jgi.p|Nanoce1779_2|557241, mRNA_6335 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|557241
Unique NamemRNA_6335
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1402
Alignment locationscaffold_15:371585..373161 -

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Properties
Property NameValue
TranscriptId557327
TrackFilteredModels2
ProteinId557241
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:371585..373161 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|557241gene_6335Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|557241mRNA_6335-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6335CDS_6335Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6335 ID=mRNA_6335|Name=jgi.p|Nanoce1779_2|557241|organism=Nannochloropsis oceanica|type=mRNA|length=1402bp
ACAGCCTCCATCCTCGACGTGCATGCGTCTGATCAATCCTGGAGTCGTGG
GAGCAGTCGCCATGGAAGCGCTAGTCGACAAGTTGCGAGGGGCCTTGTGG
GGTTCGCTTGTGGGGGACGCGCTTGCCATGCCGGTCCACTGGTACTACGA
CCAACGCCAGCTCCAACGGGATTTTGGTACCATTACAGACTATAATGCGC
CCAAAGCAACTTTTGCCGGCTCCATCATGAATCTAAGTAACACAGGTGGG
GGTGGTCGCGGGAGCGACAAGGGAGACATAATCGGAGATGTCATAAATCA
CGGCAAGCGAAAGTTTTGGCTGAGAGGCGGCCAGTTCCATTACCACCACG
GACTCAAGGCAGGGGAAGGCACCCTCGAAGCCTCCCTCGAACGACTACTC
CTCCGAAGCATGAACAAAAACGACGGACGGTTCAATAAAGACGACTATCT
CTCTGCTTACATCAGCTTCATGACCACTCCAAACAGTCACAACGACGTGT
ATGCCGGGACCTGTCATCGAATGTTTTTCGCGAACCATGTCAAAGGGAAA
GACCCCAACCATTGCGCCGACAATGATGGTCACAACGTCGACACTATCGA
TGCCCTAGTCCCACTCATCCCTATCGCCGTCTCCCATCTCCCCTCTTCCT
CGTCCTCGAGCAACAGCGCAACAGCGGCGTTGAAAAAGGACATCTTTGAT
GCCATTAACATGAATCGGAAATCGCCTTCTCTCCTGCCCCGATACGGGGA
AGTCTACGTAGGCATCGTCCACGCCTCTCTCCTTGGGCGAAATCTGCAGG
AGACATGCGAGAAAGCAGGGGCGGCGCTTGGTCTGAACGTGAAACGAATG
ATGCAAAACACCAGAGAAGATCCGATGTGTGCCTGTTACATTGATTCTTC
TTTCCCTACACTATTATATTATTTACACAAGTACGGAGAGAACTCTCCAG
AGGAGGCCCTGATTAGATCGACGAATGCAGGAGGGGAGAATGTAGCCCGA
GGGGCTTTGCTCGGTGCAGTTTTAGGAGCGAGGCACGGGCTGGAGAAGCT
GCCGAACCGGTGGGTGGAGGGATTGGTGGGTGAGAAGGAGATTCGAAAGG
AAGTGAATGTGTTTGTAGACTTGGCGGTGAAAAACGCGGGAAGAGGAGGG
AGGGAGGGAGGTGGGGTCTGTGCCCAGGGGTAGGGGTGAAGCATGAGTGG
GTGAGGAGTATGATGAGCTGAAAAGAATATATGAGTAGCCAGGATTGTGT
CGTTGATTTGGCAGCCAAGGGGAGATGGAGGTGGAGGAGCGTGCAATGGG
AAAGGGAAGAAGGGTCGGAGGGAAAACTTGGTGGACGAATGGGGACATAG
AGCAAGTTATAGAAAACAACGAAGGAGAAAGAACGACTAGCGTTTCCCAT
GG
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protein sequence of jgi.p|Nanoce1779_2|557241

>mRNA_6335-protein ID=mRNA_6335-protein|Name=jgi.p|Nanoce1779_2|557241|organism=Nannochloropsis oceanica|type=polypeptide|length=387bp
MRLINPGVVGAVAMEALVDKLRGALWGSLVGDALAMPVHWYYDQRQLQRD
