|
|
Properties
| Property Name | Value |
|---|
| TranscriptId | 558374 |
| Track | FilteredModels2 |
| ProteinId | 558288 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_18 | supercontig | scaffold_18:475673..478400 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_6700 ID=mRNA_6700|Name=jgi.p|Nanoce1779_2|558288|organism=Nannochloropsis oceanica|type=mRNA|length=2504bp
ACAGGTATTAAAACCTGTGGCTACGCGTGCCTTTGGTTGGCTGCATTCTC
AGTGCGACAGTCCCCCTGCAGCAAACGCCCGCCCGCCCCGCGGATGTCCG
AAAGCAATACCCGTCTCTCATCCCCACTACGCAAAATGACGGTCGAAGAC
AAAGAAAACATGCCGGTGAACCCCAACACCACCAGCACCTCAGGCAGCAG
CAGCAGTAACAATAGCAATAGCAGTCATGACAACCTCAAGAAGGCCCCCT
CCTCTTCTTCGTCGCGCGAGCCCGCCGACCCGGACCGTGTGTGGTCTTTG
AACGACTTTGATATTGGCCGGAAGCTGGGCCGCGGCAAGTTTGGTGCTGT
GTATCTCGCCCGGGAAAAGTGCACGCAGTTCATCGTTGCCATCAAGGTCC
TAGAAAAGCGGCAGCTCTTTCGTTCGTCGGTCGAGCACCAACTGCGGCGG
GAGATCGAAATTCAAGCTCACCTCCGTCACAAGAATATCTTGCGTATGTA
CGGCTACTTTTTCGACGACAAGCGTATTTATCTCATCTTGGAGTACGCGC
CTCACGGCGAGCTCTACAAGCACCTGACCAACCAAGGTCGGTTCTCCGAA
CGTCAGTCTGCGCAATTTATCCTCGAGATGTCTTCCGCTCTTGGGTACTG
CCACGAGAAGCACGTCATCCATCGAGATATCAAGCCAGAGAATCTGTTAC
TGGGGCCCAAGCGTGAGTTGAAGATTGCGGATTTTGGGTGGTCTGTGCAC
GCGCCTTCCTCTCGCAGGGAGACCTTGTGTGGCACCTTGGATTACCTGCC
CCCTGAGATGATAGAGGGAAAGAAGCACGACAAGTGGGTCGATGTTTGGA
GTTTGGGCGTTTTGATGTACGAGTTCTTGGTTGGCAATCCCCCCTTTGAA
GCCGAGGGGCATCAGGCGACTTACCGAAGAATTAGTCGGGTCGACCTGAG
GTTCCCTCCCGAGGTCTCGTCCGAGGCCCAGGACTTGATTGCCAAGCTGC
TGGTCAAAGAGCCGTCGTGTCGTTTACCATTGGACAAAATTCCGACCCAC
CCTTGGGTGTTGCGAAACGCGCCACGCCATTCGTTGCAGCAATACCTGCC
GGCCGGGACATTTGCGGCGTTATTTTCCTCGCCCCCTGCTGCTACTGCTG
CTGCTCCGGTGGGCGGAAGTGATGGGAGAAATGGAGGAAAGTAGAAGGTG
ATGGTAGTGGTAGAGAGAGGAAAGGTAGGAGGATGGGAGGGTGAGATGGA
TTTGTACGTAGGAGGGGGAAGAGGGAGGCAGAGAATAATTAAACTGAGCG
AATGGTGAGGAAGAGAGAAGGAATCTGGAAGGAAGGGAAGGTGAAAAGGA
TTTGCCATGACAAGGAATGAGCAGTTGTCAATGCGCAGTATTTGGTGCGA
GGAGAAGAGTCGATGGAGAGAGGGAAGAAGGAAGACAGTGCGGCGTGTGG
GGCCTCATTGCAACCGAAAGGTACACACGTCAGTCTGCTATTTGGCGTAT
CAATTTTAAGAAAGTGAAAAGACAGATTAGACATATGACTTTAAAAACGC
TCGAGAAAAATACCGGAAAGACCCTTTGGATGGATATGGGGACCTAGGTT
CCATTTCGCTGGCGGCCCGGGGGCGGCTTTTCGAGTTTGTTTACGGGACA
