jgi.p|Nanoce1779_2|592177, mRNA_5335 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592177
Unique NamemRNA_5335
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length547
Alignment locationscaffold_13:192357..193781 +

Link to JBrowse

Properties
Property NameValue
TranscriptId592263
TrackFilteredModels2
ProteinId592177
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:192357..193781 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592177gene_5335Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592177mRNA_5335-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5335CDS_5335Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5335 ID=mRNA_5335|Name=jgi.p|Nanoce1779_2|592177|organism=Nannochloropsis oceanica|type=mRNA|length=547bp
CAGAAACGGAATCACGAGCATGACGAGCGACTGGGGCATGTCCGTGCTTA
AGTTCGGCCTGGCCAGCGTCGTCCTCACCCTATTTGCCAGCATGGGGTCT
CAGCCATCATATAACTTTCCCATTGCTTTGCTGAGTATTTTTGTACCCCA
TCTTCCCAAGCCCTTCTTGACCTCCTTGCTCTTTGTCCTTCTGCCCATCA
GTGTACTGCTGGATATCATCTGGGCATCTCTCTATGGCCCCTACCTCGGC
AGCGGTGCCCCCCTGCTCGCGTTGATTTTGATGGTCCTAAACCTTTTCCT
AAAGCTTCCATGGGCATACGTAGCTTTTGAGCTGATGAACGAGACAGGGG
GGAGCCCTATCGTTCTGCTCACACCGGAGCTGGCCATTGGAGGCGCGGGG
TTGGGGGACGCATCGCATGAGCGTATTACTGACATCTGATGAGTGTCAGT
GATAGCCGTATTGGATTTACCAAAATGTTACAAATGAACGCATACAGCAG
AAATAGAGGAACAAAAAGAACGTACTTTTGGCAACATTCTCAAAAAA
back to top

protein sequence of jgi.p|Nanoce1779_2|592177

>mRNA_5335-protein ID=mRNA_5335-protein|Name=jgi.p|Nanoce1779_2|592177|organism=Nannochloropsis oceanica|type=polypeptide|length=140bp
MTSDWGMSVLKFGLASVVLTLFASMGSQPSYNFPIALLSIFVPHLPKPFL
TSLLFVLLPISVLLDIIWASLYGPYLGSGAPLLALILMVLNLFLKLPWAY
VAFELMNETGGSPIVLLTPELAIGGAGLGDASHERITDI*
back to top

mRNA from alignment at scaffold_13:192357..193781+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5335 ID=mRNA_5335|Name=jgi.p|Nanoce1779_2|592177|organism=Nannochloropsis oceanica|type=mRNA|length=1425bp|location=Sequence derived from alignment at scaffold_13:192357..193781+ (Nannochloropsis oceanica)
CAGAAACGGAATCACGAGCATGACGAGCGACTGGGGCATGTCCGTGCTTA
AGTTCGGCCTGGCCAGCGTCGTCCTCACCCTATTTGCCAGCATGGGGTCT
CAGCCATCATATAACTTTCCCATTGCTTTGCTGAGTATTTTTGTACCCCA
TCTTCCCAAGCCCTTCTTGACCTCCTTGCTCTTTGTCCTTCTGCCCATCA
GTGTACTGCTGGATATCATCTGGGCATCTCTCTATGGCCCCTACCTCGGC
AGCGGTGCCCCCCTGCTCGCGTTGATTTTGATGGTCCTAAACCTTTTCCT
AAAGCTTCCATGGGCATACGTAGCTTTTGAGCTGATGAACGAGACAGGGG
GGAGCCCTATCGTTCTGCTCACACCGGAGCTGGCCATTGGAGGCGCGGGG
TTGGGGGACGCATCGCATGAGCGTATTACTGACATCTGATGAGTGTCAGT
GATAGCCGTATTGGATTTACCAAAATGTTACAAATGAACGCATACAGCAG
AAATAGAGGAACAAAAAGAACGTACTTTCTGCAAAATTGATTTCTTCCCG
CTTCTGATGTCTAGAGATAATTCTTCCTGATAATGTTTGATTGTCTCTGG
GCTTTTTTGGTATATCCGTCCCTTGAAATGACCTGTTGATTCACACGAGT
CCGGTTTGGTTAATGCATCTGTCTCTCCTTTTTATGCTTCTTAGGCTTTT
TGCTCTTCTTGTTAGGCGAGACCTCATCTTCCACTTCCACCAACATTCCG
TCTTCCTCTTCCTTTCCCCCCCCCTTCCGCTCTTGCCGCGGGGCAGGTTT
CGCCACGTCCGCCTTGGTGTTGCCCTTCTCCTTCATCTTCTTCCTCCTCT
TTTTGTTATCCTTATTCGGCGCGGTGCCCGCGTCTTCTGCAGACATCCCT
GCGGCAGCAGCCTCCTTGCTCGCATCCTCCTTCTCTTTCTCTCTTTCCCT
CTGACTGTGCTTGCGCTTCATTTCCGAGGTGGCATGGTGTTCATTTGTCA
CCCCATTTGCCGCTTCTCCAATCGCAGCTGCTCCACGCTTCTTGTCCATC
TTCCCCCTCTCTTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG
CTGCTGCTGCTGCTGATGCTGCTTTTGTTGTGCTGCCATCAACGCGTCCT
TTTCCTTTTTCTTCTTCTTATTTTTTTCATACTGCTGCTGCTGCTGCTGC
TGCTGCTGCTGTACAACCGCGCCTCCATCATCTTGCCCCTGAATCTCCTT
CAAGCTCGCCCCAATCTTTCTCACCACTTTATTAAACATCGCCAGCACGG
TCTCTCCATCTATCCCCAACTCCCGTGCAAGCTGATCCACCGTCCGGTGC
CTCAAGCCCAGTCCCACTAAAATCGCCTCCATCAATTTCGATAAACTCAC
ACTCGCTGGCAACATTCTCAAAAAA
back to top

Coding sequence (CDS) from alignment at scaffold_13:192357..193781+

>mRNA_5335 ID=mRNA_5335|Name=jgi.p|Nanoce1779_2|592177|organism=Nannochloropsis oceanica|type=CDS|length=420bp|location=Sequence derived from alignment at scaffold_13:192357..193781+ (Nannochloropsis oceanica)
ATGACGAGCGACTGGGGCATGTCCGTGCTTAAGTTCGGCCTGGCCAGCGT
CGTCCTCACCCTATTTGCCAGCATGGGGTCTCAGCCATCATATAACTTTC
CCATTGCTTTGCTGAGTATTTTTGTACCCCATCTTCCCAAGCCCTTCTTG
ACCTCCTTGCTCTTTGTCCTTCTGCCCATCAGTGTACTGCTGGATATCAT
CTGGGCATCTCTCTATGGCCCCTACCTCGGCAGCGGTGCCCCCCTGCTCG
CGTTGATTTTGATGGTCCTAAACCTTTTCCTAAAGCTTCCATGGGCATAC
GTAGCTTTTGAGCTGATGAACGAGACAGGGGGGAGCCCTATCGTTCTGCT
CACACCGGAGCTGGCCATTGGAGGCGCGGGGTTGGGGGACGCATCGCATG
AGCGTATTACTGACATCTGA
back to top
Synonyms
Publications