jgi.p|Nanoce1779_2|592450, mRNA_5413 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|592450
Unique NamemRNA_5413
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2073
Alignment locationscaffold_13:375559..378032 -

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Properties
Property NameValue
TranscriptId592536
TrackFilteredModels2
ProteinId592450
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_13supercontigscaffold_13:375559..378032 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592450gene_5413Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|592450mRNA_5413-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_5413CDS_5413Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_5413 ID=mRNA_5413|Name=jgi.p|Nanoce1779_2|592450|organism=Nannochloropsis oceanica|type=mRNA|length=2073bp
CCCGTCGCCAGCCTTGCGTCCTCCGACGGTGGCGGTTCCACCTCTCTCTC
CCCCCCCAAAGGCAAAATTTGCGCACCTCCCCCTTGGGAGCTCATCGCAA
TCCCCATGCCTGCCAAGCCCAACTCATCCGCAGACTCATCATTCCTATGC
CTGTATCCCTTCTCCACTTCCTCCTCATCCCCATCTCCCTCCCTCCCAGG
CACCGGCCCTCTCGGAGGGTGCAAGTGAAAAAGCCCCCCAGAGAAATCAA
TTCCGTCTATGTCAATGTTTCGCCTATCCATATCATCCTTTCCCTCCTCC
CCATTCAATCCCTCCACCACCGCCTCTGTATTACATCCCTTCGCCTGCTC
ATGTGATCTTCCCCACTCCGCCTCCCCTGCATCCTGCTCTCTTTGGTGTT
GTGACTGCAATTGCTGCTGCTCCTCGATATCTCCCCCCGGGGCCTTGAGT
GCTTCAGCGAGAAGTGCGCGAGGCGTTTCCACCGCCATCGTCTTCGTCCC
CGTCGGAGGAGGAGGAGGAGGAGATGAAGGAACAGGAAGTTCGCGAAGAG
AGAGAGGGAGAGGTGAGCGTGTACGTCCTTCCTCCCCTCCTCTACCACCG
CCACGAGATGCTACAGGGTGCCGCACACCACCCATAGGCAACGAAAGAGG
ACGAGGAGCCTCAGTAAGCTGCGGAGCACCGCTACGATGCCGGGGGATGG
TAAGACTTCTCGGAGTCATAGGGGGAGAATGAGGGGGAGGGCCTAAGGAC
TCCTCCTCTGCCGAGGCCTCACTCCTGTCCTTGGCGCTGCTTCCTTCACC
ACCACGGCCACTGCTGGCGGTGCCACCTGTAATATCGCCACCAGGCATGT
GGGAGGAAACGATTTCAATATCAAGGAGGCCGAAGTTTGAGGGATCGTTG
TAACCGTAATAGAGCCGTCGGACTTCCTGTTGGGCGCATTCGACTACTTC
GTTCAGGGTTTGGAGGCGCTCAGAGAGGAGGCGAATGTCATGGAGAAGGT
CTTGTCGCCACTGTTGCCCTGTGCGGTTGAAGCACCGGTGAAGGCAACGC
CACAAGCGGGAGTCGGGTTGGGCATAGAGGGCCATGGTGTGCTCGAGCTT
GCGGTGTACGGTCGCCCGCTCTGTGACTAGAGCTTCAAGACGAGCGAGGC
TCATCGTAAGCGTCACGCTCAGGACCTTGCCGATGGATTCACCGAGTTGC
GGGCCGTGTGGAGCGAGGAGTCGGTCGAAGAATGCTTTGAGCACGGCGAC
ATTGCGCATTTTAGGCGGGATGTGGGTGACCATAACAGAGTAATTGTGCG
TCCGTGGCAGGGTGAGCCATTTGAAACGGAGGGCGATGTAGGAGCGGTAT
TCGAGCCAGAGCAATCCAACGGTGAATGCGGTAAATAGCCAAGTGGCAGC
AATGTTGGTGCGATAGACATGCGTGTTCCCAATGCGGTTCCGCGGGGGGA
GGTTGGCCATGGTGGTGAGGGCGAATTGGGAGTCGTTTGTTGCGGGGTTG
