCATAACGCCCA
TCTTTGACAAGTGCGTGGAAAGGATCCGGGAAAGGCTCAATGTAAAGAAG
AGCGTGGCGCTGGGCATCACTATTTTTCTGGTGAATATCTGTGGTACTTT
CTCTTTCTTGGGCACCGGGTTGTATTTGAGTTCGTTGTACACTGGCGTGC
CGCTGTTTCCGCCTAAGCTATAGTAGCAGCAGCAGCAGCAGCAGCAGTAG
TAACAGATGTAGTCATAAAAATGCCGCTCGAGCACGTTTCATACAAGTAT
GGTGATCTCTCGCGACAGAATCACACGCGTGCGTGTGCGGGACGTGGCTT
GGGGAGACCTAGGGCCAGCACCCAAGCGCAAGCATACGCGCTAACCACAT
GAACCAAAACTAGAAAGAACAAAAGAGACGGGAAATAACCCAACAAGAAC
GACACGAACTACAACAATCCCTTCATAGAAAGCAGTGGCATTGGGCTGCA
CGATTTTTGAGGGCCTCCAATTTGAAAAGTGACGGAAAATGCCACCTGTC
TTTTTATCTGTTGTACAC
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protein sequence of jgi.p|Nanoce1779_2|589971

>mRNA_5681-protein ID=mRNA_5681-protein|Name=jgi.p|Nanoce1779_2|589971|organism=Nannochloropsis oceanica|type=polypeptide|length=264bp
MMASSLPQRLPGLLVVSLFFALVTDALVLPASLSCRQPTRFTATSVTGTR
PQASTLSLSSSSSFSFSFPTALYPSSLNCKSSSHSLTSLRAIEIVDGTTG
QDEEDDTPAPTGTFAWFKKWWQKTAKIDRKKLAALGASALCSYGLVSNIN
YCGTLCASFIIFTKRYNVSPLAPGQWKTFLGVYGTLWVGMNFLRPLRVWL
ALGITPIFDKCVERIRERLNVKKSVALGITIFLVNICGTFSFLGTGLYLS
SLYTGVPLFPPKL*
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mRNA from alignment at scaffold_11:310502..311868-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5681 ID=mRNA_5681|Name=jgi.p|Nanoce1779_2|589971|organism=Nannochloropsis oceanica|type=mRNA|length=1367bp|location=Sequence derived from alignment at scaffold_11:310502..311868- (Nannochloropsis oceanica)
CAGAGCATATCTTCTGTCTGCCCATCTACGTCGGTCACTCTCTCTCGCTG
AGCCTACGCCCTGATTGACAAGCACAGACAAATGATGGCTTCATCATTAC
CACAACGCCTCCCCGGCCTCCTTGTAGTGTCCCTCTTCTTCGCTCTTGTC
ACCGACGCACTTGTGTTGCCAGCATCTCTCTCCTGCCGGCAGCCGACGCG
CTTTACCGCTACCTCTGTTACGGGGACTAGACCACAAGCCTCGACTCTGT
CATTGTCGTCCTCGTCCTCCTTTTCCTTCTCCTTCCCCACGGCACTCTAC
CCCTCGTCTCTAAACTGCAAGAGCAGCAGCCATTCTCTAACCAGCCTGCG
CGCCATTGAAATCGTCGATGGCACGACAGGACAAGACGAAGAAGATGACA
CGCCGGCACCTACAGGCACGTTTGCTTGGTTCAAAAAGTGGTGGCAAAAG
ACCGCCAAAATCGACCGGAAGAAGCTCGCTGGTACGTCGTCCTCCTCTCC
TGCCCTTCTTCCCTCCCTTCCTCTCTTCCTCGTTCAATTCCCCTCCTCCA
AGCCAACCATGAACATGTATCTCTTTTACAGCCGACCCACTAACGTTTCC
TCTTTCCCCTTCACCCGTCTATCCCTCCAGCCCTCGGCGCCAGTGCCCTT
TGTTCATACGGCCTAGTCAGCAACATCAACTACTGCGGCACCTTATGCGC
ATCTTTCATCATCTTCACCAAAAGATACAATGTATCGCCTCTCGCGCCTG
GTCAATGGAAGACATTCCTGGGCGTGTACGGTACACTGTGGGTAGGGATG
AATTTCCTGAGACCCTTGCGGGTGTGGCTCGCCCTCGGCATAACGCCCAT
CTTTGACAAGTGCGTGGAAAGGATCCGGGAAAGGCTCAATGTAAAGAAGA
GCGTGGCGCTGGGCATCACTATTTTTCTGGTGAATATCTGTGGTACTTTC
TCTTTCTTGGGCACCGGGTTGTATTTGAGTTCGTTGTACACTGGCGTGCC
