|
|
Properties
| Property Name | Value |
|---|
| TranscriptId | 639998 |
| Track | FilteredModels2 |
| ProteinId | 639912 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_13 | supercontig | scaffold_13:551259..553153 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5494 ID=mRNA_5494|Name=jgi.p|Nanoce1779_2|639912|organism=Nannochloropsis oceanica|type=mRNA|length=1785bp
ATGGGAGACGTGGCCGACATCTTGGGCGGTGCCCGTCGGTCGCAAATTTC
AGAAGGCGAGGGCTTGCTTAAGGACGGCGGGTTCAAAACCGGTGGCGGTG
GTGGGGCAGGGGCCAACAAAGCCAAGAGGAAACCGGCAGGGATGAGTCGC
GAGGTGTTCAATTTGATTGGAAAGGAAGGCATGGCCCCTGCAGTGGTTAG
CAAGAAGGAAGTTGGGCTCAAGGACAAGCGGGAGGGTATGGCAAGGACTC
GATGGGTCTTCACAACTTTCCGAAACTCGGCCCGCAAGGACCAAGAGAAG
CTAGACAAACTGCAGCAGGGGCAGGGAGGAGTAGGGGAGGAGGAAGCGAA
AGAAGGCGGGGCTAACGGTGCTACTGCCGCTGCTGCCGGGCAAGTGTTTT
TCCATTGGGTCAAGGCGGCGACGGATTACCCTGACTACCCTTTCGCGCGA
TTTAACGTGCAGACACCGCCGGTAGAATTTACAGATGAGGAGTACAAAGC
GTTTTTGGCAGAGGGAGACGCCGCAGCAGCAGCAGCAATGGCGGAAGCCA
CGGCAAGAGGAGCAGCAGGAATAGTAGCATGGGGGATAGAGGAAACGAAG
GTGTTGTTGGAACTGTGCAGTCGGTTTGATTTGCGGTGGCCTGTCATCCA
TGATCGCTTCCCAGAAGCGATCGCTGATGCAGCGGCTGCGGCAAAAAAGG
GAGAGAAGGAGGGAGGGCAGGAGGGAGGGGCCGCAAGCAAGGCAAACGAA
GCGACGAAGTCTCCTTCTCCTCAACGGTCGATCGAAGACCTGCAAGCGCG
TTACTATTCTGTGCGCAAGACCTTGCGGCTGGCACGGCAAGCTGCTGCGG
CGGCGGCGGCAGCGCAGGGAGGGGTGGCCCCACCGCAGGTCATGTTCCAG
CCAGGATTGGACGAGGACGGGGACACATTTGATCACACCTATGAGAAGAC
AAGGAGGGCACAGCTGACGCAATTGTTCAGGAGGAGCAAGGAGGAAGAAT
TGGAGGAACTCCGCCTCCGCGAAGAGCTCAAGACCATCGACGCCGCCCTC
AAGCGCGTGCGAAAACACCCCCACAAGTCTATCGTTCGAGACCCCGTCGA
AGCCAAGGCCGCCACTACCACCCACCCCGATCCTCAGCAACCAGGGCAGT
ACCGGACCATCCCCCTGGTCAACGAAAAATACATTTATGAAGCGCGTCCC
GAGCCCAAGCCAGGCCACCCTTACCTTCAAAGTGCTCGTCTGTCGGTGCC
ACTCGCCCCTCCCCGGTTACAGAAGGGGATGCTTCAAAAAGTGAAGCAGT
TGTCGATCGACTTGGGCCTGACGCCGCGGCCGCTGCCCACCAAGACCGTT
TGTGATTTATACGACGACTTGCGGCGGGATATGGTAGAATTGTTCACTTT
GCAGAAATTGGGGAGGCAGAAGGAGGTACTGCTTGAGGGCTTGAAGGAGG
