jgi.p|Nanoce1779_2|590090, mRNA_5715 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|590090
Unique NamemRNA_5715
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1047
Alignment locationscaffold_11:398282..399754 -

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Properties
Property NameValue
TranscriptId590176
TrackFilteredModels2
ProteinId590090
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:398282..399754 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590090gene_5715Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590090mRNA_5715-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5715CDS_5715Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5715 ID=mRNA_5715|Name=jgi.p|Nanoce1779_2|590090|organism=Nannochloropsis oceanica|type=mRNA|length=1047bp
CACGTGCCATATAATAAGTACTTCCCCGGAGGTTGTAAGAGCACCGATAT
AGTGATACCCCCAGCAAGTACGTTGCGTGCCATCAACAAATGACAGAGAA
AACTTCCTATTATGCCAGGGCCGCAAGGCTAATCTTGGGACGAAAGAAAA
AAAGCTAGCACCCCAGTAAGCAGCATCCAGCATCAGTTCGGCAATTTGGG
GTCAATGATGATGCACCGACACCGAGACCGAGACAAAGCCACTTCACATC
CCTCAAACACTGTCCACATCCATATGAGCTTGTTACAGATGACAGACGGC
AAACGAGGTACATCTTCGGGGGTGGGGGGCCCACGGGTGCTCAGTATTCT
CGATCGTCCTCTTGCTGCCAAGAAGGGGAGTGGAGGTGGTGGGAGTGGGG
GAGAAGTGAGTCTCAGTGCGTTCAGCTTCCTGTTTTCCGAAATGGTGCAG
TACTACCAGAGCCGCGTCCTGAGCATCGCAGACTTGGAGCGCAAGTTGGA
AGAGGCTGGATATGGCGTGGGTCACCGGATGCTAGAGCTGCTGGCTCTCC
GAGAACGACAGTACAGGCGTGAAACCAAGCTGATAGGGGTGCTACAGTTC
GTGTCTTCGACAGTGTGGAAGGCCCTCTTTAACAAGGTGGCGGACTCGCT
CGAGCGGTCTACAGAAAACGAGGACGAGTACATGATACATGAGCGGGAAC
CAATTACCAATGCTTTTGTGTCGGCCCCAGCTGACATAAGTCAATTGAAT
TGTGCAGCTTACATTGCGGGCATCATCTCCGGCGTCCTGAACGGCGCATC
ATTCCCTGCTGGGGTGACGGCCCATCACGTGGCGATTGGGGATGGGCAGC
GAGATAAGACTGTATTTCTCATCAAGTTTCGACAGGACGTTTTGCGGAGA
GAAGCTGCGTTATCTGCTTGACAGTGAATCGTCTGAGGCAGTGAAAGCCT
CGTGATCGAAGTTTTAAAGGAAAGAAAAAAGGCTTGTGCAGAGACTCGGA
GATGTTGGCCGCGACAGGCCTAATAATTATCCGCTTTTTGGTTGAGA
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protein sequence of jgi.p|Nanoce1779_2|590090

>mRNA_5715-protein ID=mRNA_5715-protein|Name=jgi.p|Nanoce1779_2|590090|organism=Nannochloropsis oceanica|type=polypeptide|length=239bp
MMMHRHRDRDKATSHPSNTVHIHMSLLQMTDGKRGTSSGVGGPRVLSILD
RPLAAKKGSGGGGSGGEVSLSAFSFLFSEMVQYYQSRVLSIADLERKLEE
AGYGVGHRMLELLALRERQYRRETKLIGVLQFVSSTVWKALFNKVADSLE