GCTGTTTCCGCCTAAGCTATAGTAGCAGCAGCAGCAGCAGCAGCAGTAGT
AACAGATGTAGTCATAAAAATGCCGCTCGAGCACGTTTCATACAAGTATG
GTGATCTCTCGCGACAGAATCACACGCGTGCGTGTGCGGGACGTGGCTTG
GGGAGACCTAGGGCCAGCACCCAAGCGCAAGCATACGCGCTAACCACATG
AACCAAAACTAGAAAGAACAAAAGAGACGGGAAATAACCCAACAAGAACG
ACACGAACTACAACAATCCCTTCATAGAAAGCAGTGGCATTGGGCTGCAC
GATTTTTGAGGGCCTCCAATTTGAAAAGTGACGGAAAATGCCACCTGTCT
TTTTATCTGTTGTACAC
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Coding sequence (CDS) from alignment at scaffold_11:310502..311868-

>mRNA_5681 ID=mRNA_5681|Name=jgi.p|Nanoce1779_2|589971|organism=Nannochloropsis oceanica|type=CDS|length=1584bp|location=Sequence derived from alignment at scaffold_11:310502..311868- (Nannochloropsis oceanica)
CCCTCGGCGCCAGTGCCCTTTGTTCATACGGCCTAGTCAGCAACATCAAC
TACTGCGGCACCTTATGCGCATCTTTCATCATCTTCACCAAAAGATACAA
TGTATCGCCTCTCGCGCCTGGTCAATGGAAGACATTCCTGGGCGTGTACG
GTACACTGTGGGTAGGGATGAATTTCCTGAGACCCTTGCGGGTGTGGCTC
GCCCTCGGCATAACGCCCATCTTTGACAAGTGCGTGGAAAGGATCCGGGA
AAGGCTCAATGTAAAGAAGAGCGTGGCGCTGGGCATCACTATTTTTCTGG
TGAATATCTGTGGTACTTTCTCTTTCTTGGGCACCGGGTTGTATTTGAGT
TCGTTGTACACTGGCGTGCCGCTGTTTCCGCCTAAGCTATAGATGATGGC
TTCATCATTACCACAACGCCTCCCCGGCCTCCTTGTAGTGTCCCTCTTCT
TCGCTCTTGTCACCGACGCACTTGTGTTGCCAGCATCTCTCTCCTGCCGG
CAGCCGACGCGCTTTACCGCTACCTCTGTTACGGGGACTAGACCACAAGC
CTCGACTCTGTCATTGTCGTCCTCGTCCTCCTTTTCCTTCTCCTTCCCCA
CGGCACTCTACCCCTCGTCTCTAAACTGCAAGAGCAGCAGCCATTCTCTA
ACCAGCCTGCGCGCCATTGAAATCGTCGATGGCACGACAGGACAAGACGA
AGAAGATGACACGCCGGCACCTACAGGCACGTTTGCTTGGTTCAAAAAGT
GGTGGCAAAAGACCGCCAAAATCGACCGGAAGAAGCTCGCTGCCCTCGGC
GCCAGTGCCCTTTGTTCATACGGCCTAGTCAGCAACATCAACTACTGCGG
CACCTTATGCGCATCTTTCATCATCTTCACCAAAAGATACAATGTATCGC
CTCTCGCGCCTGGTCAATGGAAGACATTCCTGGGCGTGTACGGTACACTG
TGGGTAGGGATGAATTTCCTGAGACCCTTGCGGGTGTGGCTCGCCCTCGG
CATAACGCCCATCTTTGACAAGTGCGTGGAAAGGATCCGGGAAAGGCTCA
ATGTAAAGAAGAGCGTGGCGCTGGGCATCACTATTTTTCTGGTGAATATC
TGTGGTACTTTCTCTTTCTTGGGCACCGGGTTGTATTTGAGTTCGTTGTA
CACTGGCGTGCCGCTGTTTCCGCCTAAGCTATAGATGATGGCTTCATCAT
TACCACAACGCCTCCCCGGCCTCCTTGTAGTGTCCCTCTTCTTCGCTCTT
GTCACCGACGCACTTGTGTTGCCAGCATCTCTCTCCTGCCGGCAGCCGAC
GCGCTTTACCGCTACCTCTGTTACGGGGACTAGACCACAAGCCTCGACTC
TGTCATTGTCGTCCTCGTCCTCCTTTTCCTTCTCCTTCCCCACGGCACTC
TACCCCTCGTCTCTAAACTGCAAGAGCAGCAGCCATTCTCTAACCAGCCT
GCGCGCCATTGAAATCGTCGATGGCACGACAGGACAAGACGAAGAAGATG
ACACGCCGGCACCTACAGGCACGTTTGCTTGGTTCAAAAAGTGGTGGCAA
AAGACCGCCAAAATCGACCGGAAGAAGCTCGCTG
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Synonyms
Publications