jgi.p|Nanoce1779_2|595680, mRNA_7121 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|595680
Unique Name	mRNA_7121
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2306
Alignment location	scaffold_16:334038..336561 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	595766
Track	FilteredModels2
ProteinId	595680

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_16	supercontig	scaffold_16:334038..336561 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|595680	gene_7121	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|595680	mRNA_7121-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7121	CDS_7121	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_16:334038..336561+
coding sequence from alignment at scaffold_16:334038..336561+

mRNA sequence

>mRNA_7121 ID=mRNA_7121|Name=jgi.p|Nanoce1779_2|595680|organism=Nannochloropsis oceanica|type=mRNA|length=2306bp
TATATCCAGGTTACAATGAGCTTAAATCATGATGTTACAAAGAGCAGCTC
AATTAACGTTGCCGTGTAGACCATGGGTTATAAATGTGCGTGGCTTTCCT
GCGGCCCCTCGGCCCTCGTAGCTACTTTTATGTCCCATTCCTTCTTTGAT
CATGGCCATCTCAACTCCGAAACCAACAAACCCACACAATTCATTGACAC
GAGTACAGTACCTCAAACGCACGCTGGGACATCCCCTTTTTGTGCCATCA
ACGGTCCGCCGAACTGGCAGCACACACTCCCTTCAATCCCTCTTCCTAGC
TGTAGAAAAAATGCCCTCCGCTTCCGACAATAAAGGACTCTTCATGCTCC
TCCCAGACGGACCCGTTTGGAGGAGCTCGGATGTCAAATCTATGCAAGGC
TTTATGGAAGAGTTTAATCTTCGCGCTGATGAGAGTGACATGCCGCAGCT
TATGTGCGCTTTTGAAAAGCTTGTCGACACGTTGGGTATTGAGACATGCA
CTCAGGCCCTAGATCGAGTCAAAGAGCAACGCCTGCAACAGCAGCTGCAG
CGCCTACCAGGCTACCAGAGCAATATCAGTAACACCACAGCTTCCAGTAT
CTCCGCTTATTCAAGTCGCACCATGGCAGACGACACGCGCCACGAGGAAA
ACCATCGGGCCCACGCAGGCAAATCCATGGAAGCAGCTGAGACGCTGCAA
ACTCTGATGAAACATCACGTAGGAGGAAAGGGCTTTCTTTTACCTGGGGC
GGCAGACGTGCGGGAAGAGATACAGGGCGGGAAGGATGGTGGTGGCGGTG
GTGGTAGCGGTGTTGGTAGCGGTGGCGGTGGTACGGATGCATTTCACTCC
GTGACCGCGTCTAGTGTAGGCAGTCCTTCTCATTCCCTTTCGCTCTCGCC
GCCAGGAAACAGCAACAACATAAACAACACCGATGTCATGGACTTGCTGC
CGCTGCAGTCACAAGCTACCTTGTTCTGTCAAAGCCAAGACTCTTCACCT
GGCGCCTTTACTAATACTACTAGCACGACAGCTCTAATCAGTAGCAGTAG
TAGCGATTGCAAGAGTAGCAATATGTCTGCCCATGTGATTCCACCTGCCT
CACTGTCCTGGTCCCCCAACGCCGTCCCCCTCCCCCCGGGGCAAGCCCCT
ACCAACCGGATGCCTATCCCCAACATCTTGGGACAGACAAGGCCTACGGC
AGGGGAAAAGAGTACAGAAACCATTTCTAATCTTCCTTACATTAAGCCAG
AGGTCTCTTCGCCTGCATCAGCGAGTCGAAAACGCGCGCGCTCCTCCGCA
TCCTCCTCGACCACGTTACCGGCTCCAGCGACAGCAACTGCAACGGCACC
AGCAGCACCACCACTCACCACATCTACCGCCACCGGAGTGGAGGACGGCT
ACATCCCAACCCCCCGCAATGATGGTCCGTGGCACTACCTCGGTACTTTG
CCCGCATCATCCACCTCTTTTTCCTCTGCCGCTGACGGTGGTGGGGGAGA
TGGAAGTAGAGATGGAGGGAAATCGACCAGCGGCGAAGCTGCAGCTGCAG
CTGGAGCATCAACCAGCAGTGTTAGAGCCTCAAGTGCCGGGAGTGATGAA
GAAGGAACAAAGGCTAGACCTGCCGCCATGAACTTTGGGAGATACGGCGA
TCACTTGCCATACAGCGGCCGCAAGGTGTGTCGAGTCAAGGGTTGCGATG
GGCACCAGCGGTGGCCGGACTACTTATGCGGGCAGCATGGGGGGGGGCGA
TGCCGGTGGGAGGGCTGCTCACTATTTCATCAGGGAATCAATAGCATGGG
CTTGCTCTTGTGTGGCAAGCACTGCAAGGCCGTTGGTGCGGCGTATCGCC
GCCCGCGTAGTGGGGGAAATCCGAAGGCAGATGGGGGCGGAGGTGGCGGA
GGTGCCAGGGATGGCACTGTCAGCAGCAGTACCACCTGCAAGCAAAAGTA
GAACACGTGTGGTAGAGGTGGGAAAGGCAAGGGGGCTTCAGGTACGGTTG
GGCCTGGCCTTCTGTATATGTGTGTATCACAAAAAACATTTTCACCTGCA
TGTCCTTATACTTGTTTTGGAACCAAAACTGTCGACTTAAACAAGCCAAA
CTCAAATGGAAATGGTCGTAAAGAAACAAAAATCAAACCCACGCGAAAGC
GACAAGCAAGGCTGAAAAGACAGTCATGAAGACACAATCAGATAGCGGAC
GCAGCAAACAGAGAAGCAGACAACACAATTTGACTCTGGCCCTTCGCCTC
TTTCTCGCCCATCTTCCTATCAGACAAAAGCTGCAATTTTCAAAAGTAAA
TGAGAG

