jgi.p|Nanoce1779_2|593590, mRNA_6047 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|593590
Unique NamemRNA_6047
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1004
Alignment locationscaffold_14:398297..399300 -

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Properties
Property NameValue
TranscriptId593676
TrackFilteredModels2
ProteinId593590
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:398297..399300 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593590gene_6047Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|593590mRNA_6047-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6047CDS_6047Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6047 ID=mRNA_6047|Name=jgi.p|Nanoce1779_2|593590|organism=Nannochloropsis oceanica|type=mRNA|length=1004bp
GGGGAGAGGTGTTGCGAGGGCCGATACGGAGAGGGGTGGAGGAGAGTGGG
GCCGTGGACTTGCTTGTGGATGGGGAGGCTGCAGTAGCGGTTGCTGTGCT
TGCATGGATGGAAAAAACGCCCTACGCCTCGGCGTGGTCGGCCTTGGCGG
CTCAGAGGACGAGGGAGGAGGAGGCAAAGATAAGCGCGAGAAGGGAAGGA
AATGCATTGTTGTGGAAGGGATACGAGAGTGTGAACGCGTGGGTGGAGCG
GGTGCCAGTGTCGAGAAGTGTGGAGAGGCCGTGGCGGTGGTTGGCCCACA
CGTGGGAGAGTGTCGGAAGGCGACTACGATGGTTAATCAAGGGGGGTGTG
ACAGCCAGGGATGCCCTGGAGGAGTATAAGGTTGTGGTACTCGTGCACGA
CGCAGATTCGGCAAGACTGGGACAAAGAATGAAAATGAAGGAGCTACTGC
AGGGGGCGGGATGGGATGTGTGGGGTCCAGGAACGTCTGCTTCGAGGTTG
GTAAGGGATAAGGATGCCCTTGTGCCTGTATTAGTATTTTGCCAGGATGA
TGCAACGACCTTGGAGAGGGCGAGGTTCCTGGTCCGGGCTGGAAGGCCCT
CACAGTTGACGTGTGCGTTGCTGGAGGATCCTGAGAGTGCTTGTCCGTGG
TTGGGGAAGGGAGGGAGGAATGAAGGGGGAGGCGATGACCGACCGACTGT
GTTGAGTATTGCGGACGTGCATGATAGTTTGTTTGCCTTTGTGAGAGCGA
GGGTGAGGGAAGGCAGAGGAATCGGGGAGATTCAGAGAGAGTTGGATGCG
TCGACGCGCCTGTGTCCGGCTTCGTCTTCGTCAGCTTCTCCGACTTACAG
GTAGCACTGGGGAAAGAGGGTGGAGGGAAGGAAGGAGGGGAGGAGAAAGA
GAAGAGCCCAATGTATGATAAATGATTAGTACTCGGATGGAATGACGCCA
TCATCAGCGACAACGACAGCAGCAACGACAACGACAGCAGCAACGACAAC
AACA
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protein sequence of jgi.p|Nanoce1779_2|593590

