jgi.p|Nanoce1779_2|596599, mRNA_6867 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|596599
Unique Name	mRNA_6867
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1758
Alignment location	scaffold_17:296013..297941 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	596685
Track	FilteredModels2
ProteinId	596599

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_17	supercontig	scaffold_17:296013..297941 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|596599	gene_6867	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|596599	mRNA_6867-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6867	CDS_6867	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_17:296013..297941+
coding sequence from alignment at scaffold_17:296013..297941+

mRNA sequence

>mRNA_6867 ID=mRNA_6867|Name=jgi.p|Nanoce1779_2|596599|organism=Nannochloropsis oceanica|type=mRNA|length=1758bp
AGGCCGTGTCAATATGCCATTGTCAGTGCCAGCGTCCTCATTCCTTGTGC
TGGTCCTTGCCACTATCCTCCCCTTCCTTTCCCATGTCCAAGCTTTTTCC
TCCCCCAGCCGGCTACCCTCGCAGCACTCTCCATATGACCGCCGTCCCCC
TACTATTCCGCCTTCTAGCCCCGCCACCGAAGACCGCGGCAGTAATTTGT
ATCGACCGCTCAATCCTCTGCTGGGACCAGGAAGCCGAGTGGCGATTGAC
GGCGCCGATGCCCCTGGAGAGAGCAATACTCTCGCGAGGCTTATTACAAA
GAAGCTATTCAAGTCACAAATGAGGCCTTATTTACTTGTACCCTCCATGG
ACAAAGTGCCCACAGGCCTAGGATTTGATCAGTATAAGGGGCTAACTCGT
TACTTATGCACGGCAGCGGTGGATGAGAAGAAAGGGGGGGATGGTAAAAT
ACCTTTGGAGATTGATGGGTTAGTCTTATGCTCGGAAATGGGGTATACTT
CCAAGCAAGTTCGCGAGCTGCTGGAACGCGTAGAGGATGAGGAGGGGGAC
AAGGACAAGAGGGAGACAGCTGGAGGGACAGGGGAGAAAAAGGGGCTGAA
GAGGGTGGTGATGTTGTCGAGCTTGGGCGTGATTCGACGGGAGGATGTCA
TTTGGAAATTGAAGCAGTTTGGGGTGGACCTGGAGAAGAGGTACCAAGCC
GAGCAAGAGCTCATCTCGCAAGCCCAACGGCGCGGTTTCACATATACCCT
CATTCGGGTAGGACCTTTGCGAGGCGGTGGGGGTGATGAAGGCCTGGGAT
TTGAATTCTATGACCACCGGTCATCTTCCAAATTTCAAACTCTTTTGAAA
AATCCTCTTTCCGTCCTGGATGATAAAGACGAGCACTTCGATGCGACCAA
GCGAGGCTTTACTTTCTCCTACGAGGATAATCTTGTCTTTGGCGACACTG
GGAGAATTCTAGCGGCGGAGACGATGATTAAGGCCTTGGGGTCGGCGCAC
GTTGAGGACGTGGCGCTATCACTGGTGAGTGAACAGGGACGGACATGGCC
AAACTTTCAGGTGGCGCCCTGGGACTTGTTTTAAGCGGTGGGTAGGACGG
GAGGAAAGGCGTCTTTTTCTACCACACTCATAGTTAAGAGGACGAAGATG
AGCGGAGGGGATGAGGAACGAAGGAAGATACATAGCGCGTTGGATGCCGT
TCCAGGTGCGCATTTTTGGGGGGGTAATTGAACCGTACAGGCGGGTGTCT
AGGTGTCTGCGTATCTGTGCGTCTGTCCAATGTTTGGATGTGTGTAATTG
TGTGTAAGAAGTGTGTTTTACTGAGATGCTGCTTGTCTGTAATTCTCTAT
TGGGTGTTCCCGATCGTGTACATCCCCTGTGAACCCCAAAAAATGAAAAG
ACAGAGAAGGGCGAACCACAAGCAGTAGAATCCATACGTCGAAAAAAACC
AAAGGTTTCTCTCCAGAAGTAAATAAATGGTCAGGGTAGGAAGGCGCCGA
GAAACTGATAATATAAAAAGGGAGAGGCAGAGACGGACAGAGGCTATGTT
TGATATAAAAAGAATTAGAGAAAATCAGAGAAACAGAAAGAGACACCAGA
GAGGGTCAGAGCGAGACAGAGACGTAGAAAGAGACTATGTAGAACACGAA
CGCGCTAATTTGCAGGTAAAGAGTGTTTTTTTTTTAAACGAGAAGGAAGA
CCCCCCAAAAAGAAAGGAACTGATATGCGAGAGGCGACAAGGAAGGCCTG
CGAGACAA