protein sequence of jgi.p|Nanoce1779_2|595680

>mRNA_7121-protein ID=mRNA_7121-protein|Name=jgi.p|Nanoce1779_2|595680|organism=Nannochloropsis oceanica|type=polypeptide|length=600bp
MAISTPKPTNPHNSLTRVQYLKRTLGHPLFVPSTVRRTGSTHSLQSLFLA
VEKMPSASDNKGLFMLLPDGPVWRSSDVKSMQGFMEEFNLRADESDMPQL
MCAFEKLVDTLGIETCTQALDRVKEQRLQQQLQRLPGYQSNISNTTASSI
SAYSSRTMADDTRHEENHRAHAGKSMEAAETLQTLMKHHVGGKGFLLPGA
ADVREEIQGGKDGGGGGGSGVGSGGGGTDAFHSVTASSVGSPSHSLSLSP
PGNSNNINNTDVMDLLPLQSQATLFCQSQDSSPGAFTNTTSTTALISSSS
SDCKSSNMSAHVIPPASLSWSPNAVPLPPGQAPTNRMPIPNILGQTRPTA
GEKSTETISNLPYIKPEVSSPASASRKRARSSASSSTTLPAPATATATAP
AAPPLTTSTATGVEDGYIPTPRNDGPWHYLGTLPASSTSFSSAADGGGGD
GSRDGGKSTSGEAAAAAGASTSSVRASSAGSDEEGTKARPAAMNFGRYGD
HLPYSGRKVCRVKGCDGHQRWPDYLCGQHGGGRCRWEGCSLFHQGINSMG
LLLCGKHCKAVGAAYRRPRSGGNPKADGGGGGGGARDGTVSSSTTCKQK*