FGTITDYNAPKATFAGSIMNLSNTGGGGRGSDKGDIIGDVINHGKRKFWL
RGGQFHYHHGLKAGEGTLEASLERLLLRSMNKNDGRFNKDDYLSAYISFM
TTPNSHNDVYAGTCHRMFFANHVKGKDPNHCADNDGHNVDTIDALVPLIP
IAVSHLPSSSSSSNSATAALKKDIFDAINMNRKSPSLLPRYGEVYVGIVH
ASLLGRNLQETCEKAGAALGLNVKRMMQNTREDPMCACYIDSSFPTLLYY
LHKYGENSPEEALIRSTNAGGENVARGALLGAVLGARHGLEKLPNRWVEG
LVGEKEIRKEVNVFVDLAVKNAGRGGREGGGVCAQG*
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mRNA from alignment at scaffold_15:371585..373161-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6335 ID=mRNA_6335|Name=jgi.p|Nanoce1779_2|557241|organism=Nannochloropsis oceanica|type=mRNA|length=1577bp|location=Sequence derived from alignment at scaffold_15:371585..373161- (Nannochloropsis oceanica)
ACAGCCTCCATCCTCGACGTGCATGCGTCTGATCAATCCTGGAGTCGTGG
GAGCAGTCGCCATGGAAGCGCTAGTCGACAAGTTGCGAGGGGCCTTGTGG
GGTTCGCTTGTGGGGGACGCGCTTGCCATGCCGGTCCACTGGTATGTCCT
TGTAGGAGGGTAGATCACGGAGCAAGCTTTGAATTTAACATGCCAATGAT
TGTTCCAAACGTTTAGTGGGAGTCCAGATAAGCTTTTTCCGGCTGGCAAG
AATACCATGCCTGTCTCTCTGTGATTCAATCTCTTTCCTTCCCCCGCTCC
TCCCCTCTCATCACAGGTACTACGACCAACGCCAGCTCCAACGGGATTTT
GGTACCATTACAGACTATAATGCGCCCAAAGCAACTTTTGCCGGCTCCAT
CATGAATCTAAGTAACACAGGTGGGGGTGGTCGCGGGAGCGACAAGGGAG
ACATAATCGGAGATGTCATAAATCACGGCAAGCGAAAGTTTTGGCTGAGA
GGCGGCCAGTTCCATTACCACCACGGACTCAAGGCAGGGGAAGGCACCCT
CGAAGCCTCCCTCGAACGACTACTCCTCCGAAGCATGAACAAAAACGACG
GACGGTTCAATAAAGACGACTATCTCTCTGCTTACATCAGCTTCATGACC
ACTCCAAACAGTCACAACGACGTGTATGCCGGGACCTGTCATCGAATGTT
TTTCGCGAACCATGTCAAAGGGAAAGACCCCAACCATTGCGCCGACAATG
ATGGTCACAACGTCGACACTATCGATGCCCTAGTCCCACTCATCCCTATC
GCCGTCTCCCATCTCCCCTCTTCCTCGTCCTCGAGCAACAGCGCAACAGC
GGCGTTGAAAAAGGACATCTTTGATGCCATTAACATGAATCGGAAATCGC
CTTCTCTCCTGCCCCGATACGGGGAAGTCTACGTAGGCATCGTCCACGCC
TCTCTCCTTGGGCGAAATCTGCAGGAGACATGCGAGAAAGCAGGGGCGGC
GCTTGGTCTGAACGTGAAACGAATGATGCAAAACACCAGAGAAGATCCGA
TGTGTGCCTGTTACATTGATTCTTCTTTCCCTACACTATTATATTATTTA
CACAAGTACGGAGAGAACTCTCCAGAGGAGGCCCTGATTAGATCGACGAA
TGCAGGAGGGGAGAATGTAGCCCGAGGGGCTTTGCTCGGTGCAGTTTTAG
GAGCGAGGCACGGGCTGGAGAAGCTGCCGAACCGGTGGGTGGAGGGATTG
GTGGGTGAGAAGGAGATTCGAAAGGAAGTGAATGTGTTTGTAGACTTGGC
GGTGAAAAACGCGGGAAGAGGAGGGAGGGAGGGAGGTGGGGTCTGTGCCC
AGGGGTAGGGGTGAAGCATGAGTGGGTGAGGAGTATGATGAGCTGAAAAG
AATATATGAGTAGCCAGGATTGTGTCGTTGATTTGGCAGCCAAGGGGAGA
TGGAGGTGGAGGAGCGTGCAATGGGAAAGGGAAGAAGGGTCGGAGGGAAA
ACTTGGTGGACGAATGGGGACATAGAGCAAGTTATAGAAAACAACGAAGG
AGAAAGAACGACTAGCGTTTCCCATGG
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Coding sequence (CDS) from alignment at scaffold_15:371585..373161-

>mRNA_6335 ID=mRNA_6335|Name=jgi.p|Nanoce1779_2|557241|organism=Nannochloropsis oceanica|type=CDS|length=2322bp|location=Sequence derived from alignment at scaffold_15:371585..373161- (Nannochloropsis oceanica)