protein sequence of jgi.p|Nanoce1779_2|596599

>mRNA_6867-protein ID=mRNA_6867-protein|Name=jgi.p|Nanoce1779_2|596599|organism=Nannochloropsis oceanica|type=polypeptide|length=357bp
MPLSVPASSFLVLVLATILPFLSHVQAFSSPSRLPSQHSPYDRRPPTIPP
SSPATEDRGSNLYRPLNPLLGPGSRVAIDGADAPGESNTLARLITKKLFK
SQMRPYLLVPSMDKVPTGLGFDQYKGLTRYLCTAAVDEKKGGDGKIPLEI
DGLVLCSEMGYTSKQVRELLERVEDEEGDKDKRETAGGTGEKKGLKRVVM
LSSLGVIRREDVIWKLKQFGVDLEKRYQAEQELISQAQRRGFTYTLIRVG
PLRGGGGDEGLGFEFYDHRSSSKFQTLLKNPLSVLDDKDEHFDATKRGFT
FSYEDNLVFGDTGRILAAETMIKALGSAHVEDVALSLVSEQGRTWPNFQV
APWDLF*

mRNA from alignment at scaffold_17:296013..297941+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6867 ID=mRNA_6867|Name=jgi.p|Nanoce1779_2|596599|organism=Nannochloropsis oceanica|type=mRNA|length=1929bp|location=Sequence derived from alignment at scaffold_17:296013..297941+ (Nannochloropsis oceanica)
AGGCCGTGTCAATATGCCATTGTCAGTGCCAGCGTCCTCATTCCTTGTGC
TGGTCCTTGCCACTATCCTCCCCTTCCTTTCCCATGTCCAAGCTTTTTCC
TCCCCCAGCCGGCTACCCTCGCAGCACTCTCCATATGACCGCCGTCCCCC
TACTATTCCGCCTTCTAGCCCCGCCACCGAAGACCGCGGCAGTAATTTGT
ATCGACCGCTCAATCCTCTGCTGGGACCAGGAAGCCGAGTGGCGATTGAC
GGCGCCGATGCCCCTGGAGAGAGCAATACTCTCGCGAGGCTTATTACAAA
GAAGCTATTCAAGTCACAAATGAGGCCTTATTTACTTGTACCCTCCATGG
ACAAAGTGCCCACAGGCCTAGGATTTGATCAGTATAAGGGGCTAACTCGT
TACTTATGCACGGCAGCGGTGGATGAGAAGAAAGGGGGGGATGGTAAAAT
ACCTTTGGAGATTGATGGGTTAGTCTTATGCTCGGAAATGGGGTATACTT
CCAAGCAAGTTCGCGAGCTGCTGGAACGCGTAGAGGATGAGGAGGGGGAC
