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Properties
| Property Name | Value |
|---|
| TranscriptId | 590553 |
| Track | FilteredModels2 |
| ProteinId | 590467 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_11 | supercontig | scaffold_11:673962..676606 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5830 ID=mRNA_5830|Name=jgi.p|Nanoce1779_2|590467|organism=Nannochloropsis oceanica|type=mRNA|length=2032bp
ACAGAGTCAAGATGGTCTCGACGCTGCCACGACGACGAGGCATAGGCGTG
TTTTCGCTATGCTGCGTGTTGGCTATGGTGGTTCTCCCGCAACCAGCCCA
GGGGTCCACATATGAGGTCCAAGGCCACGTGGGCGGCAAACGGACGCTTG
TCCTCCTCGACACCTTCACCACCATCGAAACGCATTCGTTATTCTTCTCT
GGTTTGGCTGGACGTGGACACGAGCTTACCTATTTCCTAGCTAGCAGCCC
TGACGTCCTCCTTTCCAAATACGGGGAGCCACTCTACGATAATTTGATTT
TCTTCGCCCCCGGGACCAGCGAGTTCACCAGTCCCTCCTTGGATGGAGCG
GAGGGAATTGTTGCGTTTGTGGAGGGAGGTGGCAATGTACTTATGGCGGG
GGAGAAGGGGATGAGCGACTTAACGAGGGAAATCGCGGGGGAGTTTGGGG
TGGAATTTGAGAAGAAACGGAGCGTGGTCCAAGACCATTTCTCATATGCC
CCCGGGTTGGATGTGAGCGGACGGCATTGGGCGGTTGTGAGTGATGGTTT
GGTGAGGAATGAGAAGGTGTTGGGGAGGGACGCGGGGCGAAAAGGGGGGG
TTTCGCCCGTGGTTTTTAAGGGGGTGGGGGTGACGGTGGAATCGGAGAAT
GTCTTGGCATTCCCTATTTTGACTGGCGCGTCTTCGACCTACTCGGCCGT
TCCTAACAAGGAAATTATCTCTTCTACTGCAGCTTCATCCTTTCCGATGT
CGTTGGCGAATGCAGGGAAGGCATTGGGTTTGATCGTGGCTGTGCAGGCG
AGGAACAACGCCAGGGTGATTGTGTCAGGTTCCCTTGATTTCTTCTCGGA
TGCCTTTTTCGAGCATCAACTGGAAGGGACCGGGGGGAAGAAAGTAGGGA
ATGAGCTCGTGGCGCAGGAGATGAGCAAGTGGGGCCTGGGCGAGCGTGGG
ATATTAAGGGCGACCAATGTGACGCATCATCGCGCGGATGGGTCCAATCC
CGAGCACCTCCTAGCGACCATAGAGAAACCAGACCTGCCCTTTTCCCTCT
TTCCTGATCCGGAGCTTAACCGCCAATCGCTCGTGTATCGAATCAAGGAC
GATATTATCTACTCCTTGATCATTGAGGAGTACGATGAGGAGAAGGGTGG
GTGGGGCCCCTATCAGGCCGACGATGTCCAACTTGAATTTGTGATGCTTG
ACCCGCACGTGCGGACGTTCTTGGAATGCGAGAAGGGAACGGGGCGTTTC
TGGAAGTTATTCAAGGTCCCGGATACGTATGGAGTATTTAAGTTTAGGAT
TCTATACCGGCGGCCGGGGTTGAGTGTGTTGGCGGTGAATACGCAGGTGA
GCGTCAGGCCGTTCAATCACGATGAGTATGAGCGCTTTATCTTTAGCGCA