>mRNA_6047-protein ID=mRNA_6047-protein|Name=jgi.p|Nanoce1779_2|593590|organism=Nannochloropsis oceanica|type=polypeptide|length=249bp
MEKTPYASAWSALAAQRTREEEAKISARREGNALLWKGYESVNAWVERVP
VSRSVERPWRWLAHTWESVGRRLRWLIKGGVTARDALEEYKVVVLVHDAD
SARLGQRMKMKELLQGAGWDVWGPGTSASRLVRDKDALVPVLVFCQDDAT
TLERARFLVRAGRPSQLTCALLEDPESACPWLGKGGRNEGGGDDRPTVLS
IADVHDSLFAFVRARVREGRGIGEIQRELDASTRLCPASSSSASPTYR*
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mRNA from alignment at scaffold_14:398297..399300-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6047 ID=mRNA_6047|Name=jgi.p|Nanoce1779_2|593590|organism=Nannochloropsis oceanica|type=mRNA|length=1004bp|location=Sequence derived from alignment at scaffold_14:398297..399300- (Nannochloropsis oceanica)
GGGGAGAGGTGTTGCGAGGGCCGATACGGAGAGGGGTGGAGGAGAGTGGG
GCCGTGGACTTGCTTGTGGATGGGGAGGCTGCAGTAGCGGTTGCTGTGCT
TGCATGGATGGAAAAAACGCCCTACGCCTCGGCGTGGTCGGCCTTGGCGG
CTCAGAGGACGAGGGAGGAGGAGGCAAAGATAAGCGCGAGAAGGGAAGGA
AATGCATTGTTGTGGAAGGGATACGAGAGTGTGAACGCGTGGGTGGAGCG
GGTGCCAGTGTCGAGAAGTGTGGAGAGGCCGTGGCGGTGGTTGGCCCACA
CGTGGGAGAGTGTCGGAAGGCGACTACGATGGTTAATCAAGGGGGGTGTG
ACAGCCAGGGATGCCCTGGAGGAGTATAAGGTTGTGGTACTCGTGCACGA
CGCAGATTCGGCAAGACTGGGACAAAGAATGAAAATGAAGGAGCTACTGC
AGGGGGCGGGATGGGATGTGTGGGGTCCAGGAACGTCTGCTTCGAGGTTG
GTAAGGGATAAGGATGCCCTTGTGCCTGTATTAGTATTTTGCCAGGATGA
TGCAACGACCTTGGAGAGGGCGAGGTTCCTGGTCCGGGCTGGAAGGCCCT
CACAGTTGACGTGTGCGTTGCTGGAGGATCCTGAGAGTGCTTGTCCGTGG
TTGGGGAAGGGAGGGAGGAATGAAGGGGGAGGCGATGACCGACCGACTGT
GTTGAGTATTGCGGACGTGCATGATAGTTTGTTTGCCTTTGTGAGAGCGA
GGGTGAGGGAAGGCAGAGGAATCGGGGAGATTCAGAGAGAGTTGGATGCG
TCGACGCGCCTGTGTCCGGCTTCGTCTTCGTCAGCTTCTCCGACTTACAG
GTAGCACTGGGGAAAGAGGGTGGAGGGAAGGAAGGAGGGGAGGAGAAAGA
GAAGAGCCCAATGTATGATAAATGATTAGTACTCGGATGGAATGACGCCA
TCATCAGCGACAACGACAGCAGCAACGACAACGACAGCAGCAACGACAAC
AACA
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Coding sequence (CDS) from alignment at scaffold_14:398297..399300-

>mRNA_6047 ID=mRNA_6047|Name=jgi.p|Nanoce1779_2|593590|organism=Nannochloropsis oceanica|type=CDS|length=747bp|location=Sequence derived from alignment at scaffold_14:398297..399300- (Nannochloropsis oceanica)
ATGGAAAAAACGCCCTACGCCTCGGCGTGGTCGGCCTTGGCGGCTCAGAG
GACGAGGGAGGAGGAGGCAAAGATAAGCGCGAGAAGGGAAGGAAATGCAT
TGTTGTGGAAGGGATACGAGAGTGTGAACGCGTGGGTGGAGCGGGTGCCA
GTGTCGAGAAGTGTGGAGAGGCCGTGGCGGTGGTTGGCCCACACGTGGGA
GAGTGTCGGAAGGCGACTACGATGGTTAATCAAGGGGGGTGTGACAGCCA
GGGATGCCCTGGAGGAGTATAAGGTTGTGGTACTCGTGCACGACGCAGAT
TCGGCAAGACTGGGACAAAGAATGAAAATGAAGGAGCTACTGCAGGGGGC
GGGATGGGATGTGTGGGGTCCAGGAACGTCTGCTTCGAGGTTGGTAAGGG
ATAAGGATGCCCTTGTGCCTGTATTAGTATTTTGCCAGGATGATGCAACG
ACCTTGGAGAGGGCGAGGTTCCTGGTCCGGGCTGGAAGGCCCTCACAGTT
GACGTGTGCGTTGCTGGAGGATCCTGAGAGTGCTTGTCCGTGGTTGGGGA
AGGGAGGGAGGAATGAAGGGGGAGGCGATGACCGACCGACTGTGTTGAGT
ATTGCGGACGTGCATGATAGTTTGTTTGCCTTTGTGAGAGCGAGGGTGAG
GGAAGGCAGAGGAATCGGGGAGATTCAGAGAGAGTTGGATGCGTCGACGC
GCCTGTGTCCGGCTTCGTCTTCGTCAGCTTCTCCGACTTACAGGTAG
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Synonyms
Publications