mRNA from alignment at scaffold_16:334038..336561+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7121 ID=mRNA_7121|Name=jgi.p|Nanoce1779_2|595680|organism=Nannochloropsis oceanica|type=mRNA|length=2524bp|location=Sequence derived from alignment at scaffold_16:334038..336561+ (Nannochloropsis oceanica)
TATATCCAGGTTACAATGAGCTTAAATCATGATGTTACAAAGAGCAGCTC
AATTAACGTTGCCGTGTAGACCATGGGTTATAAATGTGCGTGGCTTTCCT
GCGGCCCCTCGGCCCTCGTAGCTACTTTTATGTCCCATTCCTTCTTTGAT
CATGGCCATCTCAACTCCGAAACCAACAAACCCACACAATTCATTGACAC
GAGTACAGTACCTCAAACGCACGCTGGGACATCCCCTTTTTGTGCCATCA
ACGGTCCGCCGAACTGGCAGCACACACTCCCTTCAATCCCTCTTCCTAGC
TGTAGAAAAAATGCCCTCCGCTTCCGACAATAAAGGACTCTTCATGCTCC
TCCCAGACGGACCCGTTTGGAGGAGCTCGGATGTCAAATCTATGCAAGGC
TTTATGGAAGAGTTTAATCTTCGCGCTGATGAGAGTGACATGCCGCAGCT
TATGTGCGCTTTTGAAAAGCTTGTCGACACGTTGGGTATTGAGACATGCA
CTCAGGCCCTAGATCGAGTCAAAGAGCAACGCCTGCAACAGCAGCTGCAG
CGCCTACCAGGCTACCAGAGCAATATCAGTAACACCACAGCTTCCAGTAT
CTCCGCTTATTCAAGTCGCACCATGGCAGACGGTATGTCATAGCATCGAT
GTCCTACATTCTCCTGTGCGCAACCCCTACCCAGCGCACGGCCCTTTCTT
TTTTCACGCTGCTTTCGCCTTCTGTACATAACTTTGTATTTTGGTAGAAC
TCTGAACCGAGCACTGGTGCCTCTTACTGTCTTGCACATCCCTCGCGACT
CACTCCACGACCTGTATATGTCCTATGTCCCACTTCCCGCTCAATTACAG
ACACGCGCCACGAGGAAAACCATCGGGCCCACGCAGGCAAATCCATGGAA
GCAGCTGAGACGCTGCAAACTCTGATGAAACATCACGTAGGAGGAAAGGG
CTTTCTTTTACCTGGGGCGGCAGACGTGCGGGAAGAGATACAGGGCGGGA
AGGATGGTGGTGGCGGTGGTGGTAGCGGTGTTGGTAGCGGTGGCGGTGGT
ACGGATGCATTTCACTCCGTGACCGCGTCTAGTGTAGGCAGTCCTTCTCA
TTCCCTTTCGCTCTCGCCGCCAGGAAACAGCAACAACATAAACAACACCG
ATGTCATGGACTTGCTGCCGCTGCAGTCACAAGCTACCTTGTTCTGTCAA
AGCCAAGACTCTTCACCTGGCGCCTTTACTAATACTACTAGCACGACAGC
TCTAATCAGTAGCAGTAGTAGCGATTGCAAGAGTAGCAATATGTCTGCCC
ATGTGATTCCACCTGCCTCACTGTCCTGGTCCCCCAACGCCGTCCCCCTC
CCCCCGGGGCAAGCCCCTACCAACCGGATGCCTATCCCCAACATCTTGGG
ACAGACAAGGCCTACGGCAGGGGAAAAGAGTACAGAAACCATTTCTAATC
TTCCTTACATTAAGCCAGAGGTCTCTTCGCCTGCATCAGCGAGTCGAAAA
CGCGCGCGCTCCTCCGCATCCTCCTCGACCACGTTACCGGCTCCAGCGAC
AGCAACTGCAACGGCACCAGCAGCACCACCACTCACCACATCTACCGCCA
CCGGAGTGGAGGACGGCTACATCCCAACCCCCCGCAATGATGGTCCGTGG
CACTACCTCGGTACTTTGCCCGCATCATCCACCTCTTTTTCCTCTGCCGC
TGACGGTGGTGGGGGAGATGGAAGTAGAGATGGAGGGAAATCGACCAGCG
GCGAAGCTGCAGCTGCAGCTGGAGCATCAACCAGCAGTGTTAGAGCCTCA
AGTGCCGGGAGTGATGAAGAAGGAACAAAGGCTAGACCTGCCGCCATGAA
CTTTGGGAGATACGGCGATCACTTGCCATACAGCGGCCGCAAGGTGTGTC
GAGTCAAGGGTTGCGATGGGCACCAGCGGTGGCCGGACTACTTATGCGGG
CAGCATGGGGGGGGGCGATGCCGGTGGGAGGGCTGCTCACTATTTCATCA
GGGAATCAATAGCATGGGCTTGCTCTTGTGTGGCAAGCACTGCAAGGCCG
TTGGTGCGGCGTATCGCCGCCCGCGTAGTGGGGGAAATCCGAAGGCAGAT
GGGGGCGGAGGTGGCGGAGGTGCCAGGGATGGCACTGTCAGCAGCAGTAC
CACCTGCAAGCAAAAGTAGAACACGTGTGGTAGAGGTGGGAAAGGCAAGG
GGGCTTCAGGTACGGTTGGGCCTGGCCTTCTGTATATGTGTGTATCACAA
AAAACATTTTCACCTGCATGTCCTTATACTTGTTTTGGAACCAAAACTGT
CGACTTAAACAAGCCAAACTCAAATGGAAATGGTCGTAAAGAAACAAAAA
TCAAACCCACGCGAAAGCGACAAGCAAGGCTGAAAAGACAGTCATGAAGA
CACAATCAGATAGCGGACGCAGCAAACAGAGAAGCAGACAACACAATTTG
ACTCTGGCCCTTCGCCTCTTTCTCGCCCATCTTCCTATCAGACAAAAGCT
GCAATTTTCAAAAGTAAATGAGAG