RSTENEDEYMIHEREPITNAFVSAPADISQLNCAAYIAGIISGVLNGASF
PAGVTAHHVAIGDGQRDKTVFLIKFRQDVLRREAALSA*
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mRNA from alignment at scaffold_11:398282..399754-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5715 ID=mRNA_5715|Name=jgi.p|Nanoce1779_2|590090|organism=Nannochloropsis oceanica|type=mRNA|length=1473bp|location=Sequence derived from alignment at scaffold_11:398282..399754- (Nannochloropsis oceanica)
CACGTGCCATATAATAAGTACTTCCCCGGAGGTTGTAAGAGCACCGATAT
AGTGATACCCCCAGCAAGTACGTTGCGTGCCATCAACAAATGACAGAGAA
AACTTCCTATTATGCCAGGGCCGCAAGGCTAATCTTGGGACGAAAGAAAA
AAAGCTAGCACCCCAGTAAGCAGCATCCAGCATCAGTTCGGCAATTTGGG
GTCAATGATGATGCACCGACACCGAGACCGAGACAAAGCCACTTCACATC
CCTCAAACACTGTCCACATCCATATGAGCTTGTTACAGATGACAGACGGC
AAACGAGGTACATCTTCGGGGGTGGGGGGCCCACGGGTGCTCAGTATTCT
CGATCGTCCTCTTGCTGCCAAGAAGGGGAGTGGAGGTGGTGGGAGTGGGG
GAGAAGTGAGTCTCAGTGCGTTCAGCTTCCTGTTTTCCGAAATGGTGCAG
TACTACCAGAGCCGCGTCCTGAGCATCGCAGACTTGGAGCGCAAGTAAGT
AATGAGGTGGACAGGCTCTGCGCGTGATCTCGAGGTGTGCGCGGCTCAAT
CCATTACAATTCTCTTCATCCATCGAGCATGATGCCCTTCAGCCATGACT
CAATCTCCTCTCCACTGTCAACGCCACGTCATCCGTCCCGTCACAGGTTG
GAAGAGGCTGGATATGGCGTGGGTCACCGGATGCTAGAGCTGCTGGCTCT
CCGAGAACGACAGTACAGGCGTGAAACCAAGCTGATAGGGGTGCTACAGT
TCGTGTCTTCGACAGTGTGGAAGGCCCTCTTTAACAAGGTGGCGGACTCG
CTCGAGCGGTCTACAGAAAACGAGGACGAGTACATGATACATGAGCGGGA
ACCAATTACCAATGCTTTTGTGTCGGCCCCAGCTGACATAAGTCAATTGA
ATTGTGCAGCTTACATTGCGGGCATCATCTCCGGCGTCCTGAACGGCGCA
TCATTCGTAAGTCTGCACTGGGCGGTAAACTAGTTGGGAAGGCCTCTGTG
CTTGGAGAAAGAGTTTGTCTGTATTGCCAGGATAATTCTGGCTTCGCAAA
TGCGGACAAAGGGCCTGGGGAGGACTATTTTACTACACACTGGAGGGCGT
ATGTATGTATCAGTTTCTTTCTTTCGGAGTCTTTCTTTTATGTGTTCTCA
TGGCGTACTTATAGCCTACAAGAAGCTGATTCGCCCATGTTCATCCCCCT
TCTCCTCTCACATGATCTCTCATTTCACAGCCTGCTGGGGTGACGGCCCA
TCACGTGGCGATTGGGGATGGGCAGCGAGATAAGACTGTATTTCTCATCA
AGTTTCGACAGGACGTTTTGCGGAGAGAAGCTGCGTTATCTGCTTGACAG
TGAATCGTCTGAGGCAGTGAAAGCCTCGTGATCGAAGTTTTAAAGGAAAG
AAAAAAGGCTTGTGCAGAGACTCGGAGATGTTGGCCGCGACAGGCCTAAT
AATTATCCGCTTTTTGGTTGAGA
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Coding sequence (CDS) from alignment at scaffold_11:398282..399754-

>mRNA_5715 ID=mRNA_5715|Name=jgi.p|Nanoce1779_2|590090|organism=Nannochloropsis oceanica|type=CDS|length=2151bp|location=Sequence derived from alignment at scaffold_11:398282..399754- (Nannochloropsis oceanica)