TTCCCTTATTACGCGAGCGCGTTTTCAATGATGGCCGGATTCTTGGTGTT
TGGGGTAGCGTTTTTGTACTCTAAACCGAAGAAGGCTGGTGGGGGGAAGA
GCACCAAAAAGGAGTAGGAGAGGGAGTAGAGCTGTATGCAGTGAACTCTG
TTCTTTCATGTGCCATGCGACTATGTTTTCGCATGTGGCAGGCATTTGGG
CGTTCCGGATGGAATGTCACTAAAGCGTGCCGGGGTTTGGAAGAGGGGGG
AAGAGAACAAAGACGGAGGAAAGGCAAGGCTGGAGGTTGGAGAGAAAGGG
ACCGATAGACCAAGAGGTCGTGTATCTGTGTGAAATGGAGGGAAGGATGA
GAGCGGAAGGGGGGTTGGGATGATAAAAGGAAAGACTGGGAGCGCAGGAG
CGGGGCCCCAGCCAGCTTATCCAGAACCATATTAAGCCCCAAAAACGGAA
AACTGCAGAGGAAGGGCATAATTGTGTCTGGCTTGAGGAGAAGAAGAGGG
TAGAATAGGATGGGTGACAACGACATCAGGAAGAAAGAAACAGAACGAAG
ACGACAGATCAAAAAATAAAACGGAGGCCCACGGGCGTGTCTATCAAAGA
AAGAATCAACGCAACGCAACGCAACAGTAGAT back to topprotein sequence of jgi.p|Nanoce1779_2|590467 >mRNA_5830-protein ID=mRNA_5830-protein|Name=jgi.p|Nanoce1779_2|590467|organism=Nannochloropsis oceanica|type=polypeptide|length=502bp
MVSTLPRRRGIGVFSLCCVLAMVVLPQPAQGSTYEVQGHVGGKRTLVLLD
TFTTIETHSLFFSGLAGRGHELTYFLASSPDVLLSKYGEPLYDNLIFFAP
GTSEFTSPSLDGAEGIVAFVEGGGNVLMAGEKGMSDLTREIAGEFGVEFE
KKRSVVQDHFSYAPGLDVSGRHWAVVSDGLVRNEKVLGRDAGRKGGVSPV
VFKGVGVTVESENVLAFPILTGASSTYSAVPNKEIISSTAASSFPMSLAN
AGKALGLIVAVQARNNARVIVSGSLDFFSDAFFEHQLEGTGGKKVGNELV
AQEMSKWGLGERGILRATNVTHHRADGSNPEHLLATIEKPDLPFSLFPDP
ELNRQSLVYRIKDDIIYSLIIEEYDEEKGGWGPYQADDVQLEFVMLDPHV
RTFLECEKGTGRFWKLFKVPDTYGVFKFRILYRRPGLSVLAVNTQVSVRP
FNHDEYERFIFSAFPYYASAFSMMAGFLVFGVAFLYSKPKKAGGGKSTKK
E* back to topmRNA from alignment at scaffold_11:673962..676606- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5830 ID=mRNA_5830|Name=jgi.p|Nanoce1779_2|590467|organism=Nannochloropsis oceanica|type=mRNA|length=2645bp|location=Sequence derived from alignment at scaffold_11:673962..676606- (Nannochloropsis oceanica)
ACAGAGTCAAGATGGTCTCGACGCTGCCACGACGACGAGGCATAGGCGTG
TTTTCGCTATGCTGCGTGTTGGCTATGGTGGTTCTCCCGCAACCAGCCCA
GGGGTCCACATATGAGGTCCAAGGTGCGTTTGAGCGAAGGGAGTAAGAGA
GGGTTGCGTGGTGAAGAAAGCACAAGCGAAATGTGGAGTGGACGCTGTCA