CCATATTTTATGTTGAGGGGTAATAAGACCCCGAGGCCGAAAACGGAACA
GAGGAGGAAGAGAATGGCGTAGAGCCGCTGGGTTCGAAGAAAAACGAGGG
CGTCTAGGCCCACGGTGCGGAGGATTTCGTCCTCGGGGATGGTATAGATG
TCTTTGACCCAGGAGAAAAGCCTTCGGGGGTGACGTTCCATTACCATGGG
GGTTCGGTTAGGATGAAGATACCATCTTGGAGCGTAGGTGCGGGGAAAGA
GATTGAACCGGTGGATGGTGCTGAATCCGAGGATTACGAGGAGGAAGATT
GTGGTACCAGCAGACAAGGTTAGGAGGATGGCTTGCCCTGAGATGGCAAA
GGCCGTTTGAGGGTCAGGGATGCCCGGCATGCTTGTCGCCCTAGCACAGT
GGCTCCGCCCCCTGCTCGAGAGTGGTGGATGACCCCAAGAGGTACGGCAC
TGCTCAAGTCTCCTCTCTCAGCTTGCCCGTTTTTATGCCACTGTTCGCTC
ACGGAAAGCCCTGCGGACCCAGGGCGTCGTTGCTTTGGCTGTTCAGATAG
GGCGTACTGGTCCTGCCCTGCTG
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protein sequence of jgi.p|Nanoce1779_2|592450

>mRNA_5413-protein ID=mRNA_5413-protein|Name=jgi.p|Nanoce1779_2|592450|organism=Nannochloropsis oceanica|type=polypeptide|length=158bp
MSMFRLSISSFPSSPFNPSTTASVLHPFACSCDLPHSASPASCSLWCCDC
NCCCSSISPPGALSASARSARGVSTAIVFVPVGGGGGGDEGTGSSRRERG
RGERVRPSSPPLPPPRDATGCRTPPIGNERGRGASVSCGAPLRCRGMVRL
LGVIGGE*
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mRNA from alignment at scaffold_13:375559..378032-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_5413 ID=mRNA_5413|Name=jgi.p|Nanoce1779_2|592450|organism=Nannochloropsis oceanica|type=mRNA|length=2474bp|location=Sequence derived from alignment at scaffold_13:375559..378032- (Nannochloropsis oceanica)
CCCGTCGCCAGCCTTGCGTCCTCCGACGGTGGCGGTTCCACCTCTCTCTC
CCCCCCCAAAGGCAAAATTTGCGCACCTCCCCCTTGGGAGCTCATCGCAA
TCCCCATGCCTGCCAAGCCCAACTCATCCGCAGACTCATCATTCCTATGC
CTGTATCCCTTCTCCACTTCCTCCTCATCCCCATCTCCCTCCCTCCCAGG
CACCGGCCCTCTCGGAGGGTGCAAGTGAAAAAGCCCCCCAGAGAAATCAA
TTCCGTCTATGTCAATGTTTCGCCTATCCATATCATCCTTTCCCTCCTCC
CCATTCAATCCCTCCACCACCGCCTCTGTATTACATCCCTTCGCCTGCTC
ATGTGATCTTCCCCACTCCGCCTCCCCTGCATCCTGCTCTCTTTGGTGTT
GTGACTGCAATTGCTGCTGCTCCTCGATATCTCCCCCCGGGGCCTTGAGT
GCTTCAGCGAGAAGTGCGCGAGGCGTTTCCACCGCCATCGTCTTCGTCCC
CGTCGGAGGAGGAGGAGGAGGAGATGAAGGAACAGGAAGTTCGCGAAGAG
AGAGAGGGAGAGGTGAGCGTGTACGTCCTTCCTCCCCTCCTCTACCACCG
CCACGAGATGCTACAGGGTGCCGCACACCACCCATAGGCAACGAAAGAGG
ACGAGGAGCCTCAGTAAGCTGCGGAGCACCGCTACGATGCCGGGGGATGG
TAAGACTTCTCGGAGTCATAGGGGGAGAATGAGGGGGAGGGCCTAAGGAC
TCCTCCTCTGCCGAGGCCTCACTCCTGTCCTTGGCGCTGCTTCCTTCACC
ACCACGGCCACTGCTGGCGGTGCCACCTGTAATATCGCCACCAGGCATGT
GGGAGGAAACGATTTCAATATCAAGGAGGCCGAAGTTTGAGGGATCGTTG
TAACCGTAATAGAGCCGTCGGACTTCCTGTTGGGCGCATTCGACTACTTC
GTTCAGGGTTTGGAGGCGCTCAGAGAGGAGGCGAATGTCATGGAGAAGGT