GACAGGCGGAAAGTGTGGTGCTTGGCCGACAGGCCATGTTGGGGGCGGCG
GGAGCCTGGGAGGGAGGGGTGGGGGGAGGGACGCAGGGGGGTGGGGTGAG
GATAGGAGGAGGAGGAGGAGGAGGAGGAGGCGGAGGAGGAGGAGGAGGAG
GAGGAGGGCAGAGAAAGGGTAGCCATAGGAAGGGACAGATGTCATTGCCG
AGGCAAGGGAGTGGGCATATAGGTGCGGGTGGGGGAGGAGGGATGTATGT
GCAACAACAACAGCAGCTTCATTATCAGGGGATAAGCCATGATTCGAGTT
TCTCGGCTGCAGACGACCGGAAACGGAAAAGATAA back to topprotein sequence of jgi.p|Nanoce1779_2|639912 >mRNA_5494-protein ID=mRNA_5494-protein|Name=jgi.p|Nanoce1779_2|639912|organism=Nannochloropsis oceanica|type=polypeptide|length=595bp
MGDVADILGGARRSQISEGEGLLKDGGFKTGGGGGAGANKAKRKPAGMSR
EVFNLIGKEGMAPAVVSKKEVGLKDKREGMARTRWVFTTFRNSARKDQEK
LDKLQQGQGGVGEEEAKEGGANGATAAAAGQVFFHWVKAATDYPDYPFAR
FNVQTPPVEFTDEEYKAFLAEGDAAAAAAMAEATARGAAGIVAWGIEETK
VLLELCSRFDLRWPVIHDRFPEAIADAAAAAKKGEKEGGQEGGAASKANE
ATKSPSPQRSIEDLQARYYSVRKTLRLARQAAAAAAAAQGGVAPPQVMFQ
PGLDEDGDTFDHTYEKTRRAQLTQLFRRSKEEELEELRLREELKTIDAAL
KRVRKHPHKSIVRDPVEAKAATTTHPDPQQPGQYRTIPLVNEKYIYEARP
EPKPGHPYLQSARLSVPLAPPRLQKGMLQKVKQLSIDLGLTPRPLPTKTV
CDLYDDLRRDMVELFTLQKLGRQKEVLLEGLKEGQAESVVLGRQAMLGAA
GAWEGGVGGGTQGGGVRIGGGGGGGGGGGGGGGGGGQRKGSHRKGQMSLP
RQGSGHIGAGGGGGMYVQQQQQLHYQGISHDSSFSAADDRKRKR* back to topmRNA from alignment at scaffold_13:551259..553153- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5494 ID=mRNA_5494|Name=jgi.p|Nanoce1779_2|639912|organism=Nannochloropsis oceanica|type=mRNA|length=1895bp|location=Sequence derived from alignment at scaffold_13:551259..553153- (Nannochloropsis oceanica)
ATGGGAGACGTGGCCGACATCTTGGGCGGTGCCCGTCGGTCGCAAATTTC
AGAAGGCGAGGGCTTGCTTAAGGACGGCGGGTTCAAAACCGGTGGCGGTG
GTGGGGCAGGGGCCAACAAAGCCAAGAGGAAACCGGCAGGGATGAGTCGC
GAGGTGTTCAATTTGATTGGAAAGGAAGGCATGGCCCCTGCAGTGGTTAG
CAAGAAGGAAGTTGGGCTCAAGGACAAGCGGGAGGGTATGGCAAGGACTC
GATGGGTCTTCACAACTTTCCGAAACTCGGCCCGCAAGGACCAAGAGAAG
CTAGACAAACTGCAGCAGGGGCAGGGAGGAGTAGGGGAGGAGGAAGCGAA