TGTGTAAAGCACGGCTGTTTGGTCGATATCTTCTTGTGTTTGATTCTGGA
TGAGTGCCAAAATGAGGAGCGGGGGAGCGAAAGGCAAGCGCCTGCTCTTG
CTGCCAGAAAGAACATGACAGGGCGCTGCGTGTGTGGGGCTACGTTGTAT
ACTTTTTGTAACATTTGAATCTAAGCCGCTTAGCTGCGTTGTGTTTGCCG
TCCATGTATATTTTATTCTCTGTTTTATGCCACCACTCCCGACAGACCCG
TCTTCCCTCCCTCTCTCCGTCCCTCCCCCCCTTTGCAACTTACAGGCCAC
GTGGGCGGCAAACGGACGCTTGTCCTCCTCGACACCTTCACCACCATCGA
AACGCATTCGTTATTCTTCTCTGGTTTGGCTGGACGTGGACACGAGCTTA
CCTATTTCCTAGCTAGCAGCCCTGACGTCCTCCTTTCCAAATACGGGGAG
CCACTCTACGATAATTTGATTTTCTTCGCCCCCGGGACCAGCGAGTTCAC
CAGTCCCTCCTTGGATGGAGCGGAGGGAATTGTTGCGTTTGTGGAGGGAG
GTGGCAATGTACTTATGGCGGGGGAGAAGGGGATGAGCGACTTAACGAGG
GAAATCGCGGGGGAGTTTGGGGTGGAATTTGAGAAGAAACGGAGCGTGGT
CCAAGACCATTTCTCATATGCCCCCGGGTTGGATGTGAGCGGACGGCATT
GGGCGGTTGTGAGTGATGGTTTGGTGAGGAATGAGAAGGTGTTGGGGAGG
GACGCGGGGCGAAAAGGGGGGGTTTCGCCCGTGGTTTTTAAGGGGGTGGG
GGTGACGGTGGAATCGGAGAATGTCTTGGCATTCCCTATTTTGACTGGCG
CGTCTTCGACCTACTCGGCCGTTCCTAACAAGGAAATTATCTCTTCTACT
GCAGCTTCATCCTTTCCGATGTCGTTGGCGAATGCAGGGAAGGCATTGGG
TTTGATCGTGGCTGTGCAGGCGAGGAACAACGCCAGGGTGATTGTGTCAG
GTTCCCTTGATTTCTTCTCGGATGCCTTTTTCGAGCATCAACTGGAAGGG
ACCGGGGGGAAGAAAGTAGGGAATGAGCTCGTGGCGCAGGAGATGAGCAA
GTGGGGCCTGGGCGAGCGTGGGATATTAAGGGCGACCAATGTGACGCATC
ATCGCGCGGATGGGTAGGTGCTCGGAAGGGGAGGGACGGAGGAGGGTAGG
GGGACGGAATATTGTTGTGTCTGGGGAAAGGTATGGGGATGGGAATATGT
ATGGTGCACCTTTTTGCTCGTGATGCGGTATATATGTTATTGCAATTATA
TCCAAATTAGTCATCCTTTCCCCTCTGATCCATCTCTTTCTTCCCCGTTC
ATCCATCCCTCCTACCCTCCTCCCACCCCCCCCCCTTCCTCCCCTTCCTC
CCAGGTCCAATCCCGAGCACCTCCTAGCGACCATAGAGAAACCAGACCTG
CCCTTTTCCCTCTTTCCTGATCCGGAGCTTAACCGCCAATCGCTCGTGTA
TCGAATCAAGGACGATATTATCTACTCCTTGATCATTGAGGAGTACGATG
AGGAGAAGGGTGGGTGGGGCCCCTATCAGGCCGACGATGTCCAACTTGAA
TTTGTGATGCTTGACCCGCACGTGCGGACGTTCTTGGAATGCGAGAAGGG
AACGGGGCGTTTCTGGAAGTTATTCAAGGTCCCGGATACGTATGGAGTAT
TTAAGTTTAGGATTCTATACCGGCGGCCGGGGTTGAGTGTGTTGGCGGTG
AATACGCAGGTGAGCGTCAGGCCGTTCAATCACGATGAGTATGAGCGCTT
TATCTTTAGCGCATTCCCTTATTACGCGAGCGCGTTTTCAATGATGGCCG
