jgi.p|Nanoce1779_2|593589, mRNA_6046 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|593589
Unique Name	mRNA_6046
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	985
Alignment location	scaffold_14:396912..398356 +

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Properties


Property Name	Value
TranscriptId	593675
Track	FilteredModels2
ProteinId	593589

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_14	supercontig	scaffold_14:396912..398356 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593589	gene_6046	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|593589	mRNA_6046-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6046	CDS_6046	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_14:396912..398356+
coding sequence from alignment at scaffold_14:396912..398356+

mRNA sequence

>mRNA_6046 ID=mRNA_6046|Name=jgi.p|Nanoce1779_2|593589|organism=Nannochloropsis oceanica|type=mRNA|length=985bp
ACAGTTCAATACGCCGTTGCTTCCTTCAGGACATTTACAATGGTTCAGTT
GTTCACACGATTTGTGGAGGTCGGCCGGGTAGTGCTAGTGAACTATGGCC
CCGACTATGGCAAGCTGGCCACCGTCATCGACGTGGTGGATGGCAACAAG
GTCCTTGTGGAAGGCCCCGACTCGAACGTGACCCGGCAAGTCATTCCTTT
GAAGCGTGTCTACCTTACGGACTTGAAGGTGAAGATCCCCCGTAATGCGC
GTGCCAAGACTCTGAAGAAGGCCTGGGCCACGGATAAGATTGTGGCTCGA
TGGGAGCAGACCACCTGGTGCAAGAAGTTGGAGGCCAAGGCGAAGCGTGC
GGCCCTCACAGACTTCGACCGTTTCAAGCTCATGGTGGCGCGTAAGGAGA
AGGCGGCGATCATCAAGAAGCACCTGAAGTAGATCTTCAGAATCAGCAGA
ACGAACGAAGAGGAAATTTGAAGGAGAGAGCGGGGAAAGGTGAAAACTGG
GCGCGTTGGTGGCATGGAGGAGGGAGAGGCTGCTTTCTTTGCTTTCCGAT
CTTGACTTTGCCTGGGTATGACATTAAACAACAATAGGAGAGGATTGGTC
TGACAAAGAAACAACACGATCAGCGGGGGTAAAACGGTTGGCAACGGACA
GACAGTTAGAAAGTGTAAGGAGAGGGGCTTGCTGTTGCCTTTATTTTGGA
GGGGAAAGGGGAGGGAGGGAGAGTGTAATTGATGTTCCTCTTCCGTGAGA
AGTTATCATTTTCTTTTTTGGTTCAGCCAGAAGAATGTATTTCTTGCATC
TTTGAGATCTAGGCGGATTGCTTTGTTGTTTGTTGTTGTGCTGCTTCTTC
TGCTGCCTCTGTCTCTGCTGCGGACGTGCGTGCGCATATTTCTCCTTTAT
AGGTTGTAGTGGTGGTGGGAATGATTGTTGTTGTCGTTGCTGCTGTCGTT
GTCGTTGCTGCTGTCGTTGTCGCTGATGATGGCGT

protein sequence of jgi.p|Nanoce1779_2|593589

>mRNA_6046-protein ID=mRNA_6046-protein|Name=jgi.p|Nanoce1779_2|593589|organism=Nannochloropsis oceanica|type=polypeptide|length=131bp
MVQLFTRFVEVGRVVLVNYGPDYGKLATVIDVVDGNKVLVEGPDSNVTRQ
VIPLKRVYLTDLKVKIPRNARAKTLKKAWATDKIVARWEQTTWCKKLEAK
AKRAALTDFDRFKLMVARKEKAAIIKKHLK*

