jgi.p|Nanoce1779_2|101125, mRNA_7052 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|101125
Unique NamemRNA_7052
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length484
Alignment locationscaffold_16:167933..168416 +

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Properties
Property NameValue
TranscriptId101211
TrackFilteredModels2
ProteinId101125
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:167933..168416 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|101125gene_7052Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|101125mRNA_7052-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7052CDS_7052Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7052 ID=mRNA_7052|Name=jgi.p|Nanoce1779_2|101125|organism=Nannochloropsis oceanica|type=mRNA|length=484bp
GAACAAAGGATGGATAGGGAGGCGAAAGTGAAGACATCTCGACAGTGAGA
TGCACGGTCCATGTGAGGGTGTAACATCCCCACCATGAAGTCCGTCCGTA
CTGGTGTTGGTTTGTATTTCGTTTTACCGTGCTTGTTTTTTTTTTCTCAT
TTTGTTTTGTTTTCTTTCGTTTTGTTTCGTTTCGTTTTGTCGGCAATATT
TGTTGATTGGTGCGCCTGTGCGCCTCCTCTCTCGCTCTTAACCTTTGAGA
GGCTTGATTCTGTCTTCTGTCCCCTCTCCCGCGCGTCCCGTCGTCACGCG
TTCAGTCATCGCAGCTTCCTGCATCTGTCAGACAGGCTATAATCTACCCT
TCCGCCACTTGTTTATCACTACTGCTGTCGCTGTTGCTGCTACTGCTGCT
ATATCTGGTTTGCCCCGCCTGTCTGCCTATCCAAGCCTACGCAGGCTCCC
CAAAAACCAAGTTCTCTATCTGTTTATCTCTACA
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protein sequence of jgi.p|Nanoce1779_2|101125

>mRNA_7052-protein ID=mRNA_7052-protein|Name=jgi.p|Nanoce1779_2|101125|organism=Nannochloropsis oceanica|type=polypeptide|length=86bp
MKSVRTGVGLYFVLPCLFFFSHFVLFSFVLFRFVLSAIFVDWCACAPPLS
LLTFERLDSVFCPLSRASRRHAFSHRSFLHLSDRL*
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mRNA from alignment at scaffold_16:167933..168416+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7052 ID=mRNA_7052|Name=jgi.p|Nanoce1779_2|101125|organism=Nannochloropsis oceanica|type=mRNA|length=484bp|location=Sequence derived from alignment at scaffold_16:167933..168416+ (Nannochloropsis oceanica)
GAACAAAGGATGGATAGGGAGGCGAAAGTGAAGACATCTCGACAGTGAGA
TGCACGGTCCATGTGAGGGTGTAACATCCCCACCATGAAGTCCGTCCGTA
CTGGTGTTGGTTTGTATTTCGTTTTACCGTGCTTGTTTTTTTTTTCTCAT
TTTGTTTTGTTTTCTTTCGTTTTGTTTCGTTTCGTTTTGTCGGCAATATT
TGTTGATTGGTGCGCCTGTGCGCCTCCTCTCTCGCTCTTAACCTTTGAGA
GGCTTGATTCTGTCTTCTGTCCCCTCTCCCGCGCGTCCCGTCGTCACGCG
TTCAGTCATCGCAGCTTCCTGCATCTGTCAGACAGGCTATAATCTACCCT
TCCGCCACTTGTTTATCACTACTGCTGTCGCTGTTGCTGCTACTGCTGCT
ATATCTGGTTTGCCCCGCCTGTCTGCCTATCCAAGCCTACGCAGGCTCCC
CAAAAACCAAGTTCTCTATCTGTTTATCTCTACA
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Coding sequence (CDS) from alignment at scaffold_16:167933..168416+

>mRNA_7052 ID=mRNA_7052|Name=jgi.p|Nanoce1779_2|101125|organism=Nannochloropsis oceanica|type=CDS|length=258bp|location=Sequence derived from alignment at scaffold_16:167933..168416+ (Nannochloropsis oceanica)
ATGAAGTCCGTCCGTACTGGTGTTGGTTTGTATTTCGTTTTACCGTGCTT
GTTTTTTTTTTCTCATTTTGTTTTGTTTTCTTTCGTTTTGTTTCGTTTCG
TTTTGTCGGCAATATTTGTTGATTGGTGCGCCTGTGCGCCTCCTCTCTCG
CTCTTAACCTTTGAGAGGCTTGATTCTGTCTTCTGTCCCCTCTCCCGCGC
GTCCCGTCGTCACGCGTTCAGTCATCGCAGCTTCCTGCATCTGTCAGACA
GGCTATAA
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Synonyms
Publications