GATTCTTGGTGTTTGGGGTAGCGTTTTTGTACTCTAAACCGAAGAAGGCT
GGTGGGGGGAAGAGCACCAAAAAGGAGTAGGAGAGGGAGTAGAGCTGTAT
GCAGTGAACTCTGTTCTTTCATGTGCCATGCGACTATGTTTTCGCATGTG
GCAGGCATTTGGGCGTTCCGGATGGAATGTCACTAAAGCGTGCCGGGGTT
TGGAAGAGGGGGGAAGAGAACAAAGACGGAGGAAAGGCAAGGCTGGAGGT
TGGAGAGAAAGGGACCGATAGACCAAGAGGTCGTGTATCTGTGTGAAATG
GAGGGAAGGATGAGAGCGGAAGGGGGGTTGGGATGATAAAAGGAAAGACT
GGGAGCGCAGGAGCGGGGCCCCAGCCAGCTTATCCAGAACCATATTAAGC
CCCAAAAACGGAAAACTGCAGAGGAAGGGCATAATTGTGTCTGGCTTGAG
GAGAAGAAGAGGGTAGAATAGGATGGGTGACAACGACATCAGGAAGAAAG
AAACAGAACGAAGACGACAGATCAAAAAATAAAACGGAGGCCCACGGGCG
TGTCTATCAAAGAAAGAATCAACGCAACGCAACGCAACAGTAGAT back to topCoding sequence (CDS) from alignment at scaffold_11:673962..676606- >mRNA_5830 ID=mRNA_5830|Name=jgi.p|Nanoce1779_2|590467|organism=Nannochloropsis oceanica|type=CDS|length=4518bp|location=Sequence derived from alignment at scaffold_11:673962..676606- (Nannochloropsis oceanica)
GTCCAATCCCGAGCACCTCCTAGCGACCATAGAGAAACCAGACCTGCCCT
TTTCCCTCTTTCCTGATCCGGAGCTTAACCGCCAATCGCTCGTGTATCGA
ATCAAGGACGATATTATCTACTCCTTGATCATTGAGGAGTACGATGAGGA
GAAGGGTGGGTGGGGCCCCTATCAGGCCGACGATGTCCAACTTGAATTTG
TGATGCTTGACCCGCACGTGCGGACGTTCTTGGAATGCGAGAAGGGAACG
GGGCGTTTCTGGAAGTTATTCAAGGTCCCGGATACGTATGGAGTATTTAA
GTTTAGGATTCTATACCGGCGGCCGGGGTTGAGTGTGTTGGCGGTGAATA
CGCAGGTGAGCGTCAGGCCGTTCAATCACGATGAGTATGAGCGCTTTATC
TTTAGCGCATTCCCTTATTACGCGAGCGCGTTTTCAATGATGGCCGGATT
CTTGGTGTTTGGGGTAGCGTTTTTGTACTCTAAACCGAAGAAGGCTGGTG
GGGGGAAGAGCACCAAAAAGGAGTAGGCCACGTGGGCGGCAAACGGACGC
TTGTCCTCCTCGACACCTTCACCACCATCGAAACGCATTCGTTATTCTTC
TCTGGTTTGGCTGGACGTGGACACGAGCTTACCTATTTCCTAGCTAGCAG
CCCTGACGTCCTCCTTTCCAAATACGGGGAGCCACTCTACGATAATTTGA
TTTTCTTCGCCCCCGGGACCAGCGAGTTCACCAGTCCCTCCTTGGATGGA
GCGGAGGGAATTGTTGCGTTTGTGGAGGGAGGTGGCAATGTACTTATGGC
GGGGGAGAAGGGGATGAGCGACTTAACGAGGGAAATCGCGGGGGAGTTTG
GGGTGGAATTTGAGAAGAAACGGAGCGTGGTCCAAGACCATTTCTCATAT
GCCCCCGGGTTGGATGTGAGCGGACGGCATTGGGCGGTTGTGAGTGATGG