AGAAGGCGGGGCTAACGGTGCTACTGCCGCTGCTGCCGGGCAAGTGTTTT
TCCATTGGGTCAAGGCGGCGACGGATTACCCTGACTACCCTTTCGCGCGA
TTTAACGTGCAGACACCGCCGGTAGAATTTACAGATGAGGAGTACAAAGC
GTTTTTGGCAGAGGGAGACGCCGCAGCAGCAGCAGCAATGGCGGAAGCCA
CGGCAAGAGGAGCAGCAGGAATAGTAGCATGGGGGATAGAGGAAACGAAG
GTGTTGTTGGAACTGTGCAGTCGGTTTGATTTGCGGTGGCCTGTCATCCA
TGATCGCTTCCCAGAAGCGATCGCTGATGCAGCGGCTGCGGCAAAAAAGG
GAGAGAAGGAGGGAGGGCAGGAGGGAGGGGCCGCAAGCAAGGCAAACGAA
GCGACGAAGTCTCCTTCTCCTCAACGGTCGATCGAAGACCTGCAAGCGCG
TTACTATTCTGTGCGCAAGACCTTGCGGCTGGCACGGCAAGCTGCTGCGG
CGGCGGCGGCAGCGCAGGGAGGGGTGGCCCCACCGCAGGTCATGTTCCAG
CCAGGATTGGACGAGGACGGGGACACATTTGATCACACCTATGAGAAGAC
AAGGAGGGCACAGCTGACGCAATTGTTCAGGAGGAGCAAGGAGGAAGAAT
TGGAGGTATTAAGAAGAAGATGGTTTAAATCGAGACGCTCATGTTTTGAG
TGGTGGACTCTCACGCCTCCTCTTCCCCCTCGCACCCTCCTTCCCTCCCT
CCCCATATCACACAGGAACTCCGCCTCCGCGAAGAGCTCAAGACCATCGA
CGCCGCCCTCAAGCGCGTGCGAAAACACCCCCACAAGTCTATCGTTCGAG
ACCCCGTCGAAGCCAAGGCCGCCACTACCACCCACCCCGATCCTCAGCAA
CCAGGGCAGTACCGGACCATCCCCCTGGTCAACGAAAAATACATTTATGA
AGCGCGTCCCGAGCCCAAGCCAGGCCACCCTTACCTTCAAAGTGCTCGTC
TGTCGGTGCCACTCGCCCCTCCCCGGTTACAGAAGGGGATGCTTCAAAAA
GTGAAGCAGTTGTCGATCGACTTGGGCCTGACGCCGCGGCCGCTGCCCAC
CAAGACCGTTTGTGATTTATACGACGACTTGCGGCGGGATATGGTAGAAT
TGTTCACTTTGCAGAAATTGGGGAGGCAGAAGGAGGTACTGCTTGAGGGC
TTGAAGGAGGGACAGGCGGAAAGTGTGGTGCTTGGCCGACAGGCCATGTT
GGGGGCGGCGGGAGCCTGGGAGGGAGGGGTGGGGGGAGGGACGCAGGGGG
GTGGGGTGAGGATAGGAGGAGGAGGAGGAGGAGGAGGAGGCGGAGGAGGA
GGAGGAGGAGGAGGAGGGCAGAGAAAGGGTAGCCATAGGAAGGGACAGAT
GTCATTGCCGAGGCAAGGGAGTGGGCATATAGGTGCGGGTGGGGGAGGAG
GGATGTATGTGCAACAACAACAGCAGCTTCATTATCAGGGGATAAGCCAT
GATTCGAGTTTCTCGGCTGCAGACGACCGGAAACGGAAAAGATAA back to topCoding sequence (CDS) from alignment at scaffold_13:551259..553153- >mRNA_5494 ID=mRNA_5494|Name=jgi.p|Nanoce1779_2|639912|organism=Nannochloropsis oceanica|type=CDS|length=3570bp|location=Sequence derived from alignment at scaffold_13:551259..553153- (Nannochloropsis oceanica)