Coding sequence (CDS) from alignment at scaffold_16:334038..336561+

>mRNA_7121 ID=mRNA_7121|Name=jgi.p|Nanoce1779_2|595680|organism=Nannochloropsis oceanica|type=CDS|length=3600bp|location=Sequence derived from alignment at scaffold_16:334038..336561+ (Nannochloropsis oceanica)
ATGGCCATCTCAACTCCGAAACCAACAAACCCACACAATTCATTGACACG
AGTACAGTACCTCAAACGCACGCTGGGACATCCCCTTTTTGTGCCATCAA
CGGTCCGCCGAACTGGCAGCACACACTCCCTTCAATCCCTCTTCCTAGCT
GTAGAAAAAATGCCCTCCGCTTCCGACAATAAAGGACTCTTCATGCTCCT
CCCAGACGGACCCGTTTGGAGGAGCTCGGATGTCAAATCTATGCAAGGCT
TTATGGAAGAGTTTAATCTTCGCGCTGATGAGAGTGACATGCCGCAGCTT
ATGTGCGCTTTTGAAAAGCTTGTCGACACGTTGGGTATTGAGACATGCAC
TCAGGCCCTAGATCGAGTCAAAGAGCAACGCCTGCAACAGCAGCTGCAGC
GCCTACCAGGCTACCAGAGCAATATCAGTAACACCACAGCTTCCAGTATC
TCCGCTTATTCAAGTCGCACCATGGCAGACGACACGCGCCACGAGGAAAA
CCATCGGGCCCACGCAGGCAAATCCATGGAAGCAGCTGAGACGCTGCAAA
CTCTGATGAAACATCACGTAGGAGGAAAGGGCTTTCTTTTACCTGGGGCG
GCAGACGTGCGGGAAGAGATACAGGGCGGGAAGGATGGTGGTGGCGGTGG
TGGTAGCGGTGTTGGTAGCGGTGGCGGTGGTACGGATGCATTTCACTCCG
TGACCGCGTCTAGTGTAGGCAGTCCTTCTCATTCCCTTTCGCTCTCGCCG
CCAGGAAACAGCAACAACATAAACAACACCGATGTCATGGACTTGCTGCC
GCTGCAGTCACAAGCTACCTTGTTCTGTCAAAGCCAAGACTCTTCACCTG
GCGCCTTTACTAATACTACTAGCACGACAGCTCTAATCAGTAGCAGTAGT
AGCGATTGCAAGAGTAGCAATATGTCTGCCCATGTGATTCCACCTGCCTC
ACTGTCCTGGTCCCCCAACGCCGTCCCCCTCCCCCCGGGGCAAGCCCCTA
CCAACCGGATGCCTATCCCCAACATCTTGGGACAGACAAGGCCTACGGCA
GGGGAAAAGAGTACAGAAACCATTTCTAATCTTCCTTACATTAAGCCAGA
GGTCTCTTCGCCTGCATCAGCGAGTCGAAAACGCGCGCGCTCCTCCGCAT
CCTCCTCGACCACGTTACCGGCTCCAGCGACAGCAACTGCAACGGCACCA
GCAGCACCACCACTCACCACATCTACCGCCACCGGAGTGGAGGACGGCTA
CATCCCAACCCCCCGCAATGATGGTCCGTGGCACTACCTCGGTACTTTGC
CCGCATCATCCACCTCTTTTTCCTCTGCCGCTGACGGTGGTGGGGGAGAT
GGAAGTAGAGATGGAGGGAAATCGACCAGCGGCGAAGCTGCAGCTGCAGC
TGGAGCATCAACCAGCAGTGTTAGAGCCTCAAGTGCCGGGAGTGATGAAG
AAGGAACAAAGGCTAGACCTGCCGCCATGAACTTTGGGAGATACGGCGAT
CACTTGCCATACAGCGGCCGCAAGGTGTGTCGAGTCAAGGGTTGCGATGG
GCACCAGCGGTGGCCGGACTACTTATGCGGGCAGCATGGGGGGGGGCGAT
GCCGGTGGGAGGGCTGCTCACTATTTCATCAGGGAATCAATAGCATGGGC