TTTGGTGAGGAATGAGAAGGTGTTGGGGAGGGACGCGGGGCGAAAAGGGG
GGGTTTCGCCCGTGGTTTTTAAGGGGGTGGGGGTGACGGTGGAATCGGAG
AATGTCTTGGCATTCCCTATTTTGACTGGCGCGTCTTCGACCTACTCGGC
CGTTCCTAACAAGGAAATTATCTCTTCTACTGCAGCTTCATCCTTTCCGA
TGTCGTTGGCGAATGCAGGGAAGGCATTGGGTTTGATCGTGGCTGTGCAG
GCGAGGAACAACGCCAGGGTGATTGTGTCAGGTTCCCTTGATTTCTTCTC
GGATGCCTTTTTCGAGCATCAACTGGAAGGGACCGGGGGGAAGAAAGTAG
GGAATGAGCTCGTGGCGCAGGAGATGAGCAAGTGGGGCCTGGGCGAGCGT
GGGATATTAAGGGCGACCAATGTGACGCATCATCGCGCGGATGGATGGTC
TCGACGCTGCCACGACGACGAGGCATAGGCGTGTTTTCGCTATGCTGCGT
GTTGGCTATGGTGGTTCTCCCGCAACCAGCCCAGGGGTCCACATATGAGG
TCCAAGGTCCAATCCCGAGCACCTCCTAGCGACCATAGAGAAACCAGACC
TGCCCTTTTCCCTCTTTCCTGATCCGGAGCTTAACCGCCAATCGCTCGTG
TATCGAATCAAGGACGATATTATCTACTCCTTGATCATTGAGGAGTACGA
TGAGGAGAAGGGTGGGTGGGGCCCCTATCAGGCCGACGATGTCCAACTTG
AATTTGTGATGCTTGACCCGCACGTGCGGACGTTCTTGGAATGCGAGAAG
GGAACGGGGCGTTTCTGGAAGTTATTCAAGGTCCCGGATACGTATGGAGT
ATTTAAGTTTAGGATTCTATACCGGCGGCCGGGGTTGAGTGTGTTGGCGG
TGAATACGCAGGTGAGCGTCAGGCCGTTCAATCACGATGAGTATGAGCGC
TTTATCTTTAGCGCATTCCCTTATTACGCGAGCGCGTTTTCAATGATGGC
CGGATTCTTGGTGTTTGGGGTAGCGTTTTTGTACTCTAAACCGAAGAAGG
CTGGTGGGGGGAAGAGCACCAAAAAGGAGTAGGCCACGTGGGCGGCAAAC
GGACGCTTGTCCTCCTCGACACCTTCACCACCATCGAAACGCATTCGTTA
TTCTTCTCTGGTTTGGCTGGACGTGGACACGAGCTTACCTATTTCCTAGC
TAGCAGCCCTGACGTCCTCCTTTCCAAATACGGGGAGCCACTCTACGATA
ATTTGATTTTCTTCGCCCCCGGGACCAGCGAGTTCACCAGTCCCTCCTTG
GATGGAGCGGAGGGAATTGTTGCGTTTGTGGAGGGAGGTGGCAATGTACT
TATGGCGGGGGAGAAGGGGATGAGCGACTTAACGAGGGAAATCGCGGGGG
AGTTTGGGGTGGAATTTGAGAAGAAACGGAGCGTGGTCCAAGACCATTTC
TCATATGCCCCCGGGTTGGATGTGAGCGGACGGCATTGGGCGGTTGTGAG
TGATGGTTTGGTGAGGAATGAGAAGGTGTTGGGGAGGGACGCGGGGCGAA
AAGGGGGGGTTTCGCCCGTGGTTTTTAAGGGGGTGGGGGTGACGGTGGAA
TCGGAGAATGTCTTGGCATTCCCTATTTTGACTGGCGCGTCTTCGACCTA
CTCGGCCGTTCCTAACAAGGAAATTATCTCTTCTACTGCAGCTTCATCCT
TTCCGATGTCGTTGGCGAATGCAGGGAAGGCATTGGGTTTGATCGTGGCT
GTGCAGGCGAGGAACAACGCCAGGGTGATTGTGTCAGGTTCCCTTGATTT
