jgi.p|Nanoce1779_2|590554, mRNA_5854 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|590554
Unique NamemRNA_5854
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1063
Alignment locationscaffold_11:734555..736428 -

Link to JBrowse

Properties
Property NameValue
TranscriptId590640
TrackFilteredModels2
ProteinId590554
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:734555..736428 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590554gene_5854Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|590554mRNA_5854-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5854CDS_5854Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5854 ID=mRNA_5854|Name=jgi.p|Nanoce1779_2|590554|organism=Nannochloropsis oceanica|type=mRNA|length=1063bp
ACAGGCAGGCAGCGGGACATCCACAACAGCAGCCTGTAAAATAGATAGGC
AGCCATGATAAGCGCAGGCCAGCAGCAAGACCACTATTCAGGGCAAATGG
ACGGGCATAACTCCATGACTTTGGATGAGCCCGTCTGGCATACAGTGAAA
CGAGACCTCATGCAGGTCGGTTCCAAGCTACAGGTGGTACTACTACCCAG
AGAAAACCAAGACGGCGTGCTCAAGAAACTCAAGGACTGGGACCTCTGGG
GCCCGCTCCTCGTTTGCCTGACCCTCTCTATTCTCCTCAGCATCACCGCG
CCGGAGGAACAAGGCGCCCTGGTCTTTGCCGCCGTGTTTTTTGTGGTGTG
GTTTGGTGCGGCTGTTGTCACTTTGAATGCCCAGCTCTTGGGTGGTACTA
TCTCCTTTTTCCAAAGCTTGTGCATCCTAGGTTACTGCGTCTTCCCCCTC
GACATTGCCGCGCTCGCTAATCTCTTGGTGGGTCTAGCTTTTGAGTCGGT
GATTGTCAAGGCCCTAATAGTCGCCCTGGGGTTCGCATGGGCCACACGAG
CCTCCGTCATCTTCATCGGTCAAGTCATCGCGCCCGAGCGGAAGGTGCTG
GCCCTCTTCCCGGTATTCTTTTTCTACACCTTCTTGGCATGGCTAGTGTT
GGTCCAATAAATCGTTACCCTTTCGTCAAAAAATACGACAAAAAAAAACA
CTTGAAGACGACAAAAAAGCACGAGGGAGAAGTTGTGTATGTTTAGCAGT
GTGGGAGGGAGGGAATGGACGAGGAAACGACAGATGAGCAAGGTTGTTCA
GTGGTTAATTTGGGAGGAAGAAAGGAAGGGAGGGGGGGCTGTAGGGTGTA
TTTGTGCGGTGGATGTATTAATGACCGCCTCCCTTGTGGTTCTATTTGTG
GTCATCGTTCCTCCTTCGATTTTGATGACGGTGACGACCGGGCGAAAAGC
GACAACCAATGGCAGGGACGGAATGGAATAGGGTGGTGACTCCGCGTCTC
TTGAACAATAAAAAAAGAAAAGAAATGAAGAAAAAAAAACCGATAGACCC
TGTTGAATAAAAA
back to top

protein sequence of jgi.p|Nanoce1779_2|590554

>mRNA_5854-protein ID=mRNA_5854-protein|Name=jgi.p|Nanoce1779_2|590554|organism=Nannochloropsis oceanica|type=polypeptide|length=202bp
MISAGQQQDHYSGQMDGHNSMTLDEPVWHTVKRDLMQVGSKLQVVLLPRE
NQDGVLKKLKDWDLWGPLLVCLTLSILLSITAPEEQGALVFAAVFFVVWF
GAAVVTLNAQLLGGTISFFQSLCILGYCVFPLDIAALANLLVGLAFESVI
VKALIVALGFAWATRASVIFIGQVIAPERKVLALFPVFFFYTFLAWLVLV
Q*
back to top