CTTGTCGCCACTGTTGCCCTGTGCGGTTGAAGCACCGGTGAAGGCAACGC
CACAAGCGGGAGTCGGGTTGGGCATAGAGGGCCATGGTGTGCTCGAGCTT
GCGGTGTACGGTCGCCCGCTCTGTGACTAGAGCTTCAAGACGAGCGAGGC
TCATCGTAAGCGTCACGCTCAGGACCTTGCCGATGGATTCACCGAGTTGC
GGGCCGTGTGGAGCGAGGAGTCGGTCGAAGAATGCTTTGAGCACGGCGAC
ATTGCGCATTTTAGGCGGGATGTGGGTGACCATAACAGAGTAATTGTGCG
TCCGTGGCAGGGTGAGCCATTTGAAACGGAGGGCGATGTAGGAGCGGTAT
TCGAGCCAGAGCAATCCAACGGTGAATGCGGTAAATAGCCAAGTGGCAGC
AATGTTGGTGCGATAGACATGCGTGTTCCCAATGCGGTTCCGCGGGGGGA
GGTTGGCCATGGTGGTGAGGGCGAATTGGGAGTCGTTTGTTGCGGGGTTG
CCATATTTTATGTTGAGGGGTAATAAGACCCCGAGGCCGAAAACGGAACA
GAGGAGGAAGAGAATGGCGTAGAGCCGCTGGGTTCGAAGAAAAACGAGGG
CGTCTAGGCCCACGGTGCGGAGGATTTCGTCCTCGGGGATGGTATAGATG
TCTTTGACCCAGGAGAAAAGCCTTCGGGGGTGACGTTCCATTACCATGGG
GGTTCGGTTAGGATGAAGATACCATCTTGGAGCGTAGGTGCGGGGAAAGA
GATTGAACCGGTGGATGGTGCTGAATCCGAGGATTACGAGGAGGAAGATT
GTGGTACCAGCAGACAAGGTTAGGAGGATGGCTTGCCCTGGTAAGTGGGA
TGTGTGGGGATTAAGGGAGAGAGAGGGGGACATGAAATCATACTAGGAGT
TAGGGGCAAGAGGTTTGTCGCAAAGAAGGCGATATCGCAGTAGCTGCTGC
GAGCAGCATGTCATATGATGACACTTCGGCACTCATCAAAGAGGGAAAGA
CGGCCTGTAGTCTTCTCTGGCGTTGCCTCTTTGAGCAGGGCATCGATGAG
GCAGCCCCAATGAAATGCTGGCGACACAATGAGAAACCATTTATGTGCAT
ATCGACAAGCACACCTTCTCCCATACGCTGCCACCAAGTAAATATGCAAC
ACAGTACCCGCAACACGTACCTGAGATGGCAAAGGCCGTTTGAGGGTCAG
GGATGCCCGGCATGCTTGTCGCCCTAGCACAGTGGCTCCGCCCCCTGCTG
CTAATTGAAGAAAACGAATGTCAGAAGCCTCATTGCCATATGCCTTGCTG
CCTTTATGTACGCACCTCGAGAGTGGTGGATGACCCCAAGAGGTACGGCA
CTGCTCAAGTCTCCTCTCTCAGCTTGCCCGTTTTTATGCCACTGTTCGCT
CACGGAAAGCCCTGCGGACCCAGGGCGTCGTTGCTTTGGCTGTTCAGATA
GGGCGTACTGGTCCTGCCCTGCTG
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Coding sequence (CDS) from alignment at scaffold_13:375559..378032-

>mRNA_5413 ID=mRNA_5413|Name=jgi.p|Nanoce1779_2|592450|organism=Nannochloropsis oceanica|type=CDS|length=474bp|location=Sequence derived from alignment at scaffold_13:375559..378032- (Nannochloropsis oceanica)
ATGTCAATGTTTCGCCTATCCATATCATCCTTTCCCTCCTCCCCATTCAA
TCCCTCCACCACCGCCTCTGTATTACATCCCTTCGCCTGCTCATGTGATC
TTCCCCACTCCGCCTCCCCTGCATCCTGCTCTCTTTGGTGTTGTGACTGC
AATTGCTGCTGCTCCTCGATATCTCCCCCCGGGGCCTTGAGTGCTTCAGC
GAGAAGTGCGCGAGGCGTTTCCACCGCCATCGTCTTCGTCCCCGTCGGAG
GAGGAGGAGGAGGAGATGAAGGAACAGGAAGTTCGCGAAGAGAGAGAGGG
AGAGGTGAGCGTGTACGTCCTTCCTCCCCTCCTCTACCACCGCCACGAGA
TGCTACAGGGTGCCGCACACCACCCATAGGCAACGAAAGAGGACGAGGAG
CCTCAGTAAGCTGCGGAGCACCGCTACGATGCCGGGGGATGGTAAGACTT
CTCGGAGTCATAGGGGGAGAATGA
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Synonyms
Publications