CTTCTCGGATGCCTTTTTCGAGCATCAACTGGAAGGGACCGGGGGGAAGA
AAGTAGGGAATGAGCTCGTGGCGCAGGAGATGAGCAAGTGGGGCCTGGGC
GAGCGTGGGATATTAAGGGCGACCAATGTGACGCATCATCGCGCGGATGG
ATGGTCTCGACGCTGCCACGACGACGAGGCATAGGCGTGTTTTCGCTATG
CTGCGTGTTGGCTATGGTGGTTCTCCCGCAACCAGCCCAGGGGTCCACAT
ATGAGGTCCAAGGTCCAATCCCGAGCACCTCCTAGCGACCATAGAGAAAC
CAGACCTGCCCTTTTCCCTCTTTCCTGATCCGGAGCTTAACCGCCAATCG
CTCGTGTATCGAATCAAGGACGATATTATCTACTCCTTGATCATTGAGGA
GTACGATGAGGAGAAGGGTGGGTGGGGCCCCTATCAGGCCGACGATGTCC
AACTTGAATTTGTGATGCTTGACCCGCACGTGCGGACGTTCTTGGAATGC
GAGAAGGGAACGGGGCGTTTCTGGAAGTTATTCAAGGTCCCGGATACGTA
TGGAGTATTTAAGTTTAGGATTCTATACCGGCGGCCGGGGTTGAGTGTGT
TGGCGGTGAATACGCAGGTGAGCGTCAGGCCGTTCAATCACGATGAGTAT
GAGCGCTTTATCTTTAGCGCATTCCCTTATTACGCGAGCGCGTTTTCAAT
GATGGCCGGATTCTTGGTGTTTGGGGTAGCGTTTTTGTACTCTAAACCGA
AGAAGGCTGGTGGGGGGAAGAGCACCAAAAAGGAGTAGGCCACGTGGGCG
GCAAACGGACGCTTGTCCTCCTCGACACCTTCACCACCATCGAAACGCAT
TCGTTATTCTTCTCTGGTTTGGCTGGACGTGGACACGAGCTTACCTATTT
CCTAGCTAGCAGCCCTGACGTCCTCCTTTCCAAATACGGGGAGCCACTCT
ACGATAATTTGATTTTCTTCGCCCCCGGGACCAGCGAGTTCACCAGTCCC
TCCTTGGATGGAGCGGAGGGAATTGTTGCGTTTGTGGAGGGAGGTGGCAA
TGTACTTATGGCGGGGGAGAAGGGGATGAGCGACTTAACGAGGGAAATCG
CGGGGGAGTTTGGGGTGGAATTTGAGAAGAAACGGAGCGTGGTCCAAGAC
CATTTCTCATATGCCCCCGGGTTGGATGTGAGCGGACGGCATTGGGCGGT
TGTGAGTGATGGTTTGGTGAGGAATGAGAAGGTGTTGGGGAGGGACGCGG
GGCGAAAAGGGGGGGTTTCGCCCGTGGTTTTTAAGGGGGTGGGGGTGACG
GTGGAATCGGAGAATGTCTTGGCATTCCCTATTTTGACTGGCGCGTCTTC
GACCTACTCGGCCGTTCCTAACAAGGAAATTATCTCTTCTACTGCAGCTT
CATCCTTTCCGATGTCGTTGGCGAATGCAGGGAAGGCATTGGGTTTGATC
GTGGCTGTGCAGGCGAGGAACAACGCCAGGGTGATTGTGTCAGGTTCCCT
TGATTTCTTCTCGGATGCCTTTTTCGAGCATCAACTGGAAGGGACCGGGG
GGAAGAAAGTAGGGAATGAGCTCGTGGCGCAGGAGATGAGCAAGTGGGGC
CTGGGCGAGCGTGGGATATTAAGGGCGACCAATGTGACGCATCATCGCGC
GGATGGATGGTCTCGACGCTGCCACGACGACGAGGCATAGGCGTGTTTTC
GCTATGCTGCGTGTTGGCTATGGTGGTTCTCCCGCAACCAGCCCAGGGGT
CCACATATGAGGTCCAAG back to top
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