CCTGCTGGGGTGACGGCCCATCACGTGGCGATTGGGGATGGGCAGCGAGA
TAAGACTGTATTTCTCATCAAGTTTCGACAGGACGTTTTGCGGAGAGAAG
CTGCGTTATCTGCTTGAGTTGGAAGAGGCTGGATATGGCGTGGGTCACCG
GATGCTAGAGCTGCTGGCTCTCCGAGAACGACAGTACAGGCGTGAAACCA
AGCTGATAGGGGTGCTACAGTTCGTGTCTTCGACAGTGTGGAAGGCCCTC
TTTAACAAGGTGGCGGACTCGCTCGAGCGGTCTACAGAAAACGAGGACGA
GTACATGATACATGAGCGGGAACCAATTACCAATGCTTTTGTGTCGGCCC
CAGCTGACATAAGTCAATTGAATTGTGCAGCTTACATTGCGGGCATCATC
TCCGGCGTCCTGAACGGCGCATCATTCATGATGATGCACCGACACCGAGA
CCGAGACAAAGCCACTTCACATCCCTCAAACACTGTCCACATCCATATGA
GCTTGTTACAGATGACAGACGGCAAACGAGGTACATCTTCGGGGGTGGGG
GGCCCACGGGTGCTCAGTATTCTCGATCGTCCTCTTGCTGCCAAGAAGGG
GAGTGGAGGTGGTGGGAGTGGGGGAGAAGTGAGTCTCAGTGCGTTCAGCT
TCCTGTTTTCCGAAATGGTGCAGTACTACCAGAGCCGCGTCCTGAGCATC
GCAGACTTGGAGCGCAACCTGCTGGGGTGACGGCCCATCACGTGGCGATT
GGGGATGGGCAGCGAGATAAGACTGTATTTCTCATCAAGTTTCGACAGGA
CGTTTTGCGGAGAGAAGCTGCGTTATCTGCTTGAGTTGGAAGAGGCTGGA
TATGGCGTGGGTCACCGGATGCTAGAGCTGCTGGCTCTCCGAGAACGACA
GTACAGGCGTGAAACCAAGCTGATAGGGGTGCTACAGTTCGTGTCTTCGA
CAGTGTGGAAGGCCCTCTTTAACAAGGTGGCGGACTCGCTCGAGCGGTCT
ACAGAAAACGAGGACGAGTACATGATACATGAGCGGGAACCAATTACCAA
TGCTTTTGTGTCGGCCCCAGCTGACATAAGTCAATTGAATTGTGCAGCTT
ACATTGCGGGCATCATCTCCGGCGTCCTGAACGGCGCATCATTCATGATG
ATGCACCGACACCGAGACCGAGACAAAGCCACTTCACATCCCTCAAACAC
TGTCCACATCCATATGAGCTTGTTACAGATGACAGACGGCAAACGAGGTA
CATCTTCGGGGGTGGGGGGCCCACGGGTGCTCAGTATTCTCGATCGTCCT
CTTGCTGCCAAGAAGGGGAGTGGAGGTGGTGGGAGTGGGGGAGAAGTGAG
TCTCAGTGCGTTCAGCTTCCTGTTTTCCGAAATGGTGCAGTACTACCAGA
GCCGCGTCCTGAGCATCGCAGACTTGGAGCGCAACCTGCTGGGGTGACGG
CCCATCACGTGGCGATTGGGGATGGGCAGCGAGATAAGACTGTATTTCTC
ATCAAGTTTCGACAGGACGTTTTGCGGAGAGAAGCTGCGTTATCTGCTTG
AGTTGGAAGAGGCTGGATATGGCGTGGGTCACCGGATGCTAGAGCTGCTG
GCTCTCCGAGAACGACAGTACAGGCGTGAAACCAAGCTGATAGGGGTGCT
ACAGTTCGTGTCTTCGACAGTGTGGAAGGCCCTCTTTAACAAGGTGGCGG
ACTCGCTCGAGCGGTCTACAGAAAACGAGGACGAGTACATGATACATGAG
CGGGAACCAATTACCAATGCTTTTGTGTCGGCCCCAGCTGACATAAGTCA
ATTGAATTGTGCAGCTTACATTGCGGGCATCATCTCCGGCGTCCTGAACG
GCGCATCATTCATGATGATGCACCGACACCGAGACCGAGACAAAGCCACT
TCACATCCCTCAAACACTGTCCACATCCATATGAGCTTGTTACAGATGAC
AGACGGCAAACGAGGTACATCTTCGGGGGTGGGGGGCCCACGGGTGCTCA
GTATTCTCGATCGTCCTCTTGCTGCCAAGAAGGGGAGTGGAGGTGGTGGG
AGTGGGGGAGAAGTGAGTCTCAGTGCGTTCAGCTTCCTGTTTTCCGAAAT
GGTGCAGTACTACCAGAGCCGCGTCCTGAGCATCGCAGACTTGGAGCGCA
A
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Synonyms
Publications