GAACTCCGCCTCCGCGAAGAGCTCAAGACCATCGACGCCGCCCTCAAGCG
CGTGCGAAAACACCCCCACAAGTCTATCGTTCGAGACCCCGTCGAAGCCA
AGGCCGCCACTACCACCCACCCCGATCCTCAGCAACCAGGGCAGTACCGG
ACCATCCCCCTGGTCAACGAAAAATACATTTATGAAGCGCGTCCCGAGCC
CAAGCCAGGCCACCCTTACCTTCAAAGTGCTCGTCTGTCGGTGCCACTCG
CCCCTCCCCGGTTACAGAAGGGGATGCTTCAAAAAGTGAAGCAGTTGTCG
ATCGACTTGGGCCTGACGCCGCGGCCGCTGCCCACCAAGACCGTTTGTGA
TTTATACGACGACTTGCGGCGGGATATGGTAGAATTGTTCACTTTGCAGA
AATTGGGGAGGCAGAAGGAGGTACTGCTTGAGGGCTTGAAGGAGGGACAG
GCGGAAAGTGTGGTGCTTGGCCGACAGGCCATGTTGGGGGCGGCGGGAGC
CTGGGAGGGAGGGGTGGGGGGAGGGACGCAGGGGGGTGGGGTGAGGATAG
GAGGAGGAGGAGGAGGAGGAGGAGGCGGAGGAGGAGGAGGAGGAGGAGGA
GGGCAGAGAAAGGGTAGCCATAGGAAGGGACAGATGTCATTGCCGAGGCA
AGGGAGTGGGCATATAGGTGCGGGTGGGGGAGGAGGGATGTATGTGCAAC
AACAACAGCAGCTTCATTATCAGGGGATAAGCCATGATTCGAGTTTCTCG
GCTGCAGACGACCGGAAACGGAAAAGATAAATGGGAGACGTGGCCGACAT
CTTGGGCGGTGCCCGTCGGTCGCAAATTTCAGAAGGCGAGGGCTTGCTTA
AGGACGGCGGGTTCAAAACCGGTGGCGGTGGTGGGGCAGGGGCCAACAAA
GCCAAGAGGAAACCGGCAGGGATGAGTCGCGAGGTGTTCAATTTGATTGG
AAAGGAAGGCATGGCCCCTGCAGTGGTTAGCAAGAAGGAAGTTGGGCTCA
AGGACAAGCGGGAGGGTATGGCAAGGACTCGATGGGTCTTCACAACTTTC
CGAAACTCGGCCCGCAAGGACCAAGAGAAGCTAGACAAACTGCAGCAGGG
GCAGGGAGGAGTAGGGGAGGAGGAAGCGAAAGAAGGCGGGGCTAACGGTG
CTACTGCCGCTGCTGCCGGGCAAGTGTTTTTCCATTGGGTCAAGGCGGCG
ACGGATTACCCTGACTACCCTTTCGCGCGATTTAACGTGCAGACACCGCC
GGTAGAATTTACAGATGAGGAGTACAAAGCGTTTTTGGCAGAGGGAGACG
CCGCAGCAGCAGCAGCAATGGCGGAAGCCACGGCAAGAGGAGCAGCAGGA
ATAGTAGCATGGGGGATAGAGGAAACGAAGGTGTTGTTGGAACTGTGCAG
TCGGTTTGATTTGCGGTGGCCTGTCATCCATGATCGCTTCCCAGAAGCGA
TCGCTGATGCAGCGGCTGCGGCAAAAAAGGGAGAGAAGGAGGGAGGGCAG
GAGGGAGGGGCCGCAAGCAAGGCAAACGAAGCGACGAAGTCTCCTTCTCC
TCAACGGTCGATCGAAGACCTGCAAGCGCGTTACTATTCTGTGCGCAAGA
CCTTGCGGCTGGCACGGCAAGCTGCTGCGGCGGCGGCGGCAGCGCAGGGA
GGGGTGGCCCCACCGCAGGTCATGTTCCAGCCAGGATTGGACGAGGACGG
GGACACATTTGATCACACCTATGAGAAGACAAGGAGGGCACAGCTGACGC
AATTGTTCAGGAGGAGCAAGGAGGAAGAATTGGAGGAACTCCGCCTCCGC