AAGGACAAGAGGGAGACAGCTGGAGGGACAGGGGAGAAAAAGGGGCTGAA
GAGGGTGGTGATGTTGTCGAGCTTGGGCGTGATTCGACGGGAGGATGTCA
TTTGGAAATTGAAGCAGTTTGGGGTGGACCTGGAGAAGAGGGTGAGTTAA
ATCCGTGGGTGGAGGATGGGTGGAAAGGATGGCAGGAGAGTAGCACTTAC
AAGCTCGTGAATGTTGTGCTTTTTAGGACGTATTTCTATTCATCGCACAC
GCCGCTCATCTTCCTTGTTTCCTCCCTCCCTCCCTCCCCCTCTCGTTCCA
ACCCAAAAAAAGTACCAAGCCGAGCAAGAGCTCATCTCGCAAGCCCAACG
GCGCGGTTTCACATATACCCTCATTCGGGTAGGACCTTTGCGAGGCGGTG
GGGGTGATGAAGGCCTGGGATTTGAATTCTATGACCACCGGTCATCTTCC
AAATTTCAAACTCTTTTGAAAAATCCTCTTTCCGTCCTGGATGATAAAGA
CGAGCACTTCGATGCGACCAAGCGAGGCTTTACTTTCTCCTACGAGGATA
ATCTTGTCTTTGGCGACACTGGGAGAATTCTAGCGGCGGAGACGATGATT
AAGGCCTTGGGGTCGGCGCACGTTGAGGACGTGGCGCTATCACTGGTGAG
TGAACAGGGACGGACATGGCCAAACTTTCAGGTGGCGCCCTGGGACTTGT
TTTAAGCGGTGGGTAGGACGGGAGGAAAGGCGTCTTTTTCTACCACACTC
ATAGTTAAGAGGACGAAGATGAGCGGAGGGGATGAGGAACGAAGGAAGAT
ACATAGCGCGTTGGATGCCGTTCCAGGTGCGCATTTTTGGGGGGGTAATT
GAACCGTACAGGCGGGTGTCTAGGTGTCTGCGTATCTGTGCGTCTGTCCA
ATGTTTGGATGTGTGTAATTGTGTGTAAGAAGTGTGTTTTACTGAGATGC
TGCTTGTCTGTAATTCTCTATTGGGTGTTCCCGATCGTGTACATCCCCTG
TGAACCCCAAAAAATGAAAAGACAGAGAAGGGCGAACCACAAGCAGTAGA
ATCCATACGTCGAAAAAAACCAAAGGTTTCTCTCCAGAAGTAAATAAATG
GTCAGGGTAGGAAGGCGCCGAGAAACTGATAATATAAAAAGGGAGAGGCA
GAGACGGACAGAGGCTATGTTTGATATAAAAAGAATTAGAGAAAATCAGA
GAAACAGAAAGAGACACCAGAGAGGGTCAGAGCGAGACAGAGACGTAGAA
AGAGACTATGTAGAACACGAACGCGCTAATTTGCAGGTAAAGAGTGTTTT
TTTTTTAAACGAGAAGGAAGACCCCCCAAAAAGAAAGGAACTGATATGCG
AGAGGCGACAAGGAAGGCCTGCGAGACAA