TTGCTCTTGTGTGGCAAGCACTGCAAGGCCGTTGGTGCGGCGTATCGCCG
CCCGCGTAGTGGGGGAAATCCGAAGGCAGATGGGGGCGGAGGTGGCGGAG
GTGCCAGGGATGGCACTGTCAGCAGCAGTACCACCTGCAAGCAAAAGTAG
ATGGCCATCTCAACTCCGAAACCAACAAACCCACACAATTCATTGACACG
AGTACAGTACCTCAAACGCACGCTGGGACATCCCCTTTTTGTGCCATCAA
CGGTCCGCCGAACTGGCAGCACACACTCCCTTCAATCCCTCTTCCTAGCT
GTAGAAAAAATGCCCTCCGCTTCCGACAATAAAGGACTCTTCATGCTCCT
CCCAGACGGACCCGTTTGGAGGAGCTCGGATGTCAAATCTATGCAAGGCT
TTATGGAAGAGTTTAATCTTCGCGCTGATGAGAGTGACATGCCGCAGCTT
ATGTGCGCTTTTGAAAAGCTTGTCGACACGTTGGGTATTGAGACATGCAC
TCAGGCCCTAGATCGAGTCAAAGAGCAACGCCTGCAACAGCAGCTGCAGC
GCCTACCAGGCTACCAGAGCAATATCAGTAACACCACAGCTTCCAGTATC
TCCGCTTATTCAAGTCGCACCATGGCAGACGACACGCGCCACGAGGAAAA
CCATCGGGCCCACGCAGGCAAATCCATGGAAGCAGCTGAGACGCTGCAAA
CTCTGATGAAACATCACGTAGGAGGAAAGGGCTTTCTTTTACCTGGGGCG
GCAGACGTGCGGGAAGAGATACAGGGCGGGAAGGATGGTGGTGGCGGTGG
TGGTAGCGGTGTTGGTAGCGGTGGCGGTGGTACGGATGCATTTCACTCCG
TGACCGCGTCTAGTGTAGGCAGTCCTTCTCATTCCCTTTCGCTCTCGCCG
CCAGGAAACAGCAACAACATAAACAACACCGATGTCATGGACTTGCTGCC
GCTGCAGTCACAAGCTACCTTGTTCTGTCAAAGCCAAGACTCTTCACCTG
GCGCCTTTACTAATACTACTAGCACGACAGCTCTAATCAGTAGCAGTAGT
AGCGATTGCAAGAGTAGCAATATGTCTGCCCATGTGATTCCACCTGCCTC
ACTGTCCTGGTCCCCCAACGCCGTCCCCCTCCCCCCGGGGCAAGCCCCTA
CCAACCGGATGCCTATCCCCAACATCTTGGGACAGACAAGGCCTACGGCA
GGGGAAAAGAGTACAGAAACCATTTCTAATCTTCCTTACATTAAGCCAGA
GGTCTCTTCGCCTGCATCAGCGAGTCGAAAACGCGCGCGCTCCTCCGCAT
CCTCCTCGACCACGTTACCGGCTCCAGCGACAGCAACTGCAACGGCACCA
GCAGCACCACCACTCACCACATCTACCGCCACCGGAGTGGAGGACGGCTA
CATCCCAACCCCCCGCAATGATGGTCCGTGGCACTACCTCGGTACTTTGC
CCGCATCATCCACCTCTTTTTCCTCTGCCGCTGACGGTGGTGGGGGAGAT
GGAAGTAGAGATGGAGGGAAATCGACCAGCGGCGAAGCTGCAGCTGCAGC
TGGAGCATCAACCAGCAGTGTTAGAGCCTCAAGTGCCGGGAGTGATGAAG
AAGGAACAAAGGCTAGACCTGCCGCCATGAACTTTGGGAGATACGGCGAT
CACTTGCCATACAGCGGCCGCAAGGTGTGTCGAGTCAAGGGTTGCGATGG
GCACCAGCGGTGGCCGGACTACTTATGCGGGCAGCATGGGGGGGGGCGAT
GCCGGTGGGAGGGCTGCTCACTATTTCATCAGGGAATCAATAGCATGGGC
TTGCTCTTGTGTGGCAAGCACTGCAAGGCCGTTGGTGCGGCGTATCGCCG
CCCGCGTAGTGGGGGAAATCCGAAGGCAGATGGGGGCGGAGGTGGCGGAG
GTGCCAGGGATGGCACTGTCAGCAGCAGTACCACCTGCAAGCAAAAGTAG

Synonyms

Publications