jgi.p|Nanoce1779_2|597636, mRNA_6659 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|597636
Unique NamemRNA_6659
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length619
Alignment locationscaffold_18:379247..379865 -

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Properties
Property NameValue
TranscriptId597722
TrackFilteredModels2
ProteinId597636
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_18supercontigscaffold_18:379247..379865 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597636gene_6659Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597636mRNA_6659-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6659CDS_6659Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6659 ID=mRNA_6659|Name=jgi.p|Nanoce1779_2|597636|organism=Nannochloropsis oceanica|type=mRNA|length=619bp
AGGTCCCCCCTCTTCATCGTCTGGTCATCACTTTCTCTTCTGGCGCCGCG
CCTGCTTCGATCAACCTCCTCTTTCCATAGCTCTTTGCTGAGCCTTCTGG
CTTCTCGCCTTACACTGGCTTAAAGATGAGACCTGACCTTGAGACGGTGC
TCAACCAACTAGGGACAGCATCCCTGCGCCTCGACACAGGGGCGCTACTA
TCCAAGACTGGCGAAATGGATTCACCCGCGGGGGTGGAAGCTGCCCAGAC
GCTCTACCAAATACTGCTCGACGCCGGCTTGATCCTCCAAGCCCCGCAGC
ACCACGGCGATCCCTTGAGACGCGTTGACGTCCAATTCAAATCATTTCAG
TATGTTATGACTGTGGCTAAGGATGAGGTCTACATTGTCAAGAAGACGCC
GGACGATGCGCGGGGGTAGACAGACAGGCGTAAAGTTGGAGAGCCACAAC
CATGTGTAATCGTTGTACAAAGAAGAAATAAAAATGTATCTCAATCGAAC
AAAATCAAATCGTTCGTAGATTGGCATCAAGTTGGAGAGCCACAACCATG
TGTAATCGTTGTACAAAGAAGAAATAAAAAATGTATCTCAATCGAACAAA
ATCAAATCGTTCGTAGATT
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protein sequence of jgi.p|Nanoce1779_2|597636

>mRNA_6659-protein ID=mRNA_6659-protein|Name=jgi.p|Nanoce1779_2|597636|organism=Nannochloropsis oceanica|type=polypeptide|length=98bp
MRPDLETVLNQLGTASLRLDTGALLSKTGEMDSPAGVEAAQTLYQILLDA
GLILQAPQHHGDPLRRVDVQFKSFQYVMTVAKDEVYIVKKTPDDARG*
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mRNA from alignment at scaffold_18:379247..379865-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6659 ID=mRNA_6659|Name=jgi.p|Nanoce1779_2|597636|organism=Nannochloropsis oceanica|type=mRNA|length=619bp|location=Sequence derived from alignment at scaffold_18:379247..379865- (Nannochloropsis oceanica)
AGGTCCCCCCTCTTCATCGTCTGGTCATCACTTTCTCTTCTGGCGCCGCG
CCTGCTTCGATCAACCTCCTCTTTCCATAGCTCTTTGCTGAGCCTTCTGG
CTTCTCGCCTTACACTGGCTTAAAGATGAGACCTGACCTTGAGACGGTGC
TCAACCAACTAGGGACAGCATCCCTGCGCCTCGACACAGGGGCGCTACTA
TCCAAGACTGGCGAAATGGATTCACCCGCGGGGGTGGAAGCTGCCCAGAC
GCTCTACCAAATACTGCTCGACGCCGGCTTGATCCTCCAAGCCCCGCAGC
ACCACGGCGATCCCTTGAGACGCGTTGACGTCCAATTCAAATCATTTCAG
TATGTTATGACTGTGGCTAAGGATGAGGTCTACATTGTCAAGAAGACGCC
GGACGATGCGCGGGGGTAGACAGACAGGCGTAAAGTTGGAGAGCCACAAC
CATGTGTAATCGTTGTACAAAGAAGAAATAAAAATGTATCTCAATCGAAC
AAAATCAAATCGTTCGTAGATTGGCATCAAGTTGGAGAGCCACAACCATG
TGTAATCGTTGTACAAAGAAGAAATAAAAAATGTATCTCAATCGAACAAA
ATCAAATCGTTCGTAGATT
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Coding sequence (CDS) from alignment at scaffold_18:379247..379865-

>mRNA_6659 ID=mRNA_6659|Name=jgi.p|Nanoce1779_2|597636|organism=Nannochloropsis oceanica|type=CDS|length=294bp|location=Sequence derived from alignment at scaffold_18:379247..379865- (Nannochloropsis oceanica)
ATGAGACCTGACCTTGAGACGGTGCTCAACCAACTAGGGACAGCATCCCT
GCGCCTCGACACAGGGGCGCTACTATCCAAGACTGGCGAAATGGATTCAC
CCGCGGGGGTGGAAGCTGCCCAGACGCTCTACCAAATACTGCTCGACGCC
GGCTTGATCCTCCAAGCCCCGCAGCACCACGGCGATCCCTTGAGACGCGT
TGACGTCCAATTCAAATCATTTCAGTATGTTATGACTGTGGCTAAGGATG
AGGTCTACATTGTCAAGAAGACGCCGGACGATGCGCGGGGGTAG
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Synonyms
Publications