GAAGAGCTCAAGACCATCGACGCCGCCCTCAAGCGCGTGCGAAAACACCC
CCACAAGTCTATCGTTCGAGACCCCGTCGAAGCCAAGGCCGCCACTACCA
CCCACCCCGATCCTCAGCAACCAGGGCAGTACCGGACCATCCCCCTGGTC
AACGAAAAATACATTTATGAAGCGCGTCCCGAGCCCAAGCCAGGCCACCC
TTACCTTCAAAGTGCTCGTCTGTCGGTGCCACTCGCCCCTCCCCGGTTAC
AGAAGGGGATGCTTCAAAAAGTGAAGCAGTTGTCGATCGACTTGGGCCTG
ACGCCGCGGCCGCTGCCCACCAAGACCGTTTGTGATTTATACGACGACTT
GCGGCGGGATATGGTAGAATTGTTCACTTTGCAGAAATTGGGGAGGCAGA
AGGAGGTACTGCTTGAGGGCTTGAAGGAGGGACAGGCGGAAAGTGTGGTG
CTTGGCCGACAGGCCATGTTGGGGGCGGCGGGAGCCTGGGAGGGAGGGGT
GGGGGGAGGGACGCAGGGGGGTGGGGTGAGGATAGGAGGAGGAGGAGGAG
GAGGAGGAGGCGGAGGAGGAGGAGGAGGAGGAGGAGGGCAGAGAAAGGGT
AGCCATAGGAAGGGACAGATGTCATTGCCGAGGCAAGGGAGTGGGCATAT
AGGTGCGGGTGGGGGAGGAGGGATGTATGTGCAACAACAACAGCAGCTTC
ATTATCAGGGGATAAGCCATGATTCGAGTTTCTCGGCTGCAGACGACCGG
AAACGGAAAAGATAAATGGGAGACGTGGCCGACATCTTGGGCGGTGCCCG
TCGGTCGCAAATTTCAGAAGGCGAGGGCTTGCTTAAGGACGGCGGGTTCA
AAACCGGTGGCGGTGGTGGGGCAGGGGCCAACAAAGCCAAGAGGAAACCG
GCAGGGATGAGTCGCGAGGTGTTCAATTTGATTGGAAAGGAAGGCATGGC
CCCTGCAGTGGTTAGCAAGAAGGAAGTTGGGCTCAAGGACAAGCGGGAGG
GTATGGCAAGGACTCGATGGGTCTTCACAACTTTCCGAAACTCGGCCCGC
AAGGACCAAGAGAAGCTAGACAAACTGCAGCAGGGGCAGGGAGGAGTAGG
GGAGGAGGAAGCGAAAGAAGGCGGGGCTAACGGTGCTACTGCCGCTGCTG
CCGGGCAAGTGTTTTTCCATTGGGTCAAGGCGGCGACGGATTACCCTGAC
TACCCTTTCGCGCGATTTAACGTGCAGACACCGCCGGTAGAATTTACAGA
TGAGGAGTACAAAGCGTTTTTGGCAGAGGGAGACGCCGCAGCAGCAGCAG
CAATGGCGGAAGCCACGGCAAGAGGAGCAGCAGGAATAGTAGCATGGGGG
ATAGAGGAAACGAAGGTGTTGTTGGAACTGTGCAGTCGGTTTGATTTGCG
GTGGCCTGTCATCCATGATCGCTTCCCAGAAGCGATCGCTGATGCAGCGG
CTGCGGCAAAAAAGGGAGAGAAGGAGGGAGGGCAGGAGGGAGGGGCCGCA
AGCAAGGCAAACGAAGCGACGAAGTCTCCTTCTCCTCAACGGTCGATCGA
AGACCTGCAAGCGCGTTACTATTCTGTGCGCAAGACCTTGCGGCTGGCAC
GGCAAGCTGCTGCGGCGGCGGCGGCAGCGCAGGGAGGGGTGGCCCCACCG
CAGGTCATGTTCCAGCCAGGATTGGACGAGGACGGGGACACATTTGATCA
CACCTATGAGAAGACAAGGAGGGCACAGCTGACGCAATTGTTCAGGAGGA
GCAAGGAGGAAGAATTGGAG back to top
|