jgi.p|Nanoce1779_2|639330, mRNA_5680 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|639330
Unique Name	mRNA_5680
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	786
Alignment location	scaffold_11:309331..310476 +

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Properties


Property Name	Value
TranscriptId	639416
Track	FilteredModels2
ProteinId	639330

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_11	supercontig	scaffold_11:309331..310476 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|639330	gene_5680	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|639330	mRNA_5680-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5680	CDS_5680	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_11:309331..310476+
coding sequence from alignment at scaffold_11:309331..310476+

mRNA sequence

>mRNA_5680 ID=mRNA_5680|Name=jgi.p|Nanoce1779_2|639330|organism=Nannochloropsis oceanica|type=mRNA|length=786bp
ATGAAGTCTGAACCCGCGTCACCGGAATACTCGCTACTGAAACAAAGCCA
GGTCTTGAGCGCCGCCACGGGGAGGCCAACTTCTCTGGCCGATGCCTTTC
CCTCAGGAGGGAAGAAGACGATCGTGGCATTTTTTACGCATTGGGGAGAC
TTTAATAGCTTCGAATACGCCCAAAAGATTCTTCATAACCTCCCTCAGCT
GGACCGCGCGGGCGTGAACGTTGTCGCTGTCGGGATCGGTTCTGTGGCCT
CGGCGCAAGAGTTCGCGACATTGGTGGGGGGCTTTCCCCTAGATCGTCTG
TATTGCGACCCGTCCGCCGCAGCCTACGGTCAATTCGGCTTCTCCCGTGG
CTTTGCCGCCGACCTTCCCGTCAATCCTTATTTGAAACTCCTGCCAATGC
TCGCTGGCATCGGCTCCCCAGGCACTCTCCAAGCGGTGTTGCGTGGGTAC
ATCGGAGATAAAGCCGCGGATGCCTCTTGGACGTCCAATTACTTGAAGGG
AAGAAGCCAGGGAGGACAGGGTTTGGTCGACAAGAGTGCGTTTGACGTGC
TGGGGACAGAGGGGGCCCGGCCTTTCGAAGTGGCGACGGTGAGATTGCAG
AACATGATATCGATAATCCCGAACTGGCAACGGCTTGCTCCTGCAGATAA
ATCCTTGATCACGCAGCAGGGGGGAAGCTTGGTGTTTGAGGGCAAAATGT
TAACCAAGATTTATAGAGATAAGGGCATCTTAACGTACACGGACATGGAC
GATTTGTTGAGAACGGTGGGGGTGGGAGGGAGTTGA

protein sequence of jgi.p|Nanoce1779_2|639330

>mRNA_5680-protein ID=mRNA_5680-protein|Name=jgi.p|Nanoce1779_2|639330|organism=Nannochloropsis oceanica|type=polypeptide|length=262bp
MKSEPASPEYSLLKQSQVLSAATGRPTSLADAFPSGGKKTIVAFFTHWGD
FNSFEYAQKILHNLPQLDRAGVNVVAVGIGSVASAQEFATLVGGFPLDRL
YCDPSAAAYGQFGFSRGFAADLPVNPYLKLLPMLAGIGSPGTLQAVLRGY
IGDKAADASWTSNYLKGRSQGGQGLVDKSAFDVLGTEGARPFEVATVRLQ
NMISIIPNWQRLAPADKSLITQQGGSLVFEGKMLTKIYRDKGILTYTDMD
DLLRTVGVGGS*

mRNA from alignment at scaffold_11:309331..310476+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5680 ID=mRNA_5680|Name=jgi.p|Nanoce1779_2|639330|organism=Nannochloropsis oceanica|type=mRNA|length=1146bp|location=Sequence derived from alignment at scaffold_11:309331..310476+ (Nannochloropsis oceanica)
ATGAAGTCTGAACCCGCGTCACCGGAATACTCGCTACTGAAACAAAGCCA
GGTCTTGAGCGCCGCCACGGGGAGGCCAACTTCTCTGGCCGATGCCTTTC
CCTCAGGAGGGAAGAAGACGATCGTGGCATTTTTTACGCATTGGGGAGAC
TTTAATAGGTGCGTATACGATGTGGGGAGAGGAAGAGAAAGAAAAAGGAT
GGGTCTTTTAATTAAACTGAATCAGAAATAAGGTGCGTGGTGAATCAGCT
CATTTTACATTCGCACATCATTTCATCTCTCGTTCATCTCTCGCTCTTGG
ATTTCCTCCGCCCCTTTATCTCTCCCTTTATTCAATCCCTCCTTTTCAAT
ATGTTCAGCTTCGAATACGCCCAAAAGATTCTTCATAACCTCCCTCAGCT
GGACCGCGCGGGCGTGAACGTTGTCGCTGTCGGGATCGGTTCTGTGGCCT
CGGCGCAAGAGTTCGCGACATTGGTGGGGGGCTTTCCCCTAGGTACGTGA
CTGCCTTGCTTCGTTGAAGCAGAAGCCTGTTTAATTAGTTTGAAAATCAT
TTTCCCTTTTTACCCTTCGGTGCTGCTGCTGCTGTACTGGAGATCTCTTG
CCCAAGCACCAAATACATTATTAAAATTTTGACCCCTCGCCCAAAAAAAC
AGATCGTCTGTATTGCGACCCGTCCGCCGCAGCCTACGGTCAATTCGGCT
TCTCCCGTGGCTTTGCCGCCGACCTTCCCGTCAATCCTTATTTGAAACTC
CTGCCAATGCTCGCTGGCATCGGCTCCCCAGGCACTCTCCAAGCGGTGTT
GCGTGGGTACATCGGAGATAAAGCCGCGGATGCCTCTTGGACGTCCAATT
ACTTGAAGGGAAGAAGCCAGGGAGGACAGGGTTTGGTCGACAAGAGTGCG
TTTGACGTGCTGGGGACAGAGGGGGCCCGGCCTTTCGAAGTGGCGACGGT
GAGATTGCAGAACATGATATCGATAATCCCGAACTGGCAACGGCTTGCTC
CTGCAGATAAATCCTTGATCACGCAGCAGGGGGGAAGCTTGGTGTTTGAG
GGCAAAATGTTAACCAAGATTTATAGAGATAAGGGCATCTTAACGTACAC
GGACATGGACGATTTGTTGAGAACGGTGGGGGTGGGAGGGAGTTGA

Coding sequence (CDS) from alignment at scaffold_11:309331..310476+

>mRNA_5680 ID=mRNA_5680|Name=jgi.p|Nanoce1779_2|639330|organism=Nannochloropsis oceanica|type=CDS|length=2358bp|location=Sequence derived from alignment at scaffold_11:309331..310476+ (Nannochloropsis oceanica)
ATGAAGTCTGAACCCGCGTCACCGGAATACTCGCTACTGAAACAAAGCCA
GGTCTTGAGCGCCGCCACGGGGAGGCCAACTTCTCTGGCCGATGCCTTTC
CCTCAGGAGGGAAGAAGACGATCGTGGCATTTTTTACGCATTGGGGAGAC
TTTAATAGCTTCGAATACGCCCAAAAGATTCTTCATAACCTCCCTCAGCT
GGACCGCGCGGGCGTGAACGTTGTCGCTGTCGGGATCGGTTCTGTGGCCT
CGGCGCAAGAGTTCGCGACATTGGTGGGGGGCTTTCCCCTAGATCGTCTG
TATTGCGACCCGTCCGCCGCAGCCTACGGTCAATTCGGCTTCTCCCGTGG
CTTTGCCGCCGACCTTCCCGTCAATCCTTATTTGAAACTCCTGCCAATGC
TCGCTGGCATCGGCTCCCCAGGCACTCTCCAAGCGGTGTTGCGTGGGTAC
ATCGGAGATAAAGCCGCGGATGCCTCTTGGACGTCCAATTACTTGAAGGG
AAGAAGCCAGGGAGGACAGGGTTTGGTCGACAAGAGTGCGTTTGACGTGC
TGGGGACAGAGGGGGCCCGGCCTTTCGAAGTGGCGACGGTGAGATTGCAG
AACATGATATCGATAATCCCGAACTGGCAACGGCTTGCTCCTGCAGATAA
ATCCTTGATCACGCAGCAGGGGGGAAGCTTGGTGTTTGAGGGCAAAATGT
TAACCAAGATTTATAGAGATAAGGGCATCTTAACGTACACGGACATGGAC
GATTTGTTGAGAACGGTGGGGGTGGGAGGGAGTTGAATGAAGTCTGAACC
CGCGTCACCGGAATACTCGCTACTGAAACAAAGCCAGGTCTTGAGCGCCG
CCACGGGGAGGCCAACTTCTCTGGCCGATGCCTTTCCCTCAGGAGGGAAG
AAGACGATCGTGGCATTTTTTACGCATTGGGGAGACTTTAATAGCTTCGA
ATACGCCCAAAAGATTCTTCATAACCTCCCTCAGCTGGACCGCGCGGGCG
TGAACGTTGTCGCTGTCGGGATCGGTTCTGTGGCCTCGGCGCAAGAGTTC
GCGACATTGGTGGGGGGCTTTCCCCTAGATCGTCTGTATTGCGACCCGTC
CGCCGCAGCCTACGGTCAATTCGGCTTCTCCCGTGGCTTTGCCGCCGACC
TTCCCGTCAATCCTTATTTGAAACTCCTGCCAATGCTCGCTGGCATCGGC
TCCCCAGGCACTCTCCAAGCGGTGTTGCGTGGGTACATCGGAGATAAAGC
CGCGGATGCCTCTTGGACGTCCAATTACTTGAAGGGAAGAAGCCAGGGAG
GACAGGGTTTGGTCGACAAGAGTGCGTTTGACGTGCTGGGGACAGAGGGG
GCCCGGCCTTTCGAAGTGGCGACGGTGAGATTGCAGAACATGATATCGAT
AATCCCGAACTGGCAACGGCTTGCTCCTGCAGATAAATCCTTGATCACGC
AGCAGGGGGGAAGCTTGGTGTTTGAGGGCAAAATGTTAACCAAGATTTAT
AGAGATAAGGGCATCTTAACGTACACGGACATGGACGATTTGTTGAGAAC
GGTGGGGGTGGGAGGGAGTTGAATGAAGTCTGAACCCGCGTCACCGGAAT
ACTCGCTACTGAAACAAAGCCAGGTCTTGAGCGCCGCCACGGGGAGGCCA
ACTTCTCTGGCCGATGCCTTTCCCTCAGGAGGGAAGAAGACGATCGTGGC
ATTTTTTACGCATTGGGGAGACTTTAATAGCTTCGAATACGCCCAAAAGA
TTCTTCATAACCTCCCTCAGCTGGACCGCGCGGGCGTGAACGTTGTCGCT
GTCGGGATCGGTTCTGTGGCCTCGGCGCAAGAGTTCGCGACATTGGTGGG
GGGCTTTCCCCTAGATCGTCTGTATTGCGACCCGTCCGCCGCAGCCTACG
GTCAATTCGGCTTCTCCCGTGGCTTTGCCGCCGACCTTCCCGTCAATCCT
TATTTGAAACTCCTGCCAATGCTCGCTGGCATCGGCTCCCCAGGCACTCT
CCAAGCGGTGTTGCGTGGGTACATCGGAGATAAAGCCGCGGATGCCTCTT
GGACGTCCAATTACTTGAAGGGAAGAAGCCAGGGAGGACAGGGTTTGGTC
GACAAGAGTGCGTTTGACGTGCTGGGGACAGAGGGGGCCCGGCCTTTCGA
AGTGGCGACGGTGAGATTGCAGAACATGATATCGATAATCCCGAACTGGC
AACGGCTTGCTCCTGCAGATAAATCCTTGATCACGCAGCAGGGGGGAAGC
TTGGTGTTTGAGGGCAAAATGTTAACCAAGATTTATAGAGATAAGGGCAT
CTTAACGTACACGGACATGGACGATTTGTTGAGAACGGTGGGGGTGGGAG
GGAGTTGA

Synonyms

Publications