GTACTACGACCAACGCCAGCTCCAACGGGATTTTGGTACCATTACAGACT
ATAATGCGCCCAAAGCAACTTTTGCCGGCTCCATCATGAATCTAAGTAAC
ACAGGTGGGGGTGGTCGCGGGAGCGACAAGGGAGACATAATCGGAGATGT
CATAAATCACGGCAAGCGAAAGTTTTGGCTGAGAGGCGGCCAGTTCCATT
ACCACCACGGACTCAAGGCAGGGGAAGGCACCCTCGAAGCCTCCCTCGAA
CGACTACTCCTCCGAAGCATGAACAAAAACGACGGACGGTTCAATAAAGA
CGACTATCTCTCTGCTTACATCAGCTTCATGACCACTCCAAACAGTCACA
ACGACGTGTATGCCGGGACCTGTCATCGAATGTTTTTCGCGAACCATGTC
AAAGGGAAAGACCCCAACCATTGCGCCGACAATGATGGTCACAACGTCGA
CACTATCGATGCCCTAGTCCCACTCATCCCTATCGCCGTCTCCCATCTCC
CCTCTTCCTCGTCCTCGAGCAACAGCGCAACAGCGGCGTTGAAAAAGGAC
ATCTTTGATGCCATTAACATGAATCGGAAATCGCCTTCTCTCCTGCCCCG
ATACGGGGAAGTCTACGTAGGCATCGTCCACGCCTCTCTCCTTGGGCGAA
ATCTGCAGGAGACATGCGAGAAAGCAGGGGCGGCGCTTGGTCTGAACGTG
AAACGAATGATGCAAAACACCAGAGAAGATCCGATGTGTGCCTGTTACAT
TGATTCTTCTTTCCCTACACTATTATATTATTTACACAAGTACGGAGAGA
ACTCTCCAGAGGAGGCCCTGATTAGATCGACGAATGCAGGAGGGGAGAAT
GTAGCCCGAGGGGCTTTGCTCGGTGCAGTTTTAGGAGCGAGGCACGGGCT
GGAGAAGCTGCCGAACCGGTGGGTGGAGGGATTGGTGGGTGAGAAGGAGA
TTCGAAAGGAAGTGAATGTGTTTGTAGACTTGGCGGTGAAAAACGCGGGA
AGAGGAGGGAGGGAGGGAGGTGGGGTCTGTGCCCAGGGGTAGATGCGTCT
GATCAATCCTGGAGTCGTGGGAGCAGTCGCCATGGAAGCGCTAGTCGACA
AGTTGCGAGGGGCCTTGTGGGGTTCGCTTGTGGGGGACGCGCTTGCCATG
CCGGTCCACTGGTACTACGACCAACGCCAGCTCCAACGGGATTTTGGTAC
CATTACAGACTATAATGCGCCCAAAGCAACTTTTGCCGGCTCCATCATGA
ATCTAAGTAACACAGGTGGGGGTGGTCGCGGGAGCGACAAGGGAGACATA
ATCGGAGATGTCATAAATCACGGCAAGCGAAAGTTTTGGCTGAGAGGCGG
CCAGTTCCATTACCACCACGGACTCAAGGCAGGGGAAGGCACCCTCGAAG
CCTCCCTCGAACGACTACTCCTCCGAAGCATGAACAAAAACGACGGACGG
TTCAATAAAGACGACTATCTCTCTGCTTACATCAGCTTCATGACCACTCC
AAACAGTCACAACGACGTGTATGCCGGGACCTGTCATCGAATGTTTTTCG
CGAACCATGTCAAAGGGAAAGACCCCAACCATTGCGCCGACAATGATGGT
CACAACGTCGACACTATCGATGCCCTAGTCCCACTCATCCCTATCGCCGT
CTCCCATCTCCCCTCTTCCTCGTCCTCGAGCAACAGCGCAACAGCGGCGT
TGAAAAAGGACATCTTTGATGCCATTAACATGAATCGGAAATCGCCTTCT
CTCCTGCCCCGATACGGGGAAGTCTACGTAGGCATCGTCCACGCCTCTCT
CCTTGGGCGAAATCTGCAGGAGACATGCGAGAAAGCAGGGGCGGCGCTTG
GTCTGAACGTGAAACGAATGATGCAAAACACCAGAGAAGATCCGATGTGT
GCCTGTTACATTGATTCTTCTTTCCCTACACTATTATATTATTTACACAA
GTACGGAGAGAACTCTCCAGAGGAGGCCCTGATTAGATCGACGAATGCAG
GAGGGGAGAATGTAGCCCGAGGGGCTTTGCTCGGTGCAGTTTTAGGAGCG
AGGCACGGGCTGGAGAAGCTGCCGAACCGGTGGGTGGAGGGATTGGTGGG
TGAGAAGGAGATTCGAAAGGAAGTGAATGTGTTTGTAGACTTGGCGGTGA
AAAACGCGGGAAGAGGAGGGAGGGAGGGAGGTGGGGTCTGTGCCCAGGGG
TAGATGCGTCTGATCAATCCTGGAGTCGTGGGAGCAGTCGCCATGGAAGC
GCTAGTCGACAAGTTGCGAGGGGCCTTGTGGGGTTCGCTTGTGGGGGACG
CGCTTGCCATGCCGGTCCACTG
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Synonyms
Publications