Coding sequence (CDS) from alignment at scaffold_17:296013..297941+

>mRNA_6867 ID=mRNA_6867|Name=jgi.p|Nanoce1779_2|596599|organism=Nannochloropsis oceanica|type=CDS|length=2142bp|location=Sequence derived from alignment at scaffold_17:296013..297941+ (Nannochloropsis oceanica)
ATGCCATTGTCAGTGCCAGCGTCCTCATTCCTTGTGCTGGTCCTTGCCAC
TATCCTCCCCTTCCTTTCCCATGTCCAAGCTTTTTCCTCCCCCAGCCGGC
TACCCTCGCAGCACTCTCCATATGACCGCCGTCCCCCTACTATTCCGCCT
TCTAGCCCCGCCACCGAAGACCGCGGCAGTAATTTGTATCGACCGCTCAA
TCCTCTGCTGGGACCAGGAAGCCGAGTGGCGATTGACGGCGCCGATGCCC
CTGGAGAGAGCAATACTCTCGCGAGGCTTATTACAAAGAAGCTATTCAAG
TCACAAATGAGGCCTTATTTACTTGTACCCTCCATGGACAAAGTGCCCAC
AGGCCTAGGATTTGATCAGTATAAGGGGCTAACTCGTTACTTATGCACGG
CAGCGGTGGATGAGAAGAAAGGGGGGGATGGTAAAATACCTTTGGAGATT
GATGGGTTAGTCTTATGCTCGGAAATGGGGTATACTTCCAAGCAAGTTCG
CGAGCTGCTGGAACGCGTAGAGGATGAGGAGGGGGACAAGGACAAGAGGG
AGACAGCTGGAGGGACAGGGGAGAAAAAGGGGCTGAAGAGGGTGGTGATG
TTGTCGAGCTTGGGCGTGATTCGACGGGAGGATGTCATTTGGAAATTGAA
GCAGTTTGGGGTGGACCTGGAGAAGAGGTACCAAGCCGAGCAAGAGCTCA
TCTCGCAAGCCCAACGGCGCGGTTTCACATATACCCTCATTCGGGTAGGA
CCTTTGCGAGGCGGTGGGGGTGATGAAGGCCTGGGATTTGAATTCTATGA
CCACCGGTCATCTTCCAAATTTCAAACTCTTTTGAAAAATCCTCTTTCCG
TCCTGGATGATAAAGACGAGCACTTCGATGCGACCAAGCGAGGCTTTACT
TTCTCCTACGAGGATAATCTTGTCTTTGGCGACACTGGGAGAATTCTAGC
GGCGGAGACGATGATTAAGGCCTTGGGGTCGGCGCACGTTGAGGACGTGG
CGCTATCACTGGTGAGTGAACAGGGACGGACATGGCCAAACTTTCAGGTG
GCGCCCTGGGACTTGTTTTAAATGCCATTGTCAGTGCCAGCGTCCTCATT
CCTTGTGCTGGTCCTTGCCACTATCCTCCCCTTCCTTTCCCATGTCCAAG
CTTTTTCCTCCCCCAGCCGGCTACCCTCGCAGCACTCTCCATATGACCGC
CGTCCCCCTACTATTCCGCCTTCTAGCCCCGCCACCGAAGACCGCGGCAG
TAATTTGTATCGACCGCTCAATCCTCTGCTGGGACCAGGAAGCCGAGTGG
CGATTGACGGCGCCGATGCCCCTGGAGAGAGCAATACTCTCGCGAGGCTT
ATTACAAAGAAGCTATTCAAGTCACAAATGAGGCCTTATTTACTTGTACC
CTCCATGGACAAAGTGCCCACAGGCCTAGGATTTGATCAGTATAAGGGGC
TAACTCGTTACTTATGCACGGCAGCGGTGGATGAGAAGAAAGGGGGGGAT
GGTAAAATACCTTTGGAGATTGATGGGTTAGTCTTATGCTCGGAAATGGG
GTATACTTCCAAGCAAGTTCGCGAGCTGCTGGAACGCGTAGAGGATGAGG
AGGGGGACAAGGACAAGAGGGAGACAGCTGGAGGGACAGGGGAGAAAAAG
GGGCTGAAGAGGGTGGTGATGTTGTCGAGCTTGGGCGTGATTCGACGGGA
GGATGTCATTTGGAAATTGAAGCAGTTTGGGGTGGACCTGGAGAAGAGGT
ACCAAGCCGAGCAAGAGCTCATCTCGCAAGCCCAACGGCGCGGTTTCACA
TATACCCTCATTCGGGTAGGACCTTTGCGAGGCGGTGGGGGTGATGAAGG
CCTGGGATTTGAATTCTATGACCACCGGTCATCTTCCAAATTTCAAACTC
TTTTGAAAAATCCTCTTTCCGTCCTGGATGATAAAGACGAGCACTTCGAT
GCGACCAAGCGAGGCTTTACTTTCTCCTACGAGGATAATCTTGTCTTTGG
CGACACTGGGAGAATTCTAGCGGCGGAGACGATGATTAAGGCCTTGGGGT
CGGCGCACGTTGAGGACGTGGCGCTATCACTGGTGAGTGAACAGGGACGG
ACATGGCCAAACTTTCAGGTGGCGCCCTGGGACTTGTTTTAA

Synonyms

Publications