jgi.p|Nanoce1779_2|69746, mRNA_5533 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|69746
Unique Name	mRNA_5533
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1410
Alignment location	scaffold_13:650545..651954 +

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Properties


Property Name	Value
TranscriptId	69832
Track	FilteredModels2
ProteinId	69746

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_13	supercontig	scaffold_13:650545..651954 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|69746	gene_5533	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|69746	mRNA_5533-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5533	CDS_5533	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_13:650545..651954+
coding sequence from alignment at scaffold_13:650545..651954+

mRNA sequence

>mRNA_5533 ID=mRNA_5533|Name=jgi.p|Nanoce1779_2|69746|organism=Nannochloropsis oceanica|type=mRNA|length=1410bp
GTTAACCCGACAGATGGACTCCCGGGCTGCTTCCTCCTCCTTCTCCTCCT
CTTCCTCCATCTCCTCCCCCTTCTCCTCCCCCAAACACATACGGTAAGCT
TTTCTTCGATGATTTGCCAGGGCCAGAGGGAAAGGCTTCTTCTCTTGGCC
TCGGTGCTCTCCCACCAAGGTAAGCCCTTTTCCACCTCCTCACCCTCCCT
CCCTCCCTCCTTCTCCCAGATACTTCGACACTGGTGCCATGTCGACGGAA
GGCCGACCCTTCGTGACCGCCTATGCCGACTACGTCACCTTCCGCGCCTT
GCATTTTGGCCCCGGCTACCCGGAAGTAGGGCGGGAAGTCGGGGCAGCCG
TGGAAAGGGAGGAAGTAGGGGATGACACAGAAGACGCAGTTGGAGCAGCT
GCTGCAGCGGCAGGAGCAGCAGCAGCAGCGGCGGCGATGGCGGAGGGTAG
GGTGGCCCCGCCACCAGCCGTGTGGAGCGCGGGAGATTTTGACCTGTTTC
TGCGGCAGGTGGAGGACGTATGGGAGAGGGCATGGAGAGTACGGCTCGGA
ACAAAGGAGGAGGTGAGTGAATTGACCTGTGCGTGTGTGGAAGCGGTGTA
CTTTGACCTGCAGCAGGTGTTGGAGTGCCTTGCGGGGCATTTGAAGGTGG
TCTTGAGGAAAGTTGGGAGCGAGGAGGGGGTGGGGAGGGTGACAAAGGCG
GTGGAGGTGTATGAGAGGGGGGTGGAGGTGTTGAACGAGTATGTGGCAAG
GCACAAGGACTTGGTGGAGGGGCAGGGGGTGGTGATGGTGCCCATGGCGG
TGGTGGCTTTGGGGACGCCGCCCCGAGTGCCGTCTTTAGAGATGGTCGGA
CCCGGGGAGGAGGAGGAGGAGGGAAGGGAAGAGGAGGAGGGAAGGGAGGG
AGAGGGGAAGGGGAAGGAGCTGGGAGAGAAGACGGGAATGGAGAAGAAAG
ATTGGGATTTGAATGTAAAGAAGAAGAACAGAACAACAAAAAAGGTGGAG
AGAGAGGAGGAGGAGGAGGAGGAGAAGGGTGAGGAGGAGGAGGCTGTCAA
AGCTGTTAATAATAAGAAAAAGAACAAGAATATGTCAAATTCTGGGAAGA
AGAAGAAGAAGAAGAGCTGGAAGCTCTCCACTGCCGAGCGGCCAGCGGTA
AGAGTGGGGCCGACGAAGGGGAAAAAACGGAAGAAGCAGAAGATGGAGTA
GGAGTAGGCCGATGAAGTCATCAACGGTCATGATAGGATGGTAAACGGGG
AAGGAGGGACTAAAGAAGCCTTTAGAGACGTAGAGAAGGCAGTGCAGGTA
GTGTACATAGTCGGACGCAAAAATAATACTAGAGCAATAGTGGCCAGATT
TAAGCCCTCCACAGCACAAAGTGAACCTACAATTTAACCTAGGCGCGCTC
ATCATCTTCC

protein sequence of jgi.p|Nanoce1779_2|69746

>mRNA_5533-protein ID=mRNA_5533-protein|Name=jgi.p|Nanoce1779_2|69746|organism=Nannochloropsis oceanica|type=polypeptide|length=321bp
MSTEGRPFVTAYADYVTFRALHFGPGYPEVGREVGAAVEREEVGDDTEDA
VGAAAAAAGAAAAAAAMAEGRVAPPPAVWSAGDFDLFLRQVEDVWERAWR
VRLGTKEEVSELTCACVEAVYFDLQQVLECLAGHLKVVLRKVGSEEGVGR
VTKAVEVYERGVEVLNEYVARHKDLVEGQGVVMVPMAVVALGTPPRVPSL
EMVGPGEEEEEGREEEEGREGEGKGKELGEKTGMEKKDWDLNVKKKNRTT
KKVEREEEEEEEKGEEEEAVKAVNNKKKNKNMSNSGKKKKKKSWKLSTAE
RPAVRVGPTKGKKRKKQKME*

mRNA from alignment at scaffold_13:650545..651954+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5533 ID=mRNA_5533|Name=jgi.p|Nanoce1779_2|69746|organism=Nannochloropsis oceanica|type=mRNA|length=1410bp|location=Sequence derived from alignment at scaffold_13:650545..651954+ (Nannochloropsis oceanica)
GTTAACCCGACAGATGGACTCCCGGGCTGCTTCCTCCTCCTTCTCCTCCT
CTTCCTCCATCTCCTCCCCCTTCTCCTCCCCCAAACACATACGGTAAGCT
TTTCTTCGATGATTTGCCAGGGCCAGAGGGAAAGGCTTCTTCTCTTGGCC
TCGGTGCTCTCCCACCAAGGTAAGCCCTTTTCCACCTCCTCACCCTCCCT
CCCTCCCTCCTTCTCCCAGATACTTCGACACTGGTGCCATGTCGACGGAA
GGCCGACCCTTCGTGACCGCCTATGCCGACTACGTCACCTTCCGCGCCTT
GCATTTTGGCCCCGGCTACCCGGAAGTAGGGCGGGAAGTCGGGGCAGCCG
TGGAAAGGGAGGAAGTAGGGGATGACACAGAAGACGCAGTTGGAGCAGCT
GCTGCAGCGGCAGGAGCAGCAGCAGCAGCGGCGGCGATGGCGGAGGGTAG
GGTGGCCCCGCCACCAGCCGTGTGGAGCGCGGGAGATTTTGACCTGTTTC
TGCGGCAGGTGGAGGACGTATGGGAGAGGGCATGGAGAGTACGGCTCGGA
ACAAAGGAGGAGGTGAGTGAATTGACCTGTGCGTGTGTGGAAGCGGTGTA
CTTTGACCTGCAGCAGGTGTTGGAGTGCCTTGCGGGGCATTTGAAGGTGG
TCTTGAGGAAAGTTGGGAGCGAGGAGGGGGTGGGGAGGGTGACAAAGGCG
GTGGAGGTGTATGAGAGGGGGGTGGAGGTGTTGAACGAGTATGTGGCAAG
GCACAAGGACTTGGTGGAGGGGCAGGGGGTGGTGATGGTGCCCATGGCGG
TGGTGGCTTTGGGGACGCCGCCCCGAGTGCCGTCTTTAGAGATGGTCGGA
CCCGGGGAGGAGGAGGAGGAGGGAAGGGAAGAGGAGGAGGGAAGGGAGGG
AGAGGGGAAGGGGAAGGAGCTGGGAGAGAAGACGGGAATGGAGAAGAAAG
ATTGGGATTTGAATGTAAAGAAGAAGAACAGAACAACAAAAAAGGTGGAG
AGAGAGGAGGAGGAGGAGGAGGAGAAGGGTGAGGAGGAGGAGGCTGTCAA
AGCTGTTAATAATAAGAAAAAGAACAAGAATATGTCAAATTCTGGGAAGA
AGAAGAAGAAGAAGAGCTGGAAGCTCTCCACTGCCGAGCGGCCAGCGGTA
AGAGTGGGGCCGACGAAGGGGAAAAAACGGAAGAAGCAGAAGATGGAGTA
GGAGTAGGCCGATGAAGTCATCAACGGTCATGATAGGATGGTAAACGGGG
AAGGAGGGACTAAAGAAGCCTTTAGAGACGTAGAGAAGGCAGTGCAGGTA
GTGTACATAGTCGGACGCAAAAATAATACTAGAGCAATAGTGGCCAGATT
TAAGCCCTCCACAGCACAAAGTGAACCTACAATTTAACCTAGGCGCGCTC
ATCATCTTCC

Coding sequence (CDS) from alignment at scaffold_13:650545..651954+

>mRNA_5533 ID=mRNA_5533|Name=jgi.p|Nanoce1779_2|69746|organism=Nannochloropsis oceanica|type=CDS|length=963bp|location=Sequence derived from alignment at scaffold_13:650545..651954+ (Nannochloropsis oceanica)
ATGTCGACGGAAGGCCGACCCTTCGTGACCGCCTATGCCGACTACGTCAC
CTTCCGCGCCTTGCATTTTGGCCCCGGCTACCCGGAAGTAGGGCGGGAAG
TCGGGGCAGCCGTGGAAAGGGAGGAAGTAGGGGATGACACAGAAGACGCA
GTTGGAGCAGCTGCTGCAGCGGCAGGAGCAGCAGCAGCAGCGGCGGCGAT
GGCGGAGGGTAGGGTGGCCCCGCCACCAGCCGTGTGGAGCGCGGGAGATT
TTGACCTGTTTCTGCGGCAGGTGGAGGACGTATGGGAGAGGGCATGGAGA
GTACGGCTCGGAACAAAGGAGGAGGTGAGTGAATTGACCTGTGCGTGTGT
GGAAGCGGTGTACTTTGACCTGCAGCAGGTGTTGGAGTGCCTTGCGGGGC
ATTTGAAGGTGGTCTTGAGGAAAGTTGGGAGCGAGGAGGGGGTGGGGAGG
GTGACAAAGGCGGTGGAGGTGTATGAGAGGGGGGTGGAGGTGTTGAACGA
GTATGTGGCAAGGCACAAGGACTTGGTGGAGGGGCAGGGGGTGGTGATGG
TGCCCATGGCGGTGGTGGCTTTGGGGACGCCGCCCCGAGTGCCGTCTTTA
GAGATGGTCGGACCCGGGGAGGAGGAGGAGGAGGGAAGGGAAGAGGAGGA
GGGAAGGGAGGGAGAGGGGAAGGGGAAGGAGCTGGGAGAGAAGACGGGAA
TGGAGAAGAAAGATTGGGATTTGAATGTAAAGAAGAAGAACAGAACAACA
AAAAAGGTGGAGAGAGAGGAGGAGGAGGAGGAGGAGAAGGGTGAGGAGGA
GGAGGCTGTCAAAGCTGTTAATAATAAGAAAAAGAACAAGAATATGTCAA
ATTCTGGGAAGAAGAAGAAGAAGAAGAGCTGGAAGCTCTCCACTGCCGAG
CGGCCAGCGGTAAGAGTGGGGCCGACGAAGGGGAAAAAACGGAAGAAGCA
GAAGATGGAGTAG

Synonyms

Publications