TCTTTTCACTCGCTACTCGCTCACTCTCGGTCCTTCTAGCCACTTGTTCC
AGCCACTTATTTTTCTTCGTATTCTAACTTGTTGATCTTCAGTGACTCCA
TGCTCACAGCGCACCGCACGACTGAGGTAACGACCGAAGCGGCCAGCGTG
GGAGAACGCAGGAGGGGCGATGCGAAAAATTTTAAGAATCCAGAAACACC
AAAGCGTGCGAGTAAAAGGAAATATGTGGTGCATGTCCGGTGGCAACCAG
CCACTCGTAATGCAACCAACATTGTTTTATCTCCAAAATTTCTCTGCTTT
ATCATGTGACGTTTTAGGAACCAGAGCTGCGTAGAAGTTGCCCGCGCGCC
TCACACCCATATTTGCTTGGGTGCTACATTATCCCTTCTCTCCCCCTTCC
TCTTCCTCTCCTCAGTCCTTTCCTGCTTGCGGCAGAGTGAGGCGCCCGCA
CTTCAAAGCCACCCTCAAATCCAACTTCGAGGATTACATCATCATCTCAC
TACAAAAATGATTTCACACGCAAACAGGAGCGAAAGGGCATTCCCTTCCG
CTTTCTTTTCTTCTCTATCTTCTTGAATATATCTCTCACACACACACGCG
AGGCCGTCCGCTCTTCCCTTTCACTTATTGGAATTTGATCTCTCCTGTGT
ACACACCACCCCCACTTCTCCCTCCTTGCAAAATCATTGTCCTCGCCCCT
CCGTCCCTCCGTCCCTCCTTCTTTCCTCCCTATCCTTGCATGACTTTACA
GGAAGTAAGGTACGAGGTTTCTCCGTTCCTCCGCCATGTTGCTCTCCGGC
ACCTCTGTAGGAAAGGGAGGTAGGGAGGGAAGGAAAGAGTGAGGCGACCG
ATCG back to topprotein sequence of jgi.p|Nanoce1779_2|558288 >mRNA_6700-protein ID=mRNA_6700-protein|Name=jgi.p|Nanoce1779_2|558288|organism=Nannochloropsis oceanica|type=polypeptide|length=367bp
MSESNTRLSSPLRKMTVEDKENMPVNPNTTSTSGSSSSNNSNSSHDNLKK
APSSSSSREPADPDRVWSLNDFDIGRKLGRGKFGAVYLAREKCTQFIVAI
KVLEKRQLFRSSVEHQLRREIEIQAHLRHKNILRMYGYFFDDKRIYLILE
YAPHGELYKHLTNQGRFSERQSAQFILEMSSALGYCHEKHVIHRDIKPEN
LLLGPKRELKIADFGWSVHAPSSRRETLCGTLDYLPPEMIEGKKHDKWVD
VWSLGVLMYEFLVGNPPFEAEGHQATYRRISRVDLRFPPEVSSEAQDLIA
KLLVKEPSCRLPLDKIPTHPWVLRNAPRHSLQQYLPAGTFAALFSSPPAA
TAAAPVGGSDGRNGGK* back to topmRNA from alignment at scaffold_18:475673..478400- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_6700 ID=mRNA_6700|Name=jgi.p|Nanoce1779_2|558288|organism=Nannochloropsis oceanica|type=mRNA|length=2728bp|location=Sequence derived from alignment at scaffold_18:475673..478400- (Nannochloropsis oceanica)
ACAGGTATTAAAACCTGTGGCTACGCGTGCCTTTGGTTGGCTGCATTCTC
AGTGCGACAGTCCCCCTGCAGCAAACGCCCGCCCGCCCCGCGGATGTCCG
AAAGCAATACCCGTCTCTCATCCCCACTACGCAAAATGACGGTCGAAGAC
AAAGGTATGTGTAATTTCACTGTTCATCAATGGTTGCGTGCTGTTAAGAA
AGCGGCGTGCTGGGTCCTCTTTTGCATCGATCCCCTCCTTCTCCTCTCTG
ATCCCTTTCCCCACCTCACCTCTTCTCCCCACCAGAAAACATGCCGGTGA