mRNA from alignment at scaffold_14:396912..398356+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6046 ID=mRNA_6046|Name=jgi.p|Nanoce1779_2|593589|organism=Nannochloropsis oceanica|type=mRNA|length=1445bp|location=Sequence derived from alignment at scaffold_14:396912..398356+ (Nannochloropsis oceanica)
ACAGTTCAATACGCCGTTGCTTCCTTCAGGACATTTACAATGGTTCAGGT
AAGCGGGCGACAAAGGGAATGGTGGAGGAAGAAAAGCTGGATAGGCCGGA
GGAGGGGGGAGGCGAGAAGAAAGGAGGGGGGACAGTCATGTATGACGAAT
GCTATCCGTACGACAACCCATCATCTCCCTCCCCACATTACAACACAGTT
GTTCACACGATTTGTGGAGGTCGGCCGGGTAGTGCTAGTGAACTATGGCC
CCGACTATGGCAAGCTGGCCACCGTCATCGACGTGGTGGATGGCAACAAG
GTGCGTGAGAGATAGTGGAGCGGGTGCAGAGGTTAAGTGATGAATGAGGA
GGGTGTATGGTGCGAGCAATTTTATATTGGCGGCTTATGGGAGCGAGGAT
ATGGAGTGCAATATCTCCTTTCTCTGCCTTAAAGGCGAAGGGGGCCACGC
ACACAAGGGCAAAAGTGCTGTCATATTACCCCTTTGTGTCAGGCGCGTAC
GTGAAGGTGCATATTTTGCCCCTCTTATTAGTCCACTTATGTGGCATATC
ACCCCTCCAACCTCCATCTCTTCCCCCTCCTCCCCCCTCCTCTCCTTCCC
GCCCCCTCAGGTCCTTGTGGAAGGCCCCGACTCGAACGTGACCCGGCAAG
TCATTCCTTTGAAGCGTGTCTACCTTACGGACTTGAAGGTGAAGATCCCC
CGTAATGCGCGTGCCAAGACTCTGAAGAAGGCCTGGGCCACGGATAAGAT
TGTGGCTCGATGGGAGCAGACCACCTGGTGCAAGAAGTTGGAGGCCAAGG
CGAAGCGTGCGGCCCTCACAGACTTCGACCGTTTCAAGCTCATGGTGGCG
CGTAAGGAGAAGGCGGCGATCATCAAGAAGCACCTGAAGTAGATCTTCAG
AATCAGCAGAACGAACGAAGAGGAAATTTGAAGGAGAGAGCGGGGAAAGG
TGAAAACTGGGCGCGTTGGTGGCATGGAGGAGGGAGAGGCTGCTTTCTTT
GCTTTCCGATCTTGACTTTGCCTGGGTATGACATTAAACAACAATAGGAG
AGGATTGGTCTGACAAAGAAACAACACGATCAGCGGGGGTAAAACGGTTG
GCAACGGACAGACAGTTAGAAAGTGTAAGGAGAGGGGCTTGCTGTTGCCT
TTATTTTGGAGGGGAAAGGGGAGGGAGGGAGAGTGTAATTGATGTTCCTC
TTCCGTGAGAAGTTATCATTTTCTTTTTTGGTTCAGCCAGAAGAATGTAT
TTCTTGCATCTTTGAGATCTAGGCGGATTGCTTTGTTGTTTGTTGTTGTG
CTGCTTCTTCTGCTGCCTCTGTCTCTGCTGCGGACGTGCGTGCGCATATT
TCTCCTTTATAGGTTGTAGTGGTGGTGGGAATGATTGTTGTTGTCGTTGC
TGCTGTCGTTGTCGTTGCTGCTGTCGTTGTCGCTGATGATGGCGT

Coding sequence (CDS) from alignment at scaffold_14:396912..398356+

>mRNA_6046 ID=mRNA_6046|Name=jgi.p|Nanoce1779_2|593589|organism=Nannochloropsis oceanica|type=CDS|length=1179bp|location=Sequence derived from alignment at scaffold_14:396912..398356+ (Nannochloropsis oceanica)
ATGGTTCAGTTGTTCACACGATTTGTGGAGGTCGGCCGGGTAGTGCTAGT
GAACTATGGCCCCGACTATGGCAAGCTGGCCACCGTCATCGACGTGGTGG
ATGGCAACAAGGTCCTTGTGGAAGGCCCCGACTCGAACGTGACCCGGCAA
GTCATTCCTTTGAAGCGTGTCTACCTTACGGACTTGAAGGTGAAGATCCC
CCGTAATGCGCGTGCCAAGACTCTGAAGAAGGCCTGGGCCACGGATAAGA
TTGTGGCTCGATGGGAGCAGACCACCTGGTGCAAGAAGTTGGAGGCCAAG
GCGAAGCGTGCGGCCCTCACAGACTTCGACCGTTTCAAGCTCATGGTGGC
GCGTAAGGAGAAGGCGGCGATCATCAAGAAGCACCTGAAGTAGATGGTTC
AGTTGTTCACACGATTTGTGGAGGTCGGCCGGGTAGTGCTAGTGAACTAT
GGCCCCGACTATGGCAAGCTGGCCACCGTCATCGACGTGGTGGATGGCAA
CAAGGTCCTTGTGGAAGGCCCCGACTCGAACGTGACCCGGCAAGTCATTC
CTTTGAAGCGTGTCTACCTTACGGACTTGAAGGTGAAGATCCCCCGTAAT
GCGCGTGCCAAGACTCTGAAGAAGGCCTGGGCCACGGATAAGATTGTGGC
TCGATGGGAGCAGACCACCTGGTGCAAGAAGTTGGAGGCCAAGGCGAAGC
GTGCGGCCCTCACAGACTTCGACCGTTTCAAGCTCATGGTGGCGCGTAAG
GAGAAGGCGGCGATCATCAAGAAGCACCTGAAGTAGATGGTTCAGTTGTT
CACACGATTTGTGGAGGTCGGCCGGGTAGTGCTAGTGAACTATGGCCCCG
ACTATGGCAAGCTGGCCACCGTCATCGACGTGGTGGATGGCAACAAGGTC
CTTGTGGAAGGCCCCGACTCGAACGTGACCCGGCAAGTCATTCCTTTGAA
GCGTGTCTACCTTACGGACTTGAAGGTGAAGATCCCCCGTAATGCGCGTG
CCAAGACTCTGAAGAAGGCCTGGGCCACGGATAAGATTGTGGCTCGATGG
GAGCAGACCACCTGGTGCAAGAAGTTGGAGGCCAAGGCGAAGCGTGCGGC
CCTCACAGACTTCGACCGTTTCAAGCTCATGGTGGCGCGTAAGGAGAAGG
CGGCGATCATCAAGAAGCACCTGAAGTAG

Synonyms

Publications