mRNA from alignment at scaffold_11:734555..736428-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5854 ID=mRNA_5854|Name=jgi.p|Nanoce1779_2|590554|organism=Nannochloropsis oceanica|type=mRNA|length=1874bp|location=Sequence derived from alignment at scaffold_11:734555..736428- (Nannochloropsis oceanica)
ACAGGCAGGCAGCGGGACATCCACAACAGCAGCCTGTAAAATAGATAGGC
AGCCATGATAAGCGCAGGCCAGCAGCAAGACCACTATTCAGGGCAAATGG
ACGGGCATAACTCCATGACTTTGGATGAGCCCGTCTGGCATACAGTGGTA
CGTTTGGGGGCGGCGGTAGCAGCTGTGGAAGGGAGAAGCAGGCGAGGAGA
TACGGGATTGTGTGTAGGTCATTTAGACCTGTTGTTTTGACGCTGTCGTT
TTTGCTGTCGGCAGGTTGAGTTGTGATGCATGAAGCAGAGGAAGCAAGGA
GGGAGGAGAGGAAGGCTTGTAGAGTGGTGATGATGGTGCGTTTCTGTATG
CCCCTTTGCTTTGCCCTGCTTACATGAGTCGCATAATTTGCACAAGAGGA
AATCTTGAGATGATGGATAAAGGGGACCTCCTGAAGGCTTCGAGGATTCG
AAATTACAGCTGTCAACTCACGACCCCCTTCCTTCCTCCCCCCTCCCCTT
TTTCTACCTTTTCGTTTCATTCCCCATGAAAAACGCAGAAACGAGACCTC
ATGCAGGTCGGTTCCAAGCTACAGGTGGTACTACTACCCAGAGAAAACCA
AGACGGCGTGCTCAAGAAACTCAAGGACTGTGCGTATGGAAGAGGGATTG
AGGGAGGGGAGAAGCCAGGCTACATTGTTGTTGACAGACGCTTGAGAAAT
GTGCGAGTAAAAGAGGATGATATACTGACCTGATTTCATGCGTATCCCCT
ACATGTCCAAACACGCTTTCATAGGGGACCTCTGGGGCCCGCTCCTCGTT
TGCCTGACCCTCTCTATTCTCCTCAGCATCACCGCGCCGGAGGAACAAGG
CGCCCTGGTCTTTGCCGCCGTGTTTTTTGTGGTGTGGTTTGGTGCGGCTG
TTGTCACTTTGAATGCCCAGCTCTTGGGTGGTACTATGTGAGTGCGTGTG
ATCGATTGTGCCTCCCTTCCCCGGCTCTCATATTTCCTTGGAGCCATGCC
TCCCATCCCTCATGACGTACTCCTCTTCGCCCGACTGAAATTTCCTCCTC
TTTCCTCTTTCCTCTTTCCTCCCTCCACCAGCTCCTTTTTCCAAAGCTTG
TGCATCCTAGGTTACTGCGTCTTCCCCCTCGACATTGCCGCGCTCGCTAA
TCTCTTGGTGGGTCTAGCTTTTGAGTCGGTGATTGTCAAGGCCCTAATAG
TCGCCCTGGGGTTCGCATGGGCCACACGAGGTACAGAAGGGAGGGAGAGG
AAAATTACATTTCTTTCATTGAGTATATTTTTAAAAAGTGGAAAAGGCAT
GAAACCTTTGACACCCATCAAACCCCCTCCCCCCCTTCCTCCCTCCCCCC
CCCCCCCCCAGCCTCCGTCATCTTCATCGGTCAAGTCATCGCGCCCGAGC
GGAAGGTGCTGGCCCTCTTCCCGGTATTCTTTTTCTACACCTTCTTGGCA
TGGCTAGTGTTGGTCCAATAAATCGTTACCCTTTCGTCAAAAAATACGAC
AAAAAAAAACACTTGAAGACGACAAAAAAGCACGAGGGAGAAGTTGTGTA
TGTTTAGCAGTGTGGGAGGGAGGGAATGGACGAGGAAACGACAGATGAGC
AAGGTTGTTCAGTGGTTAATTTGGGAGGAAGAAAGGAAGGGAGGGGGGGC
TGTAGGGTGTATTTGTGCGGTGGATGTATTAATGACCGCCTCCCTTGTGG
TTCTATTTGTGGTCATCGTTCCTCCTTCGATTTTGATGACGGTGACGACC
GGGCGAAAAGCGACAACCAATGGCAGGGACGGAATGGAATAGGGTGGTGA
CTCCGCGTCTCTTGAACAATAAAAAAAGAAAAGAAATGAAGAAAAAAAAA
CCGATAGACCCTGTTGAATAAAAA
back to top

Coding sequence (CDS) from alignment at scaffold_11:734555..736428-

>mRNA_5854 ID=mRNA_5854|Name=jgi.p|Nanoce1779_2|590554|organism=Nannochloropsis oceanica|type=CDS|length=3030bp|location=Sequence derived from alignment at scaffold_11:734555..736428- (Nannochloropsis oceanica)
CCTCCGTCATCTTCATCGGTCAAGTCATCGCGCCCGAGCGGAAGGTGCTG
GCCCTCTTCCCGGTATTCTTTTTCTACACCTTCTTGGCATGGCTAGTGTT
GGTCCAATAACTCCTTTTTCCAAAGCTTGTGCATCCTAGGTTACTGCGTC
TTCCCCCTCGACATTGCCGCGCTCGCTAATCTCTTGGTGGGTCTAGCTTT
TGAGTCGGTGATTGTCAAGGCCCTAATAGTCGCCCTGGGGTTCGCATGGG
CCACACGAGGGGACCTCTGGGGCCCGCTCCTCGTTTGCCTGACCCTCTCT
ATTCTCCTCAGCATCACCGCGCCGGAGGAACAAGGCGCCCTGGTCTTTGC
CGCCGTGTTTTTTGTGGTGTGGTTTGGTGCGGCTGTTGTCACTTTGAATG
CCCAGCTCTTGGGTGGTACTATAAACGAGACCTCATGCAGGTCGGTTCCA
AGCTACAGGTGGTACTACTACCCAGAGAAAACCAAGACGGCGTGCTCAAG
AAACTCAAGGACTATGATAAGCGCAGGCCAGCAGCAAGACCACTATTCAG
GGCAAATGGACGGGCATAACTCCATGACTTTGGATGAGCCCGTCTGGCAT
ACAGTGCCTCCGTCATCTTCATCGGTCAAGTCATCGCGCCCGAGCGGAAG
GTGCTGGCCCTCTTCCCGGTATTCTTTTTCTACACCTTCTTGGCATGGCT
AGTGTTGGTCCAATAACTCCTTTTTCCAAAGCTTGTGCATCCTAGGTTAC
TGCGTCTTCCCCCTCGACATTGCCGCGCTCGCTAATCTCTTGGTGGGTCT
AGCTTTTGAGTCGGTGATTGTCAAGGCCCTAATAGTCGCCCTGGGGTTCG
CATGGGCCACACGAGGGGACCTCTGGGGCCCGCTCCTCGTTTGCCTGACC
CTCTCTATTCTCCTCAGCATCACCGCGCCGGAGGAACAAGGCGCCCTGGT
CTTTGCCGCCGTGTTTTTTGTGGTGTGGTTTGGTGCGGCTGTTGTCACTT
TGAATGCCCAGCTCTTGGGTGGTACTATAAACGAGACCTCATGCAGGTCG
GTTCCAAGCTACAGGTGGTACTACTACCCAGAGAAAACCAAGACGGCGTG
CTCAAGAAACTCAAGGACTATGATAAGCGCAGGCCAGCAGCAAGACCACT
ATTCAGGGCAAATGGACGGGCATAACTCCATGACTTTGGATGAGCCCGTC
TGGCATACAGTGCCTCCGTCATCTTCATCGGTCAAGTCATCGCGCCCGAG
CGGAAGGTGCTGGCCCTCTTCCCGGTATTCTTTTTCTACACCTTCTTGGC
ATGGCTAGTGTTGGTCCAATAACTCCTTTTTCCAAAGCTTGTGCATCCTA
GGTTACTGCGTCTTCCCCCTCGACATTGCCGCGCTCGCTAATCTCTTGGT
GGGTCTAGCTTTTGAGTCGGTGATTGTCAAGGCCCTAATAGTCGCCCTGG
GGTTCGCATGGGCCACACGAGGGGACCTCTGGGGCCCGCTCCTCGTTTGC
CTGACCCTCTCTATTCTCCTCAGCATCACCGCGCCGGAGGAACAAGGCGC
CCTGGTCTTTGCCGCCGTGTTTTTTGTGGTGTGGTTTGGTGCGGCTGTTG
TCACTTTGAATGCCCAGCTCTTGGGTGGTACTATAAACGAGACCTCATGC
AGGTCGGTTCCAAGCTACAGGTGGTACTACTACCCAGAGAAAACCAAGAC
GGCGTGCTCAAGAAACTCAAGGACTATGATAAGCGCAGGCCAGCAGCAAG
ACCACTATTCAGGGCAAATGGACGGGCATAACTCCATGACTTTGGATGAG
CCCGTCTGGCATACAGTGCCTCCGTCATCTTCATCGGTCAAGTCATCGCG
CCCGAGCGGAAGGTGCTGGCCCTCTTCCCGGTATTCTTTTTCTACACCTT
CTTGGCATGGCTAGTGTTGGTCCAATAACTCCTTTTTCCAAAGCTTGTGC
ATCCTAGGTTACTGCGTCTTCCCCCTCGACATTGCCGCGCTCGCTAATCT
CTTGGTGGGTCTAGCTTTTGAGTCGGTGATTGTCAAGGCCCTAATAGTCG
CCCTGGGGTTCGCATGGGCCACACGAGGGGACCTCTGGGGCCCGCTCCTC
GTTTGCCTGACCCTCTCTATTCTCCTCAGCATCACCGCGCCGGAGGAACA
AGGCGCCCTGGTCTTTGCCGCCGTGTTTTTTGTGGTGTGGTTTGGTGCGG
CTGTTGTCACTTTGAATGCCCAGCTCTTGGGTGGTACTATAAACGAGACC
TCATGCAGGTCGGTTCCAAGCTACAGGTGGTACTACTACCCAGAGAAAAC
CAAGACGGCGTGCTCAAGAAACTCAAGGACTATGATAAGCGCAGGCCAGC
AGCAAGACCACTATTCAGGGCAAATGGACGGGCATAACTCCATGACTTTG
GATGAGCCCGTCTGGCATACAGTGCCTCCGTCATCTTCATCGGTCAAGTC
ATCGCGCCCGAGCGGAAGGTGCTGGCCCTCTTCCCGGTATTCTTTTTCTA
CACCTTCTTGGCATGGCTAGTGTTGGTCCAATAACTCCTTTTTCCAAAGC
TTGTGCATCCTAGGTTACTGCGTCTTCCCCCTCGACATTGCCGCGCTCGC
TAATCTCTTGGTGGGTCTAGCTTTTGAGTCGGTGATTGTCAAGGCCCTAA
TAGTCGCCCTGGGGTTCGCATGGGCCACACGAGGGGACCTCTGGGGCCCG
CTCCTCGTTTGCCTGACCCTCTCTATTCTCCTCAGCATCACCGCGCCGGA
GGAACAAGGCGCCCTGGTCTTTGCCGCCGTGTTTTTTGTGGTGTGGTTTG
GTGCGGCTGTTGTCACTTTGAATGCCCAGCTCTTGGGTGGTACTATAAAC
GAGACCTCATGCAGGTCGGTTCCAAGCTACAGGTGGTACTACTACCCAGA
GAAAACCAAGACGGCGTGCTCAAGAAACTCAAGGACTATGATAAGCGCAG
GCCAGCAGCAAGACCACTATTCAGGGCAAATGGACGGGCATAACTCCATG
ACTTTGGATGAGCCCGTCTGGCATACAGTG
back to top
Synonyms
Publications