ACCCCAACACCACCAGCACCTCAGGCAGCAGCAGCAGTAACAATAGCAAT
AGCAGTCATGACAACCTCAAGAAGGCCCCCTCCTCTTCTTCGTCGCGCGA
GCCCGCCGACCCGGACCGTGTGTGGTCTTTGAACGACTTTGATATTGGCC
GGAAGCTGGGCCGCGGCAAGTTTGGTGCTGTGTATCTCGCCCGGGAAAAG
TGCACGCAGTTCATCGTTGCCATCAAGGTCCTAGAAAAGCGGCAGCTCTT
TCGTTCGTCGGTCGAGCACCAACTGCGGCGGGAGGTAGGTTCTGTCCGGT
GTCTTTGTGTGCGTGCGTGTTCCCTTGTTTTGTGTCTAAGACGAGTAGTT
TCTCACGCCCCTCCCCCCCCCCAAAAGATCGAAATTCAAGCTCACCTCCG
TCACAAGAATATCTTGCGTATGTACGGCTACTTTTTCGACGACAAGCGTA
TTTATCTCATCTTGGAGTACGCGCCTCACGGCGAGCTCTACAAGCACCTG
ACCAACCAAGGTCGGTTCTCCGAACGTCAGTCTGCGCAATTTATCCTCGA
GATGTCTTCCGCTCTTGGGTACTGCCACGAGAAGCACGTCATCCATCGAG
ATATCAAGCCAGAGAATCTGTTACTGGGGCCCAAGCGTGAGTTGAAGATT
GCGGATTTTGGGTGGTCTGTGCACGCGCCTTCCTCTCGCAGGGAGACCTT
GTGTGGCACCTTGGATTACCTGCCCCCTGAGATGATAGAGGGAAAGAAGC
ACGACAAGTGGGTCGATGTTTGGAGTTTGGGCGTTTTGATGTACGAGTTC
TTGGTTGGCAATCCCCCCTTTGAAGCCGAGGGGCATCAGGCGACTTACCG
AAGAATTAGTCGGGTCGACCTGAGGTTCCCTCCCGAGGTCTCGTCCGAGG
CCCAGGACTTGATTGCCAAGCTGCTGGTCAAAGAGCCGTCGTGTCGTTTA
CCATTGGACAAAATTCCGACCCACCCTTGGGTGTTGCGAAACGCGCCACG
CCATTCGTTGCAGCAATACCTGCCGGCCGGGACATTTGCGGCGTTATTTT
CCTCGCCCCCTGCTGCTACTGCTGCTGCTCCGGTGGGCGGAAGTGATGGG
AGAAATGGAGGAAAGTAGAAGGTGATGGTAGTGGTAGAGAGAGGAAAGGT
AGGAGGATGGGAGGGTGAGATGGATTTGTACGTAGGAGGGGGAAGAGGGA
GGCAGAGAATAATTAAACTGAGCGAATGGTGAGGAAGAGAGAAGGAATCT
GGAAGGAAGGGAAGGTGAAAAGGATTTGCCATGACAAGGAATGAGCAGTT
GTCAATGCGCAGTATTTGGTGCGAGGAGAAGAGTCGATGGAGAGAGGGAA
GAAGGAAGACAGTGCGGCGTGTGGGGCCTCATTGCAACCGAAAGGTACAC
ACGTCAGTCTGCTATTTGGCGTATCAATTTTAAGAAAGTGAAAAGACAGA
TTAGACATATGACTTTAAAAACGCTCGAGAAAAATACCGGAAAGACCCTT
TGGATGGATATGGGGACCTAGGTTCCATTTCGCTGGCGGCCCGGGGGCGG
CTTTTCGAGTTTGTTTACGGGACATCTTTTCACTCGCTACTCGCTCACTC
TCGGTCCTTCTAGCCACTTGTTCCAGCCACTTATTTTTCTTCGTATTCTA
ACTTGTTGATCTTCAGTGACTCCATGCTCACAGCGCACCGCACGACTGAG
GTAACGACCGAAGCGGCCAGCGTGGGAGAACGCAGGAGGGGCGATGCGAA
AAATTTTAAGAATCCAGAAACACCAAAGCGTGCGAGTAAAAGGAAATATG
TGGTGCATGTCCGGTGGCAACCAGCCACTCGTAATGCAACCAACATTGTT
TTATCTCCAAAATTTCTCTGCTTTATCATGTGACGTTTTAGGAACCAGAG
CTGCGTAGAAGTTGCCCGCGCGCCTCACACCCATATTTGCTTGGGTGCTA
CATTATCCCTTCTCTCCCCCTTCCTCTTCCTCTCCTCAGTCCTTTCCTGC
TTGCGGCAGAGTGAGGCGCCCGCACTTCAAAGCCACCCTCAAATCCAACT
TCGAGGATTACATCATCATCTCACTACAAAAATGATTTCACACGCAAACA
GGAGCGAAAGGGCATTCCCTTCCGCTTTCTTTTCTTCTCTATCTTCTTGA
ATATATCTCTCACACACACACGCGAGGCCGTCCGCTCTTCCCTTTCACTT
ATTGGAATTTGATCTCTCCTGTGTACACACCACCCCCACTTCTCCCTCCT
TGCAAAATCATTGTCCTCGCCCCTCCGTCCCTCCGTCCCTCCTTCTTTCC
TCCCTATCCTTGCATGACTTTACAGGAAGTAAGGTACGAGGTTTCTCCGT
TCCTCCGCCATGTTGCTCTCCGGCACCTCTGTAGGAAAGGGAGGTAGGGA
GGGAAGGAAAGAGTGAGGCGACCGATCG back to topCoding sequence (CDS) from alignment at scaffold_18:475673..478400- >mRNA_6700 ID=mRNA_6700|Name=jgi.p|Nanoce1779_2|558288|organism=Nannochloropsis oceanica|type=CDS|length=3303bp|location=Sequence derived from alignment at scaffold_18:475673..478400- (Nannochloropsis oceanica)
ATCGAAATTCAAGCTCACCTCCGTCACAAGAATATCTTGCGTATGTACGG
CTACTTTTTCGACGACAAGCGTATTTATCTCATCTTGGAGTACGCGCCTC
ACGGCGAGCTCTACAAGCACCTGACCAACCAAGGTCGGTTCTCCGAACGT
CAGTCTGCGCAATTTATCCTCGAGATGTCTTCCGCTCTTGGGTACTGCCA
CGAGAAGCACGTCATCCATCGAGATATCAAGCCAGAGAATCTGTTACTGG
GGCCCAAGCGTGAGTTGAAGATTGCGGATTTTGGGTGGTCTGTGCACGCG
CCTTCCTCTCGCAGGGAGACCTTGTGTGGCACCTTGGATTACCTGCCCCC
TGAGATGATAGAGGGAAAGAAGCACGACAAGTGGGTCGATGTTTGGAGTT
TGGGCGTTTTGATGTACGAGTTCTTGGTTGGCAATCCCCCCTTTGAAGCC
GAGGGGCATCAGGCGACTTACCGAAGAATTAGTCGGGTCGACCTGAGGTT
CCCTCCCGAGGTCTCGTCCGAGGCCCAGGACTTGATTGCCAAGCTGCTGG
TCAAAGAGCCGTCGTGTCGTTTACCATTGGACAAAATTCCGACCCACCCT
TGGGTGTTGCGAAACGCGCCACGCCATTCGTTGCAGCAATACCTGCCGGC
CGGGACATTTGCGGCGTTATTTTCCTCGCCCCCTGCTGCTACTGCTGCTG
CTCCGGTGGGCGGAAGTGATGGGAGAAATGGAGGAAAGTAGAAAACATGC
CGGTGAACCCCAACACCACCAGCACCTCAGGCAGCAGCAGCAGTAACAAT
AGCAATAGCAGTCATGACAACCTCAAGAAGGCCCCCTCCTCTTCTTCGTC
GCGCGAGCCCGCCGACCCGGACCGTGTGTGGTCTTTGAACGACTTTGATA
TTGGCCGGAAGCTGGGCCGCGGCAAGTTTGGTGCTGTGTATCTCGCCCGG
GAAAAGTGCACGCAGTTCATCGTTGCCATCAAGGTCCTAGAAAAGCGGCA
GCTCTTTCGTTCGTCGGTCGAGCACCAACTGCGGCGGGAGATGTCCGAAA
GCAATACCCGTCTCTCATCCCCACTACGCAAAATGACGGTCGAAGACAAA
GATCGAAATTCAAGCTCACCTCCGTCACAAGAATATCTTGCGTATGTACG
GCTACTTTTTCGACGACAAGCGTATTTATCTCATCTTGGAGTACGCGCCT
CACGGCGAGCTCTACAAGCACCTGACCAACCAAGGTCGGTTCTCCGAACG
TCAGTCTGCGCAATTTATCCTCGAGATGTCTTCCGCTCTTGGGTACTGCC
ACGAGAAGCACGTCATCCATCGAGATATCAAGCCAGAGAATCTGTTACTG
GGGCCCAAGCGTGAGTTGAAGATTGCGGATTTTGGGTGGTCTGTGCACGC
GCCTTCCTCTCGCAGGGAGACCTTGTGTGGCACCTTGGATTACCTGCCCC
CTGAGATGATAGAGGGAAAGAAGCACGACAAGTGGGTCGATGTTTGGAGT
TTGGGCGTTTTGATGTACGAGTTCTTGGTTGGCAATCCCCCCTTTGAAGC
CGAGGGGCATCAGGCGACTTACCGAAGAATTAGTCGGGTCGACCTGAGGT
TCCCTCCCGAGGTCTCGTCCGAGGCCCAGGACTTGATTGCCAAGCTGCTG
GTCAAAGAGCCGTCGTGTCGTTTACCATTGGACAAAATTCCGACCCACCC
TTGGGTGTTGCGAAACGCGCCACGCCATTCGTTGCAGCAATACCTGCCGG
CCGGGACATTTGCGGCGTTATTTTCCTCGCCCCCTGCTGCTACTGCTGCT
GCTCCGGTGGGCGGAAGTGATGGGAGAAATGGAGGAAAGTAGAAAACATG
CCGGTGAACCCCAACACCACCAGCACCTCAGGCAGCAGCAGCAGTAACAA
TAGCAATAGCAGTCATGACAACCTCAAGAAGGCCCCCTCCTCTTCTTCGT
CGCGCGAGCCCGCCGACCCGGACCGTGTGTGGTCTTTGAACGACTTTGAT
ATTGGCCGGAAGCTGGGCCGCGGCAAGTTTGGTGCTGTGTATCTCGCCCG
GGAAAAGTGCACGCAGTTCATCGTTGCCATCAAGGTCCTAGAAAAGCGGC
AGCTCTTTCGTTCGTCGGTCGAGCACCAACTGCGGCGGGAGATGTCCGAA
AGCAATACCCGTCTCTCATCCCCACTACGCAAAATGACGGTCGAAGACAA
AGATCGAAATTCAAGCTCACCTCCGTCACAAGAATATCTTGCGTATGTAC
GGCTACTTTTTCGACGACAAGCGTATTTATCTCATCTTGGAGTACGCGCC
TCACGGCGAGCTCTACAAGCACCTGACCAACCAAGGTCGGTTCTCCGAAC
GTCAGTCTGCGCAATTTATCCTCGAGATGTCTTCCGCTCTTGGGTACTGC
CACGAGAAGCACGTCATCCATCGAGATATCAAGCCAGAGAATCTGTTACT
GGGGCCCAAGCGTGAGTTGAAGATTGCGGATTTTGGGTGGTCTGTGCACG
CGCCTTCCTCTCGCAGGGAGACCTTGTGTGGCACCTTGGATTACCTGCCC
CCTGAGATGATAGAGGGAAAGAAGCACGACAAGTGGGTCGATGTTTGGAG
TTTGGGCGTTTTGATGTACGAGTTCTTGGTTGGCAATCCCCCCTTTGAAG
CCGAGGGGCATCAGGCGACTTACCGAAGAATTAGTCGGGTCGACCTGAGG
TTCCCTCCCGAGGTCTCGTCCGAGGCCCAGGACTTGATTGCCAAGCTGCT
GGTCAAAGAGCCGTCGTGTCGTTTACCATTGGACAAAATTCCGACCCACC
CTTGGGTGTTGCGAAACGCGCCACGCCATTCGTTGCAGCAATACCTGCCG
GCCGGGACATTTGCGGCGTTATTTTCCTCGCCCCCTGCTGCTACTGCTGC
TGCTCCGGTGGGCGGAAGTGATGGGAGAAATGGAGGAAAGTAGAAAACAT
GCCGGTGAACCCCAACACCACCAGCACCTCAGGCAGCAGCAGCAGTAACA
ATAGCAATAGCAGTCATGACAACCTCAAGAAGGCCCCCTCCTCTTCTTCG
TCGCGCGAGCCCGCCGACCCGGACCGTGTGTGGTCTTTGAACGACTTTGA
TATTGGCCGGAAGCTGGGCCGCGGCAAGTTTGGTGCTGTGTATCTCGCCC
GGGAAAAGTGCACGCAGTTCATCGTTGCCATCAAGGTCCTAGAAAAGCGG
CAGCTCTTTCGTTCGTCGGTCGAGCACCAACTGCGGCGGGAGATGTCCGA
AAGCAATACCCGTCTCTCATCCCCACTACGCAAAATGACGGTCGAAGACA
AAG back to top
|