jgi.p|Nanoce1779_2|592100, mRNA_5313 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592100
Unique NamemRNA_5313
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1315
Alignment locationscaffold_13:144729..146043 -

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Properties
Property NameValue
TranscriptId592186
TrackFilteredModels2
ProteinId592100
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:144729..146043 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592100gene_5313Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592100mRNA_5313-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5313CDS_5313Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5313 ID=mRNA_5313|Name=jgi.p|Nanoce1779_2|592100|organism=Nannochloropsis oceanica|type=mRNA|length=1315bp
AGTCCAAGTCGTCAGATCAGATCAGGGTCGCCTTTTGACGCCATGCCATC
CGACGTCGTCAAACCCATGCACTACTGGCCCTCCCCTCTGCTTACTTTAG
CCCACACAATTTTTCAATCGAATCCTGCATTGCCCTCTCCTTTCACAAAT
ACATAGCCTTGTCGTGTCCAAGACGCAAGGAAGACGCTCGACGACGCAAG
AAGAAGTTACTGACGACACGCTTCAAGTCCTGTCGTCCCCCCCGGGCCAA
GTCGACACACAAGTGATCCGCAATTATGTCTTCTCCATCTAAGCAGGTCT
TGCTTATGGTGGCTAGCACAGCCATGGTTGTGGCGACTTTGAGTATCTTG
CTGCCGAGCAATTTGGGAAAGTGTTTAAGCCGACGTAAATCTGTCGTCCT
GAGACCCGAGCATAAGAAGCTACTCGACCGGGCGGAGCGCGAGGACCTGC
ACAAAGCCCTGGCCGAGGCTATGGAGCTCGTGGAGCAAAAGAATAAGAAT
AGTTTTGCTTTGGAAAAACTGCAGGAGAAGCTGCGATTGCTGGAGGAAAA
GCTAGCGGCAAACGATATTGCCCTGGACGAGCTCACAGATAGCTTTGAGG
AGTCCTTGCGTCGGCACCAGCAGCTGACGAACGCCGCTCTTTCGCCCATC
AGGAGCGAGATCGGCCTGCTCAAGGACCGGTTAAATGATCTCACAGTCTT
GCTGAAGGCGAGCTCGGCACCGACCGGGTGCGGTGGAGGGAAACAGCGAC
TGCACCGGCAGCAGGAACAAAGGGAGGGCAATTTTTTGGGAGTTGAGGCG
ATTAAAAGCAATGTCTCGCACCTGACTACTGTGGCGACAGCTTTGGGGAT
GAGAGCTGCCTATGCAGATAAGATGGGGACAGAGAACATGGACGCGGCGA
CGCCTGCATACATAATTTCGGATTGGTCTGAGTTGTCCTCGAAATAAAAC
GGGGAAAACAGAGACCGGGGAATGGGGGAAGAAGGAGTGTTAAGAGAGGA
GGAGTGACTGAATCTACTACTTGATTGTGTACGTATGAGCGATCTTGTGC
AGGAAAGAAAGGCAGAAAAGAAACGGGTTCGTGAAGATGGAACGCCACTA
CATGTATTTCAACTGTTTTTTGGGAAGGAGAAGAAAGGGATCAATACTGG
CATATATTGGTATCCACAAAAAAAAAGCACAAAAAGAAAGGGACAGACAG
AGAGAAATGATGTGATGTAGTGGAAGTAAGGTTCGCCGTACCGTAATTTT
GGTTTTTCTGTTTATTTCTTTCACTTCCCTGTTGCCGGCCGACCAAGCGA
AGAAGCACACTAATC
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protein sequence of jgi.p|Nanoce1779_2|592100

>mRNA_5313-protein ID=mRNA_5313-protein|Name=jgi.p|Nanoce1779_2|592100|organism=Nannochloropsis oceanica|type=polypeptide|length=224bp
MSSPSKQVLLMVASTAMVVATLSILLPSNLGKCLSRRKSVVLRPEHKKLL
DRAEREDLHKALAEAMELVEQKNKNSFALEKLQEKLRLLEEKLAANDIAL
DELTDSFEESLRRHQQLTNAALSPIRSEIGLLKDRLNDLTVLLKASSAPT
GCGGGKQRLHRQQEQREGNFLGVEAIKSNVSHLTTVATALGMRAAYADKM
GTENMDAATPAYIISDWSELSSK*
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mRNA from alignment at scaffold_13:144729..146043-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5313 ID=mRNA_5313|Name=jgi.p|Nanoce1779_2|592100|organism=Nannochloropsis oceanica|type=mRNA|length=1315bp|location=Sequence derived from alignment at scaffold_13:144729..146043- (Nannochloropsis oceanica)
AGTCCAAGTCGTCAGATCAGATCAGGGTCGCCTTTTGACGCCATGCCATC
CGACGTCGTCAAACCCATGCACTACTGGCCCTCCCCTCTGCTTACTTTAG
CCCACACAATTTTTCAATCGAATCCTGCATTGCCCTCTCCTTTCACAAAT
ACATAGCCTTGTCGTGTCCAAGACGCAAGGAAGACGCTCGACGACGCAAG
AAGAAGTTACTGACGACACGCTTCAAGTCCTGTCGTCCCCCCCGGGCCAA
GTCGACACACAAGTGATCCGCAATTATGTCTTCTCCATCTAAGCAGGTCT
TGCTTATGGTGGCTAGCACAGCCATGGTTGTGGCGACTTTGAGTATCTTG
CTGCCGAGCAATTTGGGAAAGTGTTTAAGCCGACGTAAATCTGTCGTCCT
GAGACCCGAGCATAAGAAGCTACTCGACCGGGCGGAGCGCGAGGACCTGC
ACAAAGCCCTGGCCGAGGCTATGGAGCTCGTGGAGCAAAAGAATAAGAAT
AGTTTTGCTTTGGAAAAACTGCAGGAGAAGCTGCGATTGCTGGAGGAAAA
GCTAGCGGCAAACGATATTGCCCTGGACGAGCTCACAGATAGCTTTGAGG
AGTCCTTGCGTCGGCACCAGCAGCTGACGAACGCCGCTCTTTCGCCCATC
AGGAGCGAGATCGGCCTGCTCAAGGACCGGTTAAATGATCTCACAGTCTT
GCTGAAGGCGAGCTCGGCACCGACCGGGTGCGGTGGAGGGAAACAGCGAC
TGCACCGGCAGCAGGAACAAAGGGAGGGCAATTTTTTGGGAGTTGAGGCG
ATTAAAAGCAATGTCTCGCACCTGACTACTGTGGCGACAGCTTTGGGGAT
GAGAGCTGCCTATGCAGATAAGATGGGGACAGAGAACATGGACGCGGCGA
CGCCTGCATACATAATTTCGGATTGGTCTGAGTTGTCCTCGAAATAAAAC
GGGGAAAACAGAGACCGGGGAATGGGGGAAGAAGGAGTGTTAAGAGAGGA
GGAGTGACTGAATCTACTACTTGATTGTGTACGTATGAGCGATCTTGTGC
AGGAAAGAAAGGCAGAAAAGAAACGGGTTCGTGAAGATGGAACGCCACTA
CATGTATTTCAACTGTTTTTTGGGAAGGAGAAGAAAGGGATCAATACTGG
CATATATTGGTATCCACAAAAAAAAAGCACAAAAAGAAAGGGACAGACAG
AGAGAAATGATGTGATGTAGTGGAAGTAAGGTTCGCCGTACCGTAATTTT
GGTTTTTCTGTTTATTTCTTTCACTTCCCTGTTGCCGGCCGACCAAGCGA
AGAAGCACACTAATC
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Coding sequence (CDS) from alignment at scaffold_13:144729..146043-

>mRNA_5313 ID=mRNA_5313|Name=jgi.p|Nanoce1779_2|592100|organism=Nannochloropsis oceanica|type=CDS|length=672bp|location=Sequence derived from alignment at scaffold_13:144729..146043- (Nannochloropsis oceanica)
ATGTCTTCTCCATCTAAGCAGGTCTTGCTTATGGTGGCTAGCACAGCCAT
GGTTGTGGCGACTTTGAGTATCTTGCTGCCGAGCAATTTGGGAAAGTGTT
TAAGCCGACGTAAATCTGTCGTCCTGAGACCCGAGCATAAGAAGCTACTC
GACCGGGCGGAGCGCGAGGACCTGCACAAAGCCCTGGCCGAGGCTATGGA
GCTCGTGGAGCAAAAGAATAAGAATAGTTTTGCTTTGGAAAAACTGCAGG
AGAAGCTGCGATTGCTGGAGGAAAAGCTAGCGGCAAACGATATTGCCCTG
GACGAGCTCACAGATAGCTTTGAGGAGTCCTTGCGTCGGCACCAGCAGCT
GACGAACGCCGCTCTTTCGCCCATCAGGAGCGAGATCGGCCTGCTCAAGG
ACCGGTTAAATGATCTCACAGTCTTGCTGAAGGCGAGCTCGGCACCGACC
GGGTGCGGTGGAGGGAAACAGCGACTGCACCGGCAGCAGGAACAAAGGGA
GGGCAATTTTTTGGGAGTTGAGGCGATTAAAAGCAATGTCTCGCACCTGA
CTACTGTGGCGACAGCTTTGGGGATGAGAGCTGCCTATGCAGATAAGATG
GGGACAGAGAACATGGACGCGGCGACGCCTGCATACATAATTTCGGATTG
GTCTGAGTTGTCCTCGAAATAA